Wall clock time and date at job start Tue Mar 31 2020 00:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30824 * 126.44280 * 2 1 4 4 N 1.28926 * 109.74531 * 180.15687 * 3 2 1 5 5 C 1.29727 * 109.42307 * 0.10289 * 4 3 2 6 6 N 1.34793 * 126.43972 * 180.02562 * 2 1 3 7 7 C 1.46219 * 128.60246 * 359.45354 * 6 2 1 8 8 C 1.53331 * 109.17884 * 161.81056 * 7 6 2 9 9 N 1.47061 * 109.25160 * 45.62163 * 8 7 6 10 10 C 1.34781 * 120.93602 * 116.42587 * 9 8 7 11 11 O 1.21283 * 120.00056 * 180.02562 * 10 9 8 12 12 C 1.50697 * 120.00094 * 0.02562 * 10 9 8 13 13 C 1.53000 * 109.47018 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46942 * 179.97438 * 13 12 10 15 15 H 1.07993 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99953 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47049 * 59.99991 * 18 16 14 20 20 H 1.48508 * 109.46940 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46952 * 300.00250 * 18 16 14 22 22 C 1.47523 * 118.11412 * 296.44581 * 9 8 7 23 23 H 1.08999 * 109.95887 * 162.49539 * 22 9 8 24 24 C 1.52996 * 109.95886 * 283.77512 * 22 9 8 25 25 H 1.08997 * 109.46978 * 269.98160 * 1 2 3 26 26 H 1.09003 * 109.46610 * 29.97650 * 1 2 3 27 27 H 1.08997 * 109.46788 * 149.97891 * 1 2 3 28 28 H 1.09004 * 109.51865 * 281.71618 * 7 6 2 29 29 H 1.08996 * 109.52356 * 41.83988 * 7 6 2 30 30 H 1.08993 * 109.51135 * 165.56361 * 8 7 6 31 31 H 1.08997 * 109.50927 * 285.70858 * 8 7 6 32 32 H 1.09004 * 109.47145 * 299.99820 * 12 10 9 33 33 H 1.09000 * 109.47274 * 59.99669 * 12 10 9 34 34 H 1.08998 * 109.46919 * 299.99322 * 13 12 10 35 35 H 1.09000 * 109.47647 * 59.99557 * 13 12 10 36 36 H 0.97000 * 119.99711 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.47320 * 177.50496 * 24 22 9 38 38 H 1.08994 * 109.47770 * 297.51149 * 24 22 9 39 39 H 1.09009 * 109.46824 * 57.50982 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5190 0.6820 -0.0033 5 6 3.5807 -0.6138 -0.0078 6 7 2.3077 -1.0844 -0.0005 7 6 1.9303 -2.4970 0.0098 8 6 3.1260 -3.3411 -0.4471 9 7 4.3393 -2.8758 0.2414 10 6 5.0085 -3.6834 1.0880 11 8 6.0071 -3.2820 1.6471 12 6 4.5159 -5.0852 1.3398 13 6 5.4481 -5.7827 2.3325 14 6 4.9551 -7.1843 2.5848 15 1 4.0657 -7.5416 2.0872 16 6 5.6395 -8.0104 3.4509 17 7 6.7230 -7.5753 4.0565 18 14 5.0281 -9.7474 3.7641 19 1 5.0097 -10.5037 2.4862 20 1 5.9337 -10.4249 4.7267 21 1 3.6554 -9.6948 4.3280 22 6 4.8029 -1.5000 -0.0205 23 1 5.4976 -1.1868 0.7588 24 6 5.4846 -1.4302 -1.3884 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6425 -2.7898 1.0196 29 1 1.0916 -2.6549 -0.6682 30 1 2.9473 -4.3881 -0.2022 31 1 3.2559 -3.2355 -1.5241 32 1 3.5081 -5.0474 1.7533 33 1 4.5031 -5.6398 0.4015 34 1 6.4560 -5.8205 1.9194 35 1 5.4605 -5.2279 3.2707 36 1 7.2047 -8.1566 4.6655 37 1 5.7843 -0.4023 -1.5930 38 1 6.3652 -2.0724 -1.3889 39 1 4.7896 -1.7660 -2.1582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135351663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:30 Heat of formation + Delta-G solvation = 15.759787 kcal Electronic energy + Delta-G solvation = -21841.080755 eV Core-core repulsion = 18591.012649 eV Total energy + Delta-G solvation = -3250.068106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.42839 -41.13452 -38.17798 -35.98074 -35.55516 -33.93661 -32.87257 -32.30401 -30.04957 -28.47324 -27.80916 -25.51333 -25.12643 -23.56671 -22.22884 -21.39372 -19.59122 -18.92903 -18.18867 -17.99938 -17.52362 -16.96998 -16.58389 -16.41905 -15.72179 -15.34085 -15.06626 -14.83845 -14.22850 -14.18844 -14.13873 -13.74323 -13.56595 -13.41690 -13.22960 -13.19903 -12.98258 -12.76551 -12.63742 -12.50134 -12.38193 -11.92045 -11.60285 -11.49761 -11.31578 -11.14790 -10.81049 -10.54478 -10.23818 -9.99573 -8.16195 -6.30377 0.70382 1.28276 1.44729 1.48547 1.52628 1.56244 1.69503 1.75071 2.44500 2.95522 3.17673 3.31175 3.44449 3.62381 3.86292 3.95202 4.00545 4.07372 4.14941 4.36295 4.45371 4.52640 4.52858 4.58368 4.64713 4.69602 4.79295 4.89642 4.95842 5.02964 5.05611 5.14109 5.29770 5.51975 5.62637 5.82325 5.86286 6.16502 6.19096 6.88240 7.09273 7.40554 7.59612 8.96290 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.003885 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.755114 B = 7205.092881 C = 7746.782034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.189 3.811 3 N -0.348 5.348 4 N -0.322 5.322 5 C 0.164 3.836 6 N -0.464 5.464 7 C 0.080 3.920 8 C 0.084 3.916 9 N -0.619 5.619 10 C 0.519 3.481 11 O -0.580 6.580 12 C -0.112 4.112 13 C 0.040 3.960 14 C -0.540 4.540 15 H 0.083 0.917 16 C -0.008 4.008 17 N -0.940 5.940 18 Si 0.972 3.028 19 H -0.260 1.260 20 H -0.293 1.293 21 H -0.261 1.261 22 C 0.228 3.772 23 H 0.093 0.907 24 C -0.139 4.139 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.157 0.843 30 H 0.143 0.857 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.117 0.883 34 H -0.018 1.018 35 H -0.022 1.022 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.384 7.995 -14.531 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 N -0.189 5.189 4 N -0.161 5.161 5 C -0.106 4.106 6 N -0.156 5.156 7 C -0.042 4.042 8 C -0.037 4.037 9 N -0.354 5.354 10 C 0.311 3.689 11 O -0.458 6.458 12 C -0.151 4.151 13 C 0.002 3.998 14 C -0.577 4.577 15 H 0.101 0.899 16 C -0.205 4.205 17 N -0.580 5.580 18 Si 0.796 3.204 19 H -0.185 1.185 20 H -0.219 1.219 21 H -0.186 1.186 22 C 0.122 3.878 23 H 0.111 0.889 24 C -0.198 4.198 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.175 0.825 30 H 0.161 0.839 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.000 1.000 35 H -0.003 1.003 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.322 9.574 -14.104 23.601 hybrid contribution 0.313 -1.641 0.843 1.872 sum -16.009 7.933 -13.261 22.250 Atomic orbital electron populations 1.20493 0.79783 1.06494 1.05442 1.25647 0.98857 0.82001 1.01414 1.74393 0.96202 1.25821 1.22449 1.73917 1.13391 1.09079 1.19688 1.24784 0.88090 0.92318 1.05412 1.46145 1.05623 1.09999 1.53787 1.22901 1.00466 0.74234 1.06600 1.22486 0.81083 1.01270 0.98894 1.48512 1.28929 1.12372 1.45615 1.21625 0.82474 0.88503 0.76344 1.90691 1.27880 1.76724 1.50483 1.21691 1.01707 0.89156 1.02585 1.18716 0.93767 0.94384 0.92901 1.21684 1.11766 0.98221 1.26071 0.89931 1.26138 0.94966 1.03729 0.95660 1.70184 1.19278 1.38459 1.30072 0.85395 0.78296 0.78341 0.78342 1.18480 1.21915 1.18570 1.19477 0.88829 0.78637 1.00876 0.88918 1.21959 1.00871 1.03698 0.93290 0.88380 0.88076 0.86899 0.87901 0.82543 0.83942 0.87389 0.87001 0.86550 0.99957 1.00349 0.92993 0.90326 0.91072 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.28 71.24 0.73 0.17 16 2 C 0.19 3.94 8.06 138.11 1.11 5.06 16 3 N -0.35 -10.59 12.23 -50.42 -0.62 -11.20 16 4 N -0.32 -10.70 12.21 -50.18 -0.61 -11.32 16 5 C 0.16 4.56 7.16 138.22 0.99 5.55 16 6 N -0.46 -9.37 3.11 -504.51 -1.57 -10.94 16 7 C 0.08 0.83 6.92 86.54 0.60 1.43 16 8 C 0.08 1.11 6.22 86.38 0.54 1.64 16 9 N -0.62 -15.73 2.63 -797.02 -2.10 -17.83 16 10 C 0.52 18.61 7.71 87.66 0.68 19.29 16 11 O -0.58 -27.64 15.52 -3.04 -0.05 -27.69 16 12 C -0.11 -3.91 3.99 29.85 0.12 -3.79 16 13 C 0.04 2.10 4.26 29.85 0.13 2.22 16 14 C -0.54 -28.77 9.11 25.60 0.23 -28.54 16 15 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 16 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 17 N -0.94 -58.38 13.29 21.45 0.28 -58.09 16 18 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 C 0.23 6.29 3.25 44.14 0.14 6.44 16 23 H 0.09 3.20 7.23 -2.39 -0.02 3.18 16 24 C -0.14 -3.06 9.45 71.98 0.68 -2.38 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.11 0.22 7.68 -2.39 -0.02 0.20 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.16 0.16 7.76 -2.39 -0.02 0.14 16 30 H 0.14 1.33 5.95 -2.39 -0.01 1.31 16 31 H 0.11 0.98 7.47 -2.39 -0.02 0.96 16 32 H 0.11 3.21 7.90 -2.38 -0.02 3.19 16 33 H 0.12 3.31 7.76 -2.39 -0.02 3.29 16 34 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 35 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.37 7.46 -2.38 -0.02 1.36 16 Total: -1.00 -87.03 323.90 4.83 -82.20 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.05 Total: 3.41 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.41 Total: 7.13 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -4.61 Total: -109.38 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.05 Total: -27.69 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -87.03 4.83 -82.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135351663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.955 kcal (2) G-P(sol) polarization free energy of solvation -87.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds