Wall clock time and date at job start Tue Mar 31 2020 00:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47112 * 2 1 4 4 C 1.53002 * 109.47244 * 240.00202 * 2 1 3 5 5 C 1.53005 * 109.47120 * 64.99558 * 4 2 1 6 6 N 1.46501 * 109.47529 * 184.99957 * 4 2 1 7 7 C 1.38820 * 119.99891 * 178.35714 * 6 4 2 8 8 C 1.39960 * 119.97544 * 353.66484 * 7 6 4 9 9 N 1.32125 * 120.32214 * 179.75276 * 8 7 6 10 10 C 1.31929 * 120.27132 * 0.52791 * 9 8 7 11 11 C 1.40683 * 119.93104 * 359.73180 * 10 9 8 12 12 C 1.41270 * 120.15431 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00179 * 353.84518 * 12 11 10 14 14 C 1.40052 * 120.00005 * 173.84639 * 12 11 10 15 15 N 1.30733 * 120.00187 * 6.17894 * 14 12 11 16 16 Si 1.86801 * 120.00240 * 186.18413 * 14 12 11 17 17 H 1.48505 * 109.47013 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47626 * 119.99995 * 16 14 12 19 19 H 1.48505 * 109.47187 * 239.99925 * 16 14 12 20 20 N 1.32243 * 119.96651 * 173.94883 * 7 6 4 21 21 C 1.50703 * 109.47089 * 305.00126 * 4 2 1 22 22 N 1.34773 * 119.99775 * 274.99858 * 21 4 2 23 23 O 1.21280 * 120.00593 * 94.99283 * 21 4 2 24 24 H 1.08990 * 109.47448 * 60.00066 * 1 2 3 25 25 H 1.09005 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47264 * 299.99600 * 1 2 3 27 27 H 1.09002 * 109.47502 * 120.00358 * 2 1 3 28 28 H 1.09002 * 109.46729 * 60.00072 * 3 2 1 29 29 H 1.09001 * 109.46864 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46758 * 300.00316 * 3 2 1 31 31 H 1.09001 * 109.46611 * 64.47614 * 5 4 2 32 32 H 1.08998 * 109.47141 * 184.48012 * 5 4 2 33 33 H 1.09002 * 109.47288 * 304.48519 * 5 4 2 34 34 H 0.97001 * 119.99555 * 358.34904 * 6 4 2 35 35 H 1.08005 * 119.83589 * 0.02860 * 8 7 6 36 36 H 1.07997 * 120.03738 * 179.74806 * 10 9 8 37 37 H 0.97000 * 119.99936 * 179.97438 * 15 14 12 38 38 H 0.97005 * 120.00218 * 0.02562 * 22 21 4 39 39 H 0.97000 * 120.00433 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6351 0.0690 -2.4954 6 7 3.5001 -0.8264 -1.1907 7 6 4.1903 -1.4768 -2.2044 8 6 3.4863 -2.1459 -3.2121 9 7 4.1362 -2.7631 -4.1828 10 6 5.4554 -2.7627 -4.2050 11 6 6.1742 -2.0981 -3.1947 12 6 7.5868 -2.0952 -3.2136 13 1 8.1183 -2.6850 -3.9457 14 6 8.2979 -1.3274 -2.2829 15 7 7.6615 -0.7099 -1.3223 16 14 10.1559 -1.1854 -2.4142 17 1 10.6315 -1.9732 -3.5798 18 1 10.5322 0.2400 -2.5928 19 1 10.7814 -1.7107 -1.1739 20 7 5.5127 -1.4682 -2.2140 21 6 1.4391 -2.1018 -1.3128 22 7 2.0181 -3.1200 -0.6462 23 8 0.4344 -2.2966 -1.9637 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 2.1334 1.0384 -2.4885 32 1 1.9285 -0.4842 -3.3876 33 1 0.5551 0.2157 -2.4975 34 1 3.9844 -0.4414 -0.4436 35 1 2.4064 -2.1541 -3.1985 36 1 5.9828 -3.2718 -4.9981 37 1 8.1541 -0.1784 -0.6775 38 1 2.8214 -2.9642 -0.1253 39 1 1.6312 -4.0086 -0.6868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156651222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:25 Heat of formation + Delta-G solvation = 4.884731 kcal Electronic energy + Delta-G solvation = -22696.851457 eV Core-core repulsion = 19446.311774 eV Total energy + Delta-G solvation = -3250.539684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.52353 -38.60024 -36.77059 -34.22913 -33.77388 -33.00906 -31.58616 -29.57516 -28.41784 -27.19195 -25.93750 -24.65785 -22.52617 -21.50047 -20.95635 -18.89880 -17.72886 -17.05488 -16.73332 -16.47547 -15.79038 -15.13324 -14.96723 -14.54296 -14.34661 -13.88774 -13.34782 -13.24409 -13.02243 -12.82762 -12.60962 -12.29019 -11.95000 -11.53441 -11.40640 -11.35304 -11.28892 -11.13234 -10.93455 -10.69334 -10.60074 -10.34384 -10.16041 -9.79413 -9.42080 -9.40210 -9.30581 -8.41420 -7.43643 -6.84370 -6.50341 -4.69368 2.63217 2.89120 3.01484 3.04169 3.06315 3.23788 3.75578 3.83674 3.89929 4.65860 4.70382 4.84849 5.00931 5.31425 5.41550 5.52215 5.63732 5.79848 5.84547 5.86569 5.98779 6.01313 6.08753 6.11962 6.22521 6.27746 6.31678 6.47491 6.61866 6.77590 6.98478 7.04583 7.10377 7.51417 7.65264 7.85655 7.98475 8.33023 8.49843 8.58353 8.78664 9.38820 9.93348 10.13041 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.005584 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.504000 B = 