Wall clock time and date at job start Tue Mar 31 2020 00:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47743 * 2 1 4 4 C 1.50702 * 109.47016 * 120.00455 * 2 1 3 5 5 N 1.32159 * 120.53924 * 290.33864 * 4 2 1 6 6 C 1.31852 * 120.97033 * 180.02562 * 5 4 2 7 7 N 1.31886 * 122.09463 * 359.97438 * 6 5 4 8 8 C 1.32127 * 120.96582 * 0.02562 * 7 6 5 9 9 C 1.39930 * 120.53589 * 110.35657 * 4 2 1 10 10 C 1.47834 * 120.94218 * 359.96038 * 9 4 2 11 11 O 1.21551 * 120.00100 * 323.56665 * 10 9 4 12 12 N 1.34773 * 119.99715 * 143.56668 * 10 9 4 13 13 C 1.46505 * 119.99699 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47083 * 180.02562 * 13 12 10 15 15 N 1.46505 * 109.47083 * 180.02562 * 14 13 12 16 16 C 1.36930 * 120.00063 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99765 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00192 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00025 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99861 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46805 * 89.99591 * 20 18 16 22 22 H 1.48495 * 109.47024 * 209.99772 * 20 18 16 23 23 H 1.48494 * 109.47130 * 329.99954 * 20 18 16 24 24 H 1.08999 * 109.47013 * 299.99874 * 1 2 3 25 25 H 1.09004 * 109.46883 * 59.99872 * 1 2 3 26 26 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46794 * 240.00300 * 2 1 3 28 28 H 1.08996 * 109.47714 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47299 * 300.00290 * 3 2 1 30 30 H 1.09007 * 109.46731 * 60.00262 * 3 2 1 31 31 H 1.08002 * 118.94986 * 180.28077 * 6 5 4 32 32 H 1.08000 * 120.53861 * 180.02562 * 8 7 6 33 33 H 0.97001 * 120.00595 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.46878 * 299.99432 * 13 12 10 35 35 H 1.08997 * 109.47072 * 60.00137 * 13 12 10 36 36 H 1.09000 * 109.46755 * 299.99452 * 14 13 12 37 37 H 1.08997 * 109.47099 * 60.00099 * 14 13 12 38 38 H 0.97001 * 119.99706 * 359.97438 * 15 14 13 39 39 H 0.96998 * 119.99507 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8831 -0.1688 2.4266 6 6 2.3198 -0.7827 3.5087 7 7 2.9205 -1.9556 3.4547 8 6 3.1114 -2.5691 2.3002 9 6 2.6645 -1.9544 1.1248 10 6 2.8544 -2.6012 -0.1908 11 8 1.9991 -2.4976 -1.0482 12 7 3.9761 -3.3058 -0.4396 13 6 4.1646 -3.9464 -1.7436 14 6 5.5090 -4.6766 -1.7636 15 7 5.6977 -5.3167 -3.0678 16 6 6.8373 -6.0325 -3.3207 17 1 7.5968 -6.1256 -2.5585 18 6 7.0159 -6.6394 -4.5562 19 7 8.1112 -7.3279 -4.7991 20 14 5.7019 -6.4790 -5.8743 21 1 5.9760 -5.2775 -6.7028 22 1 5.7152 -7.6882 -6.7362 23 1 4.3701 -6.3438 -5.2316 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 2.1766 -0.3124 4.4703 32 1 3.6039 -3.5296 2.2640 33 1 4.6589 -3.3882 0.2444 34 1 3.3605 -4.6617 -1.9166 35 1 4.1510 -3.1880 -2.5263 36 1 6.3133 -3.9617 -1.5904 37 1 5.5221 -5.4351 -0.9809 38 1 5.0154 -5.2334 -3.7522 39 1 8.2361 -7.7517 -5.6626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151266046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:31 Heat of formation + Delta-G solvation = -5.252627 kcal Electronic energy + Delta-G solvation = -20983.007312 eV Core-core repulsion = 17732.028039 eV Total energy + Delta-G solvation = -3250.979272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.48608 -40.49847 -37.63871 -37.02253 -35.57191 -34.23158 -33.51532 -32.72494 -29.83640 -28.09426 -26.51550 -25.99558 -24.94868 -23.15643 -22.04940 -21.86290 -19.91766 -19.00241 -18.74004 -17.75627 -17.19780 -16.70815 -16.37285 -15.99169 -15.75566 -15.59694 -15.32808 -15.06488 -14.96449 -14.68308 -14.49349 -14.08390 -13.45832 -13.22857 -13.09485 -12.82070 -12.73030 -12.62295 -12.53556 -12.32430 -12.07902 -11.98242 -11.82196 -11.63240 -11.03898 -10.97929 -10.76167 -10.37154 -10.19889 -9.35975 -8.04772 -5.40277 -0.60518 -0.11299 1.40102 1.42117 1.49229 1.53040 1.88552 2.47543 2.61761 2.87471 3.06936 3.20316 3.27333 3.46395 3.71475 3.79328 3.96174 4.06284 4.14607 4.16826 4.20653 4.40075 4.55150 4.63011 4.76048 4.88109 4.90983 4.97235 5.06117 5.09564 5.16405 5.25071 5.28142 5.37959 5.73105 5.77519 6.18047 6.33146 6.90675 6.98427 7.04601 7.78394 7.95710 9.16073 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.003382 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.311228 B = 8277.348045 C = 8961.917979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.134 4.134 4 C 0.230 3.770 5 N -0.525 5.525 6 C 0.314 3.686 7 N -0.535 5.535 8 C 0.191 3.809 9 C -0.251 4.251 10 C 0.571 3.429 11 O -0.554 6.554 12 N -0.701 5.701 13 C 0.123 3.877 14 C 0.148 3.852 15 N -0.758 5.758 16 C -0.238 4.238 17 H 0.063 0.937 18 C -0.060 4.060 19 N -0.981 5.981 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.251 1.251 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.234 0.766 32 H 0.200 0.800 33 H 0.416 0.584 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.367 0.633 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 16.988 16.562 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 C -0.192 4.192 4 C 0.083 3.917 5 N -0.239 5.239 6 C 0.029 3.971 7 N -0.249 5.249 8 C 0.024 3.976 9 C -0.259 4.259 10 C 0.356 3.644 11 O -0.434 6.434 12 N -0.353 5.353 13 C -0.001 4.001 14 C 0.022 3.978 15 N -0.405 5.405 16 C -0.369 4.369 17 H 0.081 0.919 18 C -0.252 4.252 19 N -0.631 5.631 20 Si 0.779 3.221 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.176 1.176 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.250 0.750 32 H 0.216 0.784 33 H 0.254 0.746 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.201 0.799 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.560 17.406 16.918 28.832 hybrid contribution 0.216 -0.897 -1.506 1.766 sum -15.344 16.509 15.412 27.304 Atomic orbital electron populations 1.21625 0.92133 1.01558 1.03090 1.20518 0.97969 0.97110 0.92909 1.21743 1.00444 0.93549 1.03422 1.22018 0.86171 0.89012 0.94487 1.68375 1.20701 1.36195 0.98612 1.25952 0.85846 0.86959 0.98391 1.68572 1.16551 1.11273 1.28456 1.23922 0.88971 0.98896 0.85765 1.21522 1.08515 0.99879 0.95971 1.17935 0.81780 0.78187 0.86472 1.90770 1.43552 1.61249 1.47804 1.45619 1.20716 1.52063 1.16894 1.21316 0.97454 0.96599 0.84758 1.20851 0.94265 0.95112 0.87613 1.42527 1.21052 1.63197 1.13704 1.19003 0.95873 1.23437 0.98544 0.91890 1.25497 0.99608 0.99916 1.00196 1.69873 1.28901 1.40131 1.24214 0.85449 0.80137 0.77116 0.79354 1.20360 1.22198 1.17573 0.91629 0.90518 0.93927 0.88932 0.93413 0.90660 0.91143 0.74975 0.78378 0.74636 0.91379 0.91442 0.94119 0.93853 0.79948 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.18 71.98 0.66 -1.69 16 2 C -0.07 -1.34 2.72 -11.54 -0.03 -1.37 16 3 C -0.13 -2.23 9.02 71.98 0.65 -1.58 16 4 C 0.23 4.79 5.55 42.92 0.24 5.03 16 5 N -0.53 -9.74 9.89 -187.06 -1.85 -11.59 16 6 C 0.31 4.73 12.27 180.84 2.22 6.95 16 7 N -0.54 -9.03 10.42 -198.97 -2.07 -11.10 16 8 C 0.19 3.12 10.64 85.07 0.90 4.03 16 9 C -0.25 -5.11 5.81 -19.91 -0.12 -5.23 16 10 C 0.57 13.74 7.04 86.78 0.61 14.35 16 11 O -0.55 -17.00 14.49 -3.88 -0.06 -17.06 16 12 N -0.70 -15.05 5.49 -465.98 -2.56 -17.61 16 13 C 0.12 3.39 5.79 86.38 0.50 3.89 16 14 C 0.15 4.92 6.37 86.38 0.55 5.47 16 15 N -0.76 -33.72 5.41 -343.44 -1.86 -35.58 16 16 C -0.24 -13.15 10.47 84.03 0.88 -12.27 16 17 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 18 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 19 N -0.98 -61.89 13.97 21.65 0.30 -61.59 16 20 Si 0.95 44.63 27.74 68.60 1.90 46.53 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 2.27 5.30 -2.38 -0.01 2.26 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.12 7.92 -2.38 -0.02 1.10 16 31 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.20 2.07 7.77 -2.91 -0.02 2.05 16 33 H 0.42 6.52 7.80 -92.71 -0.72 5.80 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.37 15.75 5.53 -92.71 -0.51 15.24 16 39 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -71.62 330.51 1.12 -70.50 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.22 Total: 22.93 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 7.53 Total: 14.56 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -8.04 Total: -137.46 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.06 Total: -17.06 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Total: -71.62 1.12 -70.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151266046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.244 kcal (2) G-P(sol) polarization free energy of solvation -71.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds