Wall clock time and date at job start Tue Mar 31 2020 00:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47112 * 2 1 4 4 C 1.53002 * 109.47244 * 240.00202 * 2 1 3 5 5 C 1.53005 * 109.47120 * 64.99558 * 4 2 1 6 6 N 1.46501 * 109.47529 * 184.99957 * 4 2 1 7 7 C 1.38820 * 119.99891 * 178.35714 * 6 4 2 8 8 C 1.39960 * 119.97544 * 353.66484 * 7 6 4 9 9 N 1.32125 * 120.32214 * 179.75276 * 8 7 6 10 10 C 1.31929 * 120.27132 * 0.52791 * 9 8 7 11 11 C 1.40683 * 119.93104 * 359.73180 * 10 9 8 12 12 C 1.41270 * 120.15431 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00179 * 353.84518 * 12 11 10 14 14 C 1.40052 * 120.00005 * 173.84639 * 12 11 10 15 15 N 1.30733 * 120.00187 * 6.17894 * 14 12 11 16 16 Si 1.86801 * 120.00240 * 186.18413 * 14 12 11 17 17 H 1.48505 * 109.47013 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47626 * 119.99995 * 16 14 12 19 19 H 1.48505 * 109.47187 * 239.99925 * 16 14 12 20 20 N 1.32243 * 119.96651 * 173.94883 * 7 6 4 21 21 C 1.50703 * 109.47089 * 305.00126 * 4 2 1 22 22 N 1.34773 * 119.99775 * 274.99858 * 21 4 2 23 23 O 1.21280 * 120.00593 * 94.99283 * 21 4 2 24 24 H 1.08990 * 109.47448 * 60.00066 * 1 2 3 25 25 H 1.09005 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47264 * 299.99600 * 1 2 3 27 27 H 1.09002 * 109.47502 * 120.00358 * 2 1 3 28 28 H 1.09002 * 109.46729 * 60.00072 * 3 2 1 29 29 H 1.09001 * 109.46864 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46758 * 300.00316 * 3 2 1 31 31 H 1.09001 * 109.46611 * 64.47614 * 5 4 2 32 32 H 1.08998 * 109.47141 * 184.48012 * 5 4 2 33 33 H 1.09002 * 109.47288 * 304.48519 * 5 4 2 34 34 H 0.97001 * 119.99555 * 358.34904 * 6 4 2 35 35 H 1.08005 * 119.83589 * 0.02860 * 8 7 6 36 36 H 1.07997 * 120.03738 * 179.74806 * 10 9 8 37 37 H 0.97000 * 119.99936 * 179.97438 * 15 14 12 38 38 H 0.97005 * 120.00218 * 0.02562 * 22 21 4 39 39 H 0.97000 * 120.00433 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6351 0.0690 -2.4954 6 7 3.5001 -0.8264 -1.1907 7 6 4.1903 -1.4768 -2.2044 8 6 3.4863 -2.1459 -3.2121 9 7 4.1362 -2.7631 -4.1828 10 6 5.4554 -2.7627 -4.2050 11 6 6.1742 -2.0981 -3.1947 12 6 7.5868 -2.0952 -3.2136 13 1 8.1183 -2.6850 -3.9457 14 6 8.2979 -1.3274 -2.2829 15 7 7.6615 -0.7099 -1.3223 16 14 10.1559 -1.1854 -2.4142 17 1 10.6315 -1.9732 -3.5798 18 1 10.5322 0.2400 -2.5928 19 1 10.7814 -1.7107 -1.1739 20 7 5.5127 -1.4682 -2.2140 21 6 1.4391 -2.1018 -1.3128 22 7 2.0181 -3.1200 -0.6462 23 8 0.4344 -2.2966 -1.9637 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 2.1334 1.0384 -2.4885 32 1 1.9285 -0.4842 -3.3876 33 1 0.5551 0.2157 -2.4975 34 1 3.9844 -0.4414 -0.4436 35 1 2.4064 -2.1541 -3.1985 36 1 5.9828 -3.2718 -4.9981 37 1 8.1541 -0.1784 -0.6775 38 1 2.8214 -2.9642 -0.1253 39 1 1.6312 -4.0086 -0.6868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156651222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:24 Heat of formation + Delta-G solvation = -17.830349 kcal Electronic energy + Delta-G solvation = -22697.836457 eV Core-core repulsion = 19446.311774 eV Total energy + Delta-G solvation = -3251.524683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94921 -40.37801 -38.10142 -35.92274 -35.33905 -34.41744 -33.35456 -31.17409 -29.93919 -28.12601 -27.78917 -25.99536 -24.34094 -23.22144 -22.24643 -20.24364 -19.43085 -18.45189 -18.31806 -17.91447 -17.43255 -16.79596 -16.52359 -16.07373 -15.72206 -15.33191 -14.98087 -14.75287 -14.39202 -13.99445 -13.87178 -13.45832 -13.30501 -13.24795 -12.99107 -12.75119 -12.63500 -12.43363 -12.25038 -12.04836 -11.98275 -11.82180 -11.59138 -11.47063 -11.36043 -10.90315 -10.62328 -10.21199 -9.32959 -8.58508 -8.33452 -6.62269 0.81219 1.23568 1.45002 1.52666 1.56930 1.59897 2.22545 2.30391 2.59672 2.83656 3.58169 3.69667 3.92133 3.94301 4.15135 4.23831 4.29866 4.38364 4.46973 4.57957 4.71905 4.80054 4.84570 4.91725 4.95112 5.01347 5.11668 5.14399 5.18307 5.21366 5.41812 5.47098 5.67237 5.83615 6.09541 6.13932 6.37941 6.63690 6.65195 6.97551 7.27787 7.46783 8.04736 8.34889 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.005584 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.504000 B = 5012.708249 C = 5694.905071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.145 4.145 4 C 0.180 3.820 5 C -0.155 4.155 6 N -0.705 5.705 7 C 0.376 3.624 8 C -0.174 4.174 9 N -0.422 5.422 10 C -0.133 4.133 11 C 0.216 3.784 12 C -0.437 4.437 13 H 0.098 0.902 14 C 0.027 3.973 15 N -0.735 5.735 16 Si 0.990 3.010 17 H -0.255 1.255 18 H -0.268 1.268 19 H -0.264 1.264 20 N -0.525 5.525 21 C 0.522 3.478 22 N -0.835 5.835 23 O -0.580 6.580 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.406 0.594 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.284 0.716 38 H 0.408 0.592 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 4.335 8.609 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.202 4.202 4 C 0.089 3.911 5 C -0.213 4.213 6 N -0.345 5.345 7 C 0.131 3.869 8 C -0.337 4.337 9 N -0.134 5.134 10 C -0.301 4.301 11 C 0.089 3.911 12 C -0.469 4.469 13 H 0.116 0.884 14 C -0.197 4.197 15 N -0.356 5.356 16 Si 0.810 3.190 17 H -0.178 1.178 18 H -0.193 1.193 19 H -0.189 1.189 20 N -0.252 5.252 21 C 0.307 3.693 22 N -0.396 5.396 23 O -0.459 6.459 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.244 0.756 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.237 0.763 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.723 4.494 8.282 11.575 hybrid contribution 1.122 -0.410 0.065 1.197 sum -5.600 4.085 8.347 10.850 Atomic orbital electron populations 1.21895 0.92858 1.01987 1.03523 1.21271 0.97367 0.97438 0.94049 1.21891 1.01067 0.93935 1.03350 1.20497 0.79691 0.91510 0.99400 1.22267 1.02795 1.00150 0.96085 1.44238 1.03698 1.62418 1.24096 1.19582 0.90679 0.88658 0.87963 1.22420 0.98772 1.13270 0.99204 1.67505 1.10236 1.13194 1.22459 1.23073 0.90050 1.12751 1.04258 1.19476 0.95244 0.88514 0.87897 1.20043 0.89822 1.23358 1.13694 0.88407 1.26991 1.05842 0.93505 0.93378 1.70148 1.39279 1.17712 1.08433 0.85029 0.75203 0.79069 0.79698 1.17790 1.19263 1.18891 1.69069 1.03644 1.25802 1.26711 1.21044 0.83049 0.88202 0.77032 1.43714 1.31680 1.11806 1.52406 1.90697 1.27257 1.85112 1.42863 0.91892 0.93795 0.89526 0.89033 0.89870 0.92934 0.91959 0.90534 0.94055 0.89642 0.75617 0.85039 0.84405 0.90533 0.76285 0.76559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.53 71.98 0.61 -2.29 16 2 C -0.08 -1.77 2.32 -10.79 -0.03 -1.80 16 3 C -0.15 -2.78 8.58 71.98 0.62 -2.16 16 4 C 0.18 5.38 0.47 2.86 0.00 5.39 16 5 C -0.15 -4.95 7.00 71.98 0.50 -4.45 16 6 N -0.71 -24.69 4.26 -307.87 -1.31 -26.00 16 7 C 0.38 17.32 7.08 133.37 0.94 18.26 16 8 C -0.17 -8.51 8.48 85.07 0.72 -7.78 16 9 N -0.42 -22.29 10.47 -192.23 -2.01 -24.31 16 10 C -0.13 -7.01 10.97 85.28 0.94 -6.07 16 11 C 0.22 11.73 6.54 40.15 0.26 12.00 16 12 C -0.44 -22.37 9.15 23.46 0.21 -22.15 16 13 H 0.10 4.66 7.85 -2.91 -0.02 4.64 16 14 C 0.03 1.27 5.49 85.30 0.47 1.74 16 15 N -0.73 -35.73 11.51 21.84 0.25 -35.48 16 16 Si 0.99 35.03 29.56 68.60 2.03 37.06 16 17 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 18 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 19 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 20 N -0.53 -27.43 8.10 -186.00 -1.51 -28.94 16 21 C 0.52 17.34 2.97 87.66 0.26 17.60 16 22 N -0.83 -24.06 8.43 -173.53 -1.46 -25.53 16 23 O -0.58 -22.54 15.97 -3.03 -0.05 -22.59 16 24 H 0.06 1.30 6.47 -2.39 -0.02 1.28 16 25 H 0.04 1.03 6.73 -2.38 -0.02 1.01 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.13 7.15 -2.39 -0.02 1.12 16 30 H 0.06 1.22 6.45 -2.39 -0.02 1.20 16 31 H 0.08 2.27 6.62 -2.39 -0.02 2.26 16 32 H 0.04 1.61 5.37 -2.39 -0.01 1.60 16 33 H 0.08 2.46 6.24 -2.39 -0.01 2.44 16 34 H 0.41 13.44 7.73 -92.71 -0.72 12.72 16 35 H 0.13 6.27 3.74 -2.91 -0.01 6.26 16 36 H 0.14 6.73 8.06 -2.91 -0.02 6.71 16 37 H 0.28 12.27 8.29 -92.71 -0.77 11.50 16 38 H 0.41 11.15 8.19 -92.70 -0.76 10.39 16 39 H 0.40 10.51 8.93 -92.71 -0.83 9.68 16 Total: -1.00 -65.62 309.42 0.28 -65.34 By element: Atomic # 1 Polarization: 53.36 SS G_CDS: -1.17 Total: 52.18 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.52 Total: 8.26 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -6.04 Total: -140.25 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Total: -65.62 0.28 -65.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156651222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.505 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds