Wall clock time and date at job start Tue Mar 31 2020 00:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47274 * 2 1 4 4 C 1.53007 * 109.46878 * 119.99842 * 2 1 3 5 5 C 1.53001 * 109.47194 * 184.99961 * 4 2 1 6 6 N 1.46502 * 109.46895 * 65.00052 * 4 2 1 7 7 C 1.38823 * 119.99763 * 182.83004 * 6 4 2 8 8 C 1.39969 * 119.97081 * 4.86402 * 7 6 4 9 9 N 1.32124 * 120.31883 * 179.97438 * 8 7 6 10 10 C 1.31934 * 120.27126 * 359.70652 * 9 8 7 11 11 C 1.40678 * 119.93549 * 0.56633 * 10 9 8 12 12 C 1.41263 * 120.16263 * 179.70281 * 11 10 9 13 13 H 1.07998 * 120.01007 * 205.21948 * 12 11 10 14 14 C 1.40061 * 119.99636 * 25.21894 * 12 11 10 15 15 N 1.30732 * 119.99891 * 17.36204 * 14 12 11 16 16 Si 1.86801 * 120.00259 * 197.35974 * 14 12 11 17 17 H 1.48497 * 109.46965 * 265.02130 * 16 14 12 18 18 H 1.48503 * 109.46626 * 25.01674 * 16 14 12 19 19 H 1.48500 * 109.47285 * 145.01545 * 16 14 12 20 20 N 1.32233 * 119.97132 * 184.84246 * 7 6 4 21 21 C 1.50701 * 109.46887 * 305.00057 * 4 2 1 22 22 N 1.34773 * 119.99875 * 85.00136 * 21 4 2 23 23 O 1.21284 * 119.99941 * 264.99704 * 21 4 2 24 24 H 1.09008 * 109.46856 * 60.00386 * 1 2 3 25 25 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47277 * 300.00367 * 1 2 3 27 27 H 1.08999 * 109.47277 * 239.99633 * 2 1 3 28 28 H 1.08992 * 109.47116 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47031 * 299.99712 * 3 2 1 30 30 H 1.08995 * 109.46787 * 59.99654 * 3 2 1 31 31 H 1.08999 * 109.46903 * 306.52348 * 5 4 2 32 32 H 1.09004 * 109.46906 * 66.51864 * 5 4 2 33 33 H 1.08989 * 109.47306 * 186.52044 * 5 4 2 34 34 H 0.96999 * 120.00123 * 2.82749 * 6 4 2 35 35 H 1.08002 * 119.84118 * 359.95576 * 8 7 6 36 36 H 1.08003 * 120.03194 * 180.29878 * 10 9 8 37 37 H 0.96999 * 120.00088 * 179.97438 * 15 14 12 38 38 H 0.96999 * 120.00452 * 0.02562 * 22 21 4 39 39 H 0.97007 * 119.99953 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 1.6523 -2.1329 1.1906 7 6 1.9548 -2.9802 2.2478 8 6 2.5381 -2.4657 3.4115 9 7 2.8284 -3.2658 4.4220 10 6 2.5654 -4.5564 4.3453 11 6 1.9845 -5.0863 3.1787 12 6 1.7067 -6.4684 3.0889 13 1 1.6560 -6.9475 2.1223 14 6 1.4970 -7.2176 4.2536 15 7 1.2204 -6.6126 5.3790 16 14 1.6123 -9.0813 4.1988 17 1 0.2561 -9.6557 4.0092 18 1 2.4854 -9.4901 3.0693 19 1 2.1872 -9.5793 5.4742 20 7 1.6911 -4.2726 2.1548 21 6 1.4390 -0.0859 2.4766 22 7 0.2220 -0.4721 2.9080 23 8 2.0506 0.7730 3.0761 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.9940 -0.9672 0.3765 32 1 3.8489 0.4268 1.4738 33 1 3.9376 -1.2226 2.1370 34 1 1.1843 -2.4754 0.4131 35 1 2.7523 -1.4096 3.4836 36 1 2.7998 -5.2062 5.1755 37 1 1.0748 -7.1315 6.1855 38 1 -0.2670 -1.1592 2.4289 39 1 -0.1647 -0.0633 3.6982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156651223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:31 Heat of formation + Delta-G solvation = -24.624362 kcal Electronic energy + Delta-G solvation = -22561.894358 eV Core-core repulsion = 19310.075064 eV Total energy + Delta-G solvation = -3251.819294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 5.05 seconds Orbital eigenvalues (eV) -42.07535 -40.52313 -38.01441 -36.11313 -35.18583 -34.57343 -33.87065 -31.25352 -30.18488 -27.95751 -27.75154 -25.54553 -24.34143 -23.57271 -22.55999 -20.42038 -19.62554 -18.70226 -18.01487 -17.84364 -17.41226 -17.16770 -16.37733 -16.30191 -15.50175 -15.42454 -15.02781 -14.75025 -14.57079 -14.30261 -13.78327 -13.51693 -13.28410 -13.08752 -13.02875 -12.91824 -12.73231 -12.61836 -12.35706 -12.03504 -11.94930 -11.89393 -11.74298 -11.64109 -11.38625 -10.95982 -10.61016 -10.36531 -9.32704 -8.84858 -8.61473 -6.65818 0.69853 1.07301 1.42355 1.50906 1.54006 1.60581 2.15356 2.23647 2.58343 2.65945 3.51913 3.67441 3.79970 3.93675 4.10253 4.16316 4.28754 4.33362 4.49455 4.53662 4.74492 4.75926 4.78980 4.92412 4.97035 5.02005 5.03248 5.08676 5.19211 5.22607 5.36274 5.42776 5.68270 5.79748 5.99102 6.24350 6.36915 6.45508 6.59468 6.85576 7.25552 7.36449 7.82515 8.16635 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.004680 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.090739 B = 5982.044050 C = 6216.602268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.084 4.084 3 C -0.147 4.147 4 C 0.178 3.822 5 C -0.160 4.160 6 N -0.705 5.705 7 C 0.381 3.619 8 C -0.162 4.162 9 N -0.434 5.434 10 C -0.070 4.070 11 C 0.240 3.760 12 C -0.448 4.448 13 H 0.090 0.910 14 C 0.041 3.959 15 N -0.805 5.805 16 Si 1.002 2.998 17 H -0.258 1.258 18 H -0.255 1.255 19 H -0.262 1.262 20 N -0.595 5.595 21 C 0.524 3.476 22 N -0.835 5.835 23 O -0.580 6.580 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.409 0.591 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.299 0.701 38 H 0.407 0.593 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 7.710 -10.297 13.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.103 4.103 3 C -0.205 4.205 4 C 0.087 3.913 5 C -0.219 4.219 6 N -0.344 5.344 7 C 0.138 3.862 8 C -0.323 4.323 9 N -0.146 5.146 10 C -0.239 4.239 11 C 0.112 3.888 12 C -0.482 4.482 13 H 0.108 0.892 14 C -0.179 4.179 15 N -0.430 5.430 16 Si 0.820 3.180 17 H -0.182 1.182 18 H -0.179 1.179 19 H -0.186 1.186 20 N -0.324 5.324 21 C 0.309 3.691 22 N -0.397 5.397 23 O -0.460 6.460 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.247 0.753 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.110 0.890 38 H 0.238 0.762 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.714 8.438 -9.722 13.156 hybrid contribution -0.520 -0.965 0.513 1.211 sum -3.234 7.473 -9.209 12.292 Atomic orbital electron populations 1.22081 0.93490 1.02802 1.03371 1.21341 0.97335 0.97052 0.94533 1.21906 1.02034 0.93941 1.02592 1.20589 0.95644 0.80420 0.94624 1.22290 0.93103 1.03428 1.03050 1.44228 1.64915 1.06004 1.19284 1.19280 0.89981 0.89159 0.87748 1.22510 1.17533 0.99454 0.92794 1.67656 1.13065 1.05629 1.28279 1.23292 1.07969 0.91061 1.01558 1.19340 0.87573 0.94197 0.87663 1.19635 1.41947 0.91344 0.95248 0.89233 1.26995 0.90319 1.07321 0.93273 1.69801 1.29743 1.41518 1.01942 0.84903 0.79954 0.73595 0.79542 1.18206 1.17858 1.18598 1.68494 1.29145 1.01884 1.32868 1.21006 0.81107 0.81151 0.85866 1.43856 1.19715 1.43420 1.32743 1.90701 1.61832 1.34637 1.58832 0.89634 0.91896 0.92811 0.87275 0.91585 0.89596 0.93888 0.89685 0.89730 0.93992 0.75252 0.84639 0.84067 0.88972 0.76241 0.76709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.11 71.98 0.58 -2.09 16 2 C -0.08 -1.61 2.31 -10.79 -0.02 -1.63 16 3 C -0.15 -2.69 8.50 71.98 0.61 -2.07 16 4 C 0.18 4.99 0.48 2.86 0.00 5.00 16 5 C -0.16 -4.81 7.29 71.98 0.52 -4.29 16 6 N -0.70 -22.76 4.21 -307.87 -1.30 -24.05 16 7 C 0.38 17.01 7.00 133.38 0.93 17.95 16 8 C -0.16 -7.93 8.30 85.07 0.71 -7.23 16 9 N -0.43 -23.91 10.47 -192.22 -2.01 -25.92 16 10 C -0.07 -3.93 9.87 85.27 0.84 -3.09 16 11 C 0.24 13.29 6.40 40.15 0.26 13.54 16 12 C -0.45 -23.53 9.29 23.46 0.22 -23.31 16 13 H 0.09 4.54 7.90 -2.91 -0.02 4.52 16 14 C 0.04 1.92 5.14 85.30 0.44 2.36 16 15 N -0.81 -40.13 10.97 21.84 0.24 -39.89 16 16 Si 1.00 35.31 29.59 68.60 2.03 37.34 16 17 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 18 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 19 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 20 N -0.60 -30.34 10.49 -186.00 -1.95 -32.29 16 21 C 0.52 16.96 2.50 87.66 0.22 17.18 16 22 N -0.84 -23.83 7.08 -173.53 -1.23 -25.05 16 23 O -0.58 -22.37 15.80 -3.04 -0.05 -22.42 16 24 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.06 1.05 7.24 -2.39 -0.02 1.03 16 26 H 0.05 1.01 6.26 -2.39 -0.01 0.99 16 27 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.20 6.49 -2.39 -0.02 1.18 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.97 6.97 -2.39 -0.02 0.95 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.40 6.23 -2.38 -0.01 2.38 16 33 H 0.04 1.57 5.38 -2.39 -0.01 1.56 16 34 H 0.41 11.57 7.88 -92.71 -0.73 10.84 16 35 H 0.14 6.43 3.90 -2.91 -0.01 6.42 16 36 H 0.14 8.14 6.18 -2.91 -0.02 8.12 16 37 H 0.30 13.20 8.29 -92.71 -0.77 12.43 16 38 H 0.41 10.91 7.60 -92.71 -0.70 10.20 16 39 H 0.40 10.63 8.93 -92.70 -0.83 9.80 16 Total: -1.00 -67.56 306.93 -0.09 -67.65 By element: Atomic # 1 Polarization: 53.44 SS G_CDS: -1.13 Total: 52.31 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.31 Total: 12.32 kcal Atomic # 7 Polarization: -140.95 SS G_CDS: -6.25 Total: -147.20 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -67.56 -0.09 -67.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156651223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.024 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.05 seconds