5012.708249 C = 5694.905071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.181 3.819 5 C -0.158 4.158 6 N -0.724 5.724 7 C 0.369 3.631 8 C -0.168 4.168 9 N -0.406 5.406 10 C -0.105 4.105 11 C 0.244 3.756 12 C -0.415 4.415 13 H 0.090 0.910 14 C 0.069 3.931 15 N -0.710 5.710 16 Si 0.910 3.090 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.273 1.273 20 N -0.502 5.502 21 C 0.527 3.473 22 N -0.844 5.844 23 O -0.551 6.551 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.399 0.601 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.273 0.727 38 H 0.403 0.597 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 3.228 6.965 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.205 4.205 4 C 0.089 3.911 5 C -0.216 4.216 6 N -0.364 5.364 7 C 0.126 3.874 8 C -0.329 4.329 9 N -0.117 5.117 10 C -0.275 4.275 11 C 0.116 3.884 12 C -0.448 4.448 13 H 0.108 0.892 14 C -0.158 4.158 15 N -0.331 5.331 16 Si 0.734 3.266 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.198 1.198 20 N -0.228 5.228 21 C 0.311 3.689 22 N -0.405 5.405 23 O -0.428 6.428 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.305 3.399 6.615 10.424 hybrid contribution 1.400 -0.086 0.519 1.495 sum -5.905 3.313 7.134 9.835 Atomic orbital electron populations 1.21912 0.93792 1.02644 1.02276 1.21225 0.96786 0.97053 0.95750 1.21900 1.01826 0.94693 1.02102 1.20270 0.81462 0.91708 0.97636 1.22308 1.01713 1.00251 0.97371 1.44242 1.02774 1.63918 1.25441 1.19449 0.91260 0.89248 0.87455 1.22292 0.98625 1.13041 0.98981 1.67558 1.09974 1.12584 1.21613 1.22948 0.89931 1.11274 1.03387 1.19089 0.94239 0.87841 0.87253 1.19654 0.89771 1.22616 1.12770 0.89159 1.26114 1.00951 0.94446 0.94256 1.70104 1.36986 1.17909 1.08079 0.86226 0.81878 0.79049 0.79473 1.18181 1.19759 1.19809 1.69031 1.02591 1.24849 1.26362 1.20832 0.83302 0.87483 0.77327 1.43769 1.31918 1.11680 1.53182 1.90711 1.25892 1.84650 1.41549 0.91602 0.92218 0.92279 0.90440 0.92433 0.91820 0.91808 0.91423 0.90584 0.91113 0.76388 0.85415 0.85299 0.91569 0.76788 0.77406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.53 37.16 0.32 -1.36 16 2 C -0.09 -1.07 2.32 -90.62 -0.21 -1.28 16 3 C -0.15 -1.62 8.58 37.16 0.32 -1.30 16 4 C 0.18 2.80 0.47 -132.97 -0.06 2.74 16 5 C -0.16 -2.57 7.00 37.16 0.26 -2.31 16 6 N -0.72 -12.91 4.26 -48.66 -0.21 -13.11 16 7 C 0.37 8.42 7.08 -155.02 -1.10 7.33 16 8 C -0.17 -4.02 8.48 -16.78 -0.14 -4.16 16 9 N -0.41 -10.43 10.47 -12.11 -0.13 -10.56 16 10 C -0.11 -2.71 10.97 -16.59 -0.18 -2.89 16 11 C 0.24 6.49 6.54 -84.83 -0.55 5.93 16 12 C -0.42 -10.56 9.15 -37.75 -0.35 -10.91 16 13 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 14 C 0.07 1.64 5.49 -17.34 -0.10 1.54 16 15 N -0.71 -17.48 11.51 55.55 0.64 -16.84 16 16 Si 0.91 17.55 29.56 -169.99 -5.03 12.52 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 N -0.50 -12.97 8.10 -10.14 -0.08 -13.06 16 21 C 0.53 8.88 2.97 -10.99 -0.03 8.84 16 22 N -0.84 -12.43 8.43 31.22 0.26 -12.17 16 23 O -0.55 -10.73 15.97 5.56 0.09 -10.64 16 24 H 0.07 0.75 6.47 -51.93 -0.34 0.42 16 25 H 0.06 0.75 6.73 -51.93 -0.35 0.41 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.76 7.15 -51.93 -0.37 0.39 16 30 H 0.06 0.70 6.45 -51.93 -0.33 0.37 16 31 H 0.07 1.03 6.62 -51.93 -0.34 0.69 16 32 H 0.08 1.47 5.37 -51.93 -0.28 1.19 16 33 H 0.07 1.05 6.24 -51.93 -0.32 0.72 16 34 H 0.40 6.85 7.73 -40.82 -0.32 6.53 16 35 H 0.13 2.99 3.74 -52.48 -0.20 2.79 16 36 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 37 H 0.27 6.07 8.29 -40.82 -0.34 5.73 16 38 H 0.40 5.70 8.19 -40.82 -0.33 5.36 16 39 H 0.40 5.26 8.93 -40.82 -0.36 4.90 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -30.23 309.42 -6.40 -36.63 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -4.79 Total: 20.39 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.83 Total: 2.18 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: 0.49 Total: -65.74 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.23 -6.40 -36.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156651222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.515 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds