Wall clock time and date at job start Tue Mar 31 2020 00:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47743 * 2 1 4 4 C 1.50702 * 109.47016 * 120.00455 * 2 1 3 5 5 N 1.32159 * 120.53924 * 290.33864 * 4 2 1 6 6 C 1.31852 * 120.97033 * 180.02562 * 5 4 2 7 7 N 1.31886 * 122.09463 * 359.97438 * 6 5 4 8 8 C 1.32127 * 120.96582 * 0.02562 * 7 6 5 9 9 C 1.39930 * 120.53589 * 110.35657 * 4 2 1 10 10 C 1.47834 * 120.94218 * 359.96038 * 9 4 2 11 11 O 1.21551 * 120.00100 * 323.56665 * 10 9 4 12 12 N 1.34773 * 119.99715 * 143.56668 * 10 9 4 13 13 C 1.46505 * 119.99699 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47083 * 180.02562 * 13 12 10 15 15 N 1.46505 * 109.47083 * 180.02562 * 14 13 12 16 16 C 1.36930 * 120.00063 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99765 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00192 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00025 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99861 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46805 * 89.99591 * 20 18 16 22 22 H 1.48495 * 109.47024 * 209.99772 * 20 18 16 23 23 H 1.48494 * 109.47130 * 329.99954 * 20 18 16 24 24 H 1.08999 * 109.47013 * 299.99874 * 1 2 3 25 25 H 1.09004 * 109.46883 * 59.99872 * 1 2 3 26 26 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46794 * 240.00300 * 2 1 3 28 28 H 1.08996 * 109.47714 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47299 * 300.00290 * 3 2 1 30 30 H 1.09007 * 109.46731 * 60.00262 * 3 2 1 31 31 H 1.08002 * 118.94986 * 180.28077 * 6 5 4 32 32 H 1.08000 * 120.53861 * 180.02562 * 8 7 6 33 33 H 0.97001 * 120.00595 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.46878 * 299.99432 * 13 12 10 35 35 H 1.08997 * 109.47072 * 60.00137 * 13 12 10 36 36 H 1.09000 * 109.46755 * 299.99452 * 14 13 12 37 37 H 1.08997 * 109.47099 * 60.00099 * 14 13 12 38 38 H 0.97001 * 119.99706 * 359.97438 * 15 14 13 39 39 H 0.96998 * 119.99507 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8831 -0.1688 2.4266 6 6 2.3198 -0.7827 3.5087 7 7 2.9205 -1.9556 3.4547 8 6 3.1114 -2.5691 2.3002 9 6 2.6645 -1.9544 1.1248 10 6 2.8544 -2.6012 -0.1908 11 8 1.9991 -2.4976 -1.0482 12 7 3.9761 -3.3058 -0.4396 13 6 4.1646 -3.9464 -1.7436 14 6 5.5090 -4.6766 -1.7636 15 7 5.6977 -5.3167 -3.0678 16 6 6.8373 -6.0325 -3.3207 17 1 7.5968 -6.1256 -2.5585 18 6 7.0159 -6.6394 -4.5562 19 7 8.1112 -7.3279 -4.7991 20 14 5.7019 -6.4790 -5.8743 21 1 5.9760 -5.2775 -6.7028 22 1 5.7152 -7.6882 -6.7362 23 1 4.3701 -6.3438 -5.2316 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 2.1766 -0.3124 4.4703 32 1 3.6039 -3.5296 2.2640 33 1 4.6589 -3.3882 0.2444 34 1 3.3605 -4.6617 -1.9166 35 1 4.1510 -3.1880 -2.5263 36 1 6.3133 -3.9617 -1.5904 37 1 5.5221 -5.4351 -0.9809 38 1 5.0154 -5.2334 -3.7522 39 1 8.2361 -7.7517 -5.6626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151266046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:32 Heat of formation + Delta-G solvation = 18.260398 kcal Electronic energy + Delta-G solvation = -20981.987711 eV Core-core repulsion = 17732.028039 eV Total energy + Delta-G solvation = -3249.959671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70424 -39.50486 -36.56926 -35.82217 -34.13224 -33.39208 -32.14650 -31.33086 -28.35520 -27.36129 -25.56059 -25.16856 -23.35611 -21.61941 -21.13802 -20.96400 -18.24651 -18.19298 -17.47971 -16.98122 -16.08375 -15.56280 -15.09517 -14.92447 -14.62312 -14.34180 -14.13371 -13.86604 -13.79699 -13.74599 -13.34821 -12.69792 -12.39369 -11.99768 -11.81620 -11.76167 -11.58816 -11.56168 -11.21698 -10.99245 -10.90632 -10.87043 -10.21565 -10.03615 -9.91854 -9.67299 -9.62356 -9.18519 -8.97458 -7.36600 -5.84827 -3.22945 0.15825 0.63855 2.48006 2.89394 3.34326 3.36921 3.37550 3.42451 3.60497 3.71208 3.92836 4.36933 4.50234 4.52938 4.82143 4.84848 4.90768 5.06935 5.21473 5.36899 5.39449 5.45500 5.51222 5.56256 5.61100 5.66563 5.76953 5.84354 5.90048 6.02216 6.10034 6.21037 6.48099 6.48759 6.52529 7.26893 7.63070 7.87500 7.94779 8.32952 9.10231 9.82403 10.00102 11.32916 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.003382 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.311228 B = 8277.348045 C = 8961.917979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.140 4.140 4 C 0.239 3.761 5 N -0.516 5.516 6 C 0.312 3.688 7 N -0.525 5.525 8 C 0.183 3.817 9 C -0.237 4.237 10 C 0.566 3.434 11 O -0.522 6.522 12 N -0.712 5.712 13 C 0.107 3.893 14 C 0.148 3.852 15 N -0.752 5.752 16 C -0.251 4.251 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.885 3.115 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.276 1.276 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.175 0.825 33 H 0.402 0.598 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.364 0.636 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 15.769 15.397 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 C -0.198 4.198 4 C 0.092 3.908 5 N -0.230 5.230 6 C 0.025 3.975 7 N -0.238 5.238 8 C 0.016 3.984 9 C -0.245 4.245 10 C 0.350 3.650 11 O -0.400 6.400 12 N -0.363 5.363 13 C -0.017 4.017 14 C 0.020 3.980 15 N -0.398 5.398 16 C -0.381 4.381 17 H 0.109 0.891 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.202 1.202 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.130 0.870 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.217 0.783 32 H 0.192 0.808 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.196 0.804 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.093 16.149 15.687 26.561 hybrid contribution -0.273 -0.563 -1.307 1.449 sum -14.366 15.587 14.380 25.615 Atomic orbital electron populations 1.21671 0.92621 1.02392 1.02279 1.20538 0.97557 0.96457 0.93677 1.21791 1.00791 0.94478 1.02752 1.21888 0.86219 0.88790 0.93951 1.68308 1.20102 1.35946 0.98633 1.25224 0.87385 0.87342 0.97552 1.68459 1.16011 1.10797 1.28558 1.23536 0.89994 0.98361 0.86468 1.21678 1.06841 0.99482 0.96471 1.17742 0.82334 0.78736 0.86172 1.90782 1.42437 1.60142 1.46594 1.45837 1.20368 1.52539 1.17571 1.21694 0.99482 0.97047 0.83446 1.20737 0.92471 0.94883 0.89915 1.42515 1.22427 1.63376 1.11526 1.18997 0.95301 1.24276 0.99482 0.89069 1.24678 0.97175 0.99467 0.97507 1.69700 1.26370 1.38153 1.23575 0.86545 0.81951 0.77511 0.82526 1.20878 1.21546 1.20169 0.92217 0.91587 0.92341 0.86985 0.92981 0.91727 0.91456 0.78268 0.80770 0.76343 0.90887 0.90922 0.94816 0.94824 0.80350 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.18 37.15 0.34 -0.93 16 2 C -0.06 -0.67 2.72 -91.78 -0.25 -0.92 16 3 C -0.14 -1.25 9.02 37.15 0.34 -0.92 16 4 C 0.24 2.63 5.55 -81.82 -0.45 2.18 16 5 N -0.52 -5.27 9.89 -10.48 -0.10 -5.37 16 6 C 0.31 2.73 12.27 -92.03 -1.13 1.61 16 7 N -0.52 -5.08 10.42 -14.24 -0.15 -5.23 16 8 C 0.18 1.70 10.64 -16.78 -0.18 1.52 16 9 C -0.24 -2.58 5.81 -104.69 -0.61 -3.19 16 10 C 0.57 7.15 7.04 -12.34 -0.09 7.06 16 11 O -0.52 -8.14 14.49 5.32 0.08 -8.06 16 12 N -0.71 -8.29 5.49 -61.25 -0.34 -8.63 16 13 C 0.11 1.56 5.79 -4.04 -0.02 1.54 16 14 C 0.15 2.58 6.37 -4.04 -0.03 2.56 16 15 N -0.75 -17.23 5.41 -59.90 -0.32 -17.55 16 16 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 17 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 18 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 19 N -0.93 -28.79 13.97 55.49 0.78 -28.01 16 20 Si 0.88 21.74 27.74 -169.99 -4.71 17.02 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.11 1.38 5.30 -51.92 -0.28 1.11 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.59 7.92 -51.92 -0.41 0.18 16 31 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.18 1.16 7.77 -52.49 -0.41 0.75 16 33 H 0.40 3.62 7.80 -40.82 -0.32 3.30 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.36 8.18 5.53 -40.82 -0.23 7.95 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -33.21 330.51 -7.58 -40.79 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.46 Total: 6.52 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.33 Total: 3.54 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.14 Total: -64.79 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.21 -7.58 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151266046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.054 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds