Wall clock time and date at job start Tue Mar 31 2020 00:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47274 * 2 1 4 4 C 1.53007 * 109.46878 * 119.99842 * 2 1 3 5 5 C 1.53001 * 109.47194 * 184.99961 * 4 2 1 6 6 N 1.46502 * 109.46895 * 65.00052 * 4 2 1 7 7 C 1.38823 * 119.99763 * 182.83004 * 6 4 2 8 8 C 1.39969 * 119.97081 * 4.86402 * 7 6 4 9 9 N 1.32124 * 120.31883 * 179.97438 * 8 7 6 10 10 C 1.31934 * 120.27126 * 359.70652 * 9 8 7 11 11 C 1.40678 * 119.93549 * 0.56633 * 10 9 8 12 12 C 1.41263 * 120.16263 * 179.70281 * 11 10 9 13 13 H 1.07998 * 120.01007 * 205.21948 * 12 11 10 14 14 C 1.40061 * 119.99636 * 25.21894 * 12 11 10 15 15 N 1.30732 * 119.99891 * 17.36204 * 14 12 11 16 16 Si 1.86801 * 120.00259 * 197.35974 * 14 12 11 17 17 H 1.48497 * 109.46965 * 265.02130 * 16 14 12 18 18 H 1.48503 * 109.46626 * 25.01674 * 16 14 12 19 19 H 1.48500 * 109.47285 * 145.01545 * 16 14 12 20 20 N 1.32233 * 119.97132 * 184.84246 * 7 6 4 21 21 C 1.50701 * 109.46887 * 305.00057 * 4 2 1 22 22 N 1.34773 * 119.99875 * 85.00136 * 21 4 2 23 23 O 1.21284 * 119.99941 * 264.99704 * 21 4 2 24 24 H 1.09008 * 109.46856 * 60.00386 * 1 2 3 25 25 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47277 * 300.00367 * 1 2 3 27 27 H 1.08999 * 109.47277 * 239.99633 * 2 1 3 28 28 H 1.08992 * 109.47116 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47031 * 299.99712 * 3 2 1 30 30 H 1.08995 * 109.46787 * 59.99654 * 3 2 1 31 31 H 1.08999 * 109.46903 * 306.52348 * 5 4 2 32 32 H 1.09004 * 109.46906 * 66.51864 * 5 4 2 33 33 H 1.08989 * 109.47306 * 186.52044 * 5 4 2 34 34 H 0.96999 * 120.00123 * 2.82749 * 6 4 2 35 35 H 1.08002 * 119.84118 * 359.95576 * 8 7 6 36 36 H 1.08003 * 120.03194 * 180.29878 * 10 9 8 37 37 H 0.96999 * 120.00088 * 179.97438 * 15 14 12 38 38 H 0.96999 * 120.00452 * 0.02562 * 22 21 4 39 39 H 0.97007 * 119.99953 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 1.6523 -2.1329 1.1906 7 6 1.9548 -2.9802 2.2478 8 6 2.5381 -2.4657 3.4115 9 7 2.8284 -3.2658 4.4220 10 6 2.5654 -4.5564 4.3453 11 6 1.9845 -5.0863 3.1787 12 6 1.7067 -6.4684 3.0889 13 1 1.6560 -6.9475 2.1223 14 6 1.4970 -7.2176 4.2536 15 7 1.2204 -6.6126 5.3790 16 14 1.6123 -9.0813 4.1988 17 1 0.2561 -9.6557 4.0092 18 1 2.4854 -9.4901 3.0693 19 1 2.1872 -9.5793 5.4742 20 7 1.6911 -4.2726 2.1548 21 6 1.4390 -0.0859 2.4766 22 7 0.2220 -0.4721 2.9080 23 8 2.0506 0.7730 3.0761 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.9940 -0.9672 0.3765 32 1 3.8489 0.4268 1.4738 33 1 3.9376 -1.2226 2.1370 34 1 1.1843 -2.4754 0.4131 35 1 2.7523 -1.4096 3.4836 36 1 2.7998 -5.2062 5.1755 37 1 1.0748 -7.1315 6.1855 38 1 -0.2670 -1.1592 2.4289 39 1 -0.1647 -0.0633 3.6982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156651223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:33 Heat of formation + Delta-G solvation = -1.153845 kcal Electronic energy + Delta-G solvation = -22560.876600 eV Core-core repulsion = 19310.075064 eV Total energy + Delta-G solvation = -3250.801536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 5.68 seconds Orbital eigenvalues (eV) -40.67991 -38.72898 -36.68336 -34.42905 -33.60112 -33.22229 -32.11958 -29.81040 -28.60681 -26.81342 -26.04543 -24.26029 -22.61900 -21.78314 -21.26907 -19.15618 -17.85250 -17.13977 -16.74012 -16.35125 -15.67082 -15.45951 -14.89532 -14.66125 -14.36384 -13.93750 -13.58098 -13.29405 -13.09821 -13.05319 -12.52337 -12.30166 -12.04953 -11.70211 -11.62819 -11.42880 -11.23633 -11.14093 -10.94860 -10.92289 -10.69285 -10.45734 -10.20224 -9.74968 -9.69101 -9.43344 -9.30818 -8.62294 -7.36098 -7.03253 -6.84960 -4.69676 2.55721 2.84315 2.96669 2.99237 3.05025 3.13363 3.62622 3.79108 3.84922 4.49513 4.57108 4.78360 4.92504 5.17839 5.40914 5.42898 5.54802 5.72346 5.72875 5.78826 5.87418 5.88684 6.01038 6.09522 6.14150 6.19260 6.23230 6.40263 6.54191 6.81495 6.96302 7.01783 7.06677 7.57794 7.66996 7.73135 8.09341 8.21403 8.45806 8.53437 8.66708 9.31044 9.76494 9.95621 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.004680 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.090739 B = 5982.044050 C = 6216.602268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.090 4.090 3 C -0.149 4.149 4 C 0.180 3.820 5 C -0.162 4.162 6 N -0.728 5.728 7 C 0.365 3.635 8 C -0.155 4.155 9 N -0.416 5.416 10 C -0.035 4.035 11 C 0.263 3.737 12 C -0.425 4.425 13 H 0.089 0.911 14 C 0.077 3.923 15 N -0.779 5.779 16 Si 0.923 3.077 17 H -0.268 1.268 18 H -0.257 1.257 19 H -0.272 1.272 20 N -0.578 5.578 21 C 0.529 3.471 22 N -0.843 5.843 23 O -0.549 6.549 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.397 0.603 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.288 0.712 38 H 0.403 0.597 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 8.049 -8.356 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.109 4.109 3 C -0.207 4.207 4 C 0.088 3.912 5 C -0.220 4.220 6 N -0.367 5.367 7 C 0.126 3.874 8 C -0.314 4.314 9 N -0.128 5.128 10 C -0.206 4.206 11 C 0.134 3.866 12 C -0.459 4.459 13 H 0.107 0.893 14 C -0.145 4.145 15 N -0.404 5.404 16 Si 0.746 3.254 17 H -0.193 1.193 18 H -0.181 1.181 19 H -0.197 1.197 20 N -0.306 5.306 21 C 0.313 3.687 22 N -0.406 5.406 23 O -0.427 6.427 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.233 0.767 35 H 0.148 0.852 36 H 0.172 0.828 37 H 0.099 0.901 38 H 0.232 0.768 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.924 8.765 -7.770 11.870 hybrid contribution -0.721 -1.218 -0.063 1.417 sum -2.646 7.548 -7.833 11.195 Atomic orbital electron populations 1.22069 0.94611 1.02515 1.02587 1.21271 0.96424 0.97018 0.96210 1.21911 1.01979 0.94549 1.02263 1.20324 0.95891 0.81749 0.93186 1.22303 0.92718 1.03537 1.03456 1.44246 1.66143 1.05772 1.20582 1.19177 0.91787 0.89464 0.87014 1.22362 1.17100 0.99489 0.92485 1.67772 1.12707 1.05421 1.26914 1.23526 1.05123 0.90863 1.01092 1.19060 0.87103 0.93204 0.87233 1.19329 1.41082 0.91223 0.94242 0.89283 1.26025 0.91725 1.02317 0.94414 1.69763 1.30484 1.39131 1.01047 0.86057 0.79594 0.80522 0.79222 1.19308 1.18087 1.19707 1.68412 1.28028 1.00972 1.33188 1.20710 0.80930 0.81434 0.85620 1.43884 1.20189 1.43774 1.32707 1.90715 1.60968 1.33119 1.57850 0.92036 0.91950 0.91885 0.89407 0.91612 0.92268 0.91916 0.91802 0.90534 0.90390 0.76735 0.85205 0.82779 0.90110 0.76767 0.77332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.11 37.16 0.30 -1.28 16 2 C -0.09 -1.00 2.31 -90.62 -0.21 -1.21 16 3 C -0.15 -1.57 8.50 37.16 0.32 -1.25 16 4 C 0.18 2.67 0.48 -132.97 -0.06 2.60 16 5 C -0.16 -2.51 7.29 37.16 0.27 -2.24 16 6 N -0.73 -12.26 4.21 -48.66 -0.20 -12.47 16 7 C 0.36 8.16 7.00 -155.02 -1.08 7.07 16 8 C -0.15 -3.72 8.30 -16.78 -0.14 -3.86 16 9 N -0.42 -11.08 10.47 -12.11 -0.13 -11.20 16 10 C -0.03 -0.95 9.87 -16.59 -0.16 -1.12 16 11 C 0.26 7.10 6.40 -84.84 -0.54 6.55 16 12 C -0.42 -10.99 9.29 -37.75 -0.35 -11.34 16 13 H 0.09 2.24 7.90 -52.49 -0.41 1.83 16 14 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 15 N -0.78 -19.20 10.97 55.55 0.61 -18.59 16 16 Si 0.92 17.60 29.59 -169.99 -5.03 12.57 16 17 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 N -0.58 -14.63 10.49 -10.14 -0.11 -14.73 16 21 C 0.53 8.73 2.50 -10.99 -0.03 8.70 16 22 N -0.84 -12.27 7.08 31.22 0.22 -12.05 16 23 O -0.55 -10.59 15.80 5.55 0.09 -10.50 16 24 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.06 0.61 7.24 -51.93 -0.38 0.24 16 26 H 0.06 0.66 6.26 -51.93 -0.32 0.34 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.68 6.49 -51.93 -0.34 0.34 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.76 6.97 -51.93 -0.36 0.40 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.12 6.23 -51.93 -0.32 0.80 16 33 H 0.08 1.46 5.38 -51.94 -0.28 1.18 16 34 H 0.40 6.08 7.88 -40.82 -0.32 5.75 16 35 H 0.13 3.03 3.90 -52.49 -0.20 2.82 16 36 H 0.16 4.22 6.18 -52.48 -0.32 3.90 16 37 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 38 H 0.40 5.60 7.60 -40.82 -0.31 5.29 16 39 H 0.40 5.30 8.93 -40.82 -0.36 4.93 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -30.37 306.93 -6.48 -36.84 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -4.77 Total: 21.15 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -1.78 Total: 4.36 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: 0.39 Total: -69.04 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.37 -6.48 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156651223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.689 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.68 seconds