Wall clock time and date at job start Tue Mar 31 2020 00:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 H 1.08999 * 109.47048 * 53.65884 * 3 2 1 5 5 C 1.53009 * 109.46863 * 293.66479 * 3 2 1 6 6 C 1.52998 * 109.47085 * 173.66629 * 3 2 1 7 7 H 1.08997 * 109.46944 * 301.75571 * 6 3 2 8 8 N 1.46505 * 109.46841 * 181.75947 * 6 3 2 9 9 C 1.38822 * 120.00065 * 154.99929 * 8 6 3 10 10 C 1.39965 * 119.96945 * 0.02562 * 9 8 6 11 11 N 1.32122 * 120.31634 * 180.02562 * 10 9 8 12 12 C 1.31929 * 120.27616 * 359.95365 * 11 10 9 13 13 C 1.40685 * 119.93261 * 0.04430 * 12 11 10 14 14 C 1.41267 * 120.15616 * 180.25587 * 13 12 11 15 15 H 1.08000 * 120.00488 * 354.35160 * 14 13 12 16 16 C 1.40056 * 120.00061 * 174.34823 * 14 13 12 17 17 N 1.30735 * 119.99733 * 5.37141 * 16 14 13 18 18 Si 1.86793 * 120.00415 * 185.37171 * 16 14 13 19 19 H 1.48504 * 109.47213 * 59.99880 * 18 16 14 20 20 H 1.48497 * 109.47700 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47180 * 300.00377 * 18 16 14 22 22 N 1.32239 * 119.96814 * 179.97438 * 9 8 6 23 23 C 1.50693 * 109.47532 * 61.75835 * 6 3 2 24 24 N 1.34779 * 119.99837 * 279.96546 * 23 6 3 25 25 O 1.21281 * 120.00265 * 99.96252 * 23 6 3 26 26 H 1.09002 * 109.46646 * 299.99777 * 1 2 3 27 27 H 1.08998 * 109.47201 * 59.99293 * 1 2 3 28 28 H 1.08998 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46646 * 240.00223 * 2 1 3 30 30 H 1.09004 * 109.47614 * 120.00512 * 2 1 3 31 31 H 1.08996 * 109.46566 * 179.97438 * 5 3 2 32 32 H 1.08999 * 109.46803 * 299.99555 * 5 3 2 33 33 H 1.08995 * 109.46759 * 60.00201 * 5 3 2 34 34 H 0.97004 * 119.99869 * 334.99298 * 8 6 3 35 35 H 1.07998 * 119.84220 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.04095 * 180.02562 * 12 11 10 37 37 H 0.97005 * 119.99663 * 179.97438 * 17 16 14 38 38 H 0.97004 * 119.99927 * 354.35425 * 24 23 6 39 39 H 0.97000 * 120.00444 * 174.35753 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5871 1.9880 0.8278 5 6 1.6642 2.1163 -1.3213 6 6 3.5618 1.4453 0.1591 7 1 3.8311 0.9376 1.0853 8 7 4.0457 2.8275 0.2013 9 6 5.2443 3.1242 0.8357 10 6 5.9902 2.1023 1.4344 11 7 7.1316 2.3770 2.0405 12 6 7.5789 3.6173 2.0859 13 6 6.8381 4.6530 1.4877 14 6 7.3153 5.9820 1.5288 15 1 8.2023 6.2201 2.0971 16 6 6.6382 6.9911 0.8325 17 7 5.5080 6.7252 0.2315 18 14 7.3498 8.7167 0.7624 19 1 8.6885 8.6745 0.1209 20 1 6.4485 9.5922 -0.0291 21 1 7.4780 9.2557 2.1402 22 7 5.6808 4.3719 0.8730 23 6 4.1903 0.7284 -1.0078 24 7 4.2295 -0.6187 -1.0294 25 8 4.6608 1.3635 -1.9277 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0272 3.1440 -1.3211 32 1 2.1172 1.5708 -2.1491 33 1 0.5802 2.1143 -1.4346 34 1 3.5287 3.5353 -0.2142 35 1 5.6306 1.0845 1.4015 36 1 8.5126 3.8375 2.5819 37 1 5.0388 7.4241 -0.2505 38 1 3.9281 -1.1250 -0.2588 39 1 4.5590 -1.0818 -1.8153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158276318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:38 Heat of formation + Delta-G solvation = -2.978356 kcal Electronic energy + Delta-G solvation = -22047.517065 eV Core-core repulsion = 18796.636412 eV Total energy + Delta-G solvation = -3250.880653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07136 -38.62266 -36.62547 -34.49836 -33.80483 -33.28670 -31.61103 -30.22312 -28.57347 -26.77144 -25.80315 -23.89383 -22.34794 -21.68226 -20.76644 -19.52901 -17.63943 -16.99014 -16.83330 -16.36599 -15.53080 -15.26988 -15.06486 -14.80395 -14.42994 -13.96302 -13.63948 -13.60949 -13.06302 -12.97295 -12.88447 -12.21102 -12.01054 -11.68467 -11.46643 -11.34330 -11.24787 -10.98808 -10.84832 -10.64822 -10.59181 -10.36854 -10.25937 -9.71657 -9.43994 -9.36885 -9.34330 -8.32911 -7.35679 -6.72945 -6.40837 -4.62636 2.73020 2.91924 3.06660 3.08679 3.13657 3.30915 3.63869 3.90741 4.03180 4.67758 4.74423 4.77660 4.84301 5.13105 5.17027 5.36791 5.49055 5.54672 5.61671 5.82676 5.85784 5.92002 5.95216 6.01583 6.08722 6.22001 6.31192 6.36676 6.54712 6.75359 6.94751 7.07224 7.14806 7.45325 7.62164 7.95853 8.05929 8.44417 8.52548 8.59435 8.87443 9.43833 10.03683 10.22912 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.004862 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.049774 B = 5757.528466 C = 6345.492341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.091 4.091 4 H 0.090 0.910 5 C -0.152 4.152 6 C 0.152 3.848 7 H 0.097 0.903 8 N -0.705 5.705 9 C 0.378 3.622 10 C -0.172 4.172 11 N -0.407 5.407 12 C -0.107 4.107 13 C 0.246 3.754 14 C -0.415 4.415 15 H 0.090 0.910 16 C 0.067 3.933 17 N -0.707 5.707 18 Si 0.912 3.088 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.263 1.263 22 N -0.504 5.504 23 C 0.502 3.498 24 N -0.862 5.862 25 O -0.523 6.523 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.401 0.599 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.275 0.725 38 H 0.397 0.603 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 -10.193 -1.315 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.111 4.111 4 H 0.108 0.892 5 C -0.209 4.209 6 C 0.040 3.960 7 H 0.115 0.885 8 N -0.342 5.342 9 C 0.134 3.866 10 C -0.334 4.334 11 N -0.118 5.118 12 C -0.277 4.277 13 C 0.118 3.882 14 C -0.448 4.448 15 H 0.108 0.892 16 C -0.159 4.159 17 N -0.328 5.328 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.188 1.188 22 N -0.230 5.230 23 C 0.285 3.715 24 N -0.428 5.428 25 O -0.397 6.397 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.238 0.762 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.086 0.914 38 H 0.226 0.774 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.338 -9.687 -1.919 14.296 hybrid contribution 0.155 0.482 -0.268 0.573 sum -10.183 -9.204 -2.187 13.900 Atomic orbital electron populations 1.21781 0.95360 1.01534 1.02149 1.21723 0.96558 0.95675 1.02534 1.21358 0.92212 0.97393 1.00096 0.89172 1.21916 1.01206 1.01457 0.96357 1.20692 0.93554 0.85261 0.96460 0.88486 1.43782 1.22825 1.05403 1.62158 1.19450 0.86038 0.92227 0.88835 1.21798 0.98451 0.97246 1.15863 1.67466 1.10989 1.22111 1.11235 1.22894 1.03330 0.89215 1.12287 1.19087 0.87378 0.94057 0.87677 1.19594 1.09351 0.90786 1.25077 0.89186 1.26134 0.94358 1.01145 0.94288 1.70104 1.10484 1.33561 1.18653 0.86320 0.79919 0.80816 0.79415 1.18775 1.20209 1.18793 1.69018 1.15516 1.14257 1.24216 1.21626 0.78432 0.82327 0.89131 1.44070 1.69764 1.07500 1.21436 1.90750 1.44859 1.66178 1.37896 0.92578 0.92416 0.92768 0.91116 0.91488 0.91849 0.92389 0.92149 0.76159 0.86882 0.85245 0.91398 0.77410 0.77474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.69 37.16 0.36 -0.78 16 2 C -0.13 -1.08 4.31 -26.73 -0.12 -1.19 16 3 C -0.09 -1.06 2.34 -90.62 -0.21 -1.27 16 4 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 5 C -0.15 -1.88 8.53 37.16 0.32 -1.56 16 6 C 0.15 2.32 1.90 -69.08 -0.13 2.19 16 7 H 0.10 1.40 6.46 -51.93 -0.34 1.06 16 8 N -0.71 -14.36 4.74 -54.92 -0.26 -14.62 16 9 C 0.38 9.50 7.64 -155.02 -1.18 8.32 16 10 C -0.17 -4.25 10.33 -16.78 -0.17 -4.42 16 11 N -0.41 -10.65 10.47 -12.11 -0.13 -10.77 16 12 C -0.11 -2.85 10.97 -16.59 -0.18 -3.03 16 13 C 0.25 6.94 6.54 -84.83 -0.55 6.38 16 14 C -0.42 -11.11 9.15 -37.75 -0.35 -11.46 16 15 H 0.09 2.20 7.85 -52.49 -0.41 1.79 16 16 C 0.07 1.71 5.49 -17.34 -0.10 1.61 16 17 N -0.71 -18.74 11.50 55.55 0.64 -18.10 16 18 Si 0.91 18.46 29.56 -169.99 -5.03 13.43 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 N -0.50 -14.20 8.09 -10.14 -0.08 -14.29 16 23 C 0.50 8.03 5.48 -10.99 -0.06 7.97 16 24 N -0.86 -9.31 7.53 31.22 0.23 -9.07 16 25 O -0.52 -11.14 17.09 5.56 0.09 -11.04 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.45 6.61 -51.93 -0.34 0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.59 6.51 -51.93 -0.34 0.25 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.90 6.59 -51.93 -0.34 0.55 16 32 H 0.06 0.79 6.95 -51.93 -0.36 0.42 16 33 H 0.06 0.61 6.61 -51.93 -0.34 0.27 16 34 H 0.40 8.28 7.10 -40.82 -0.29 7.99 16 35 H 0.11 2.43 6.16 -52.49 -0.32 2.11 16 36 H 0.13 3.13 8.06 -52.49 -0.42 2.70 16 37 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 38 H 0.40 3.03 8.07 -40.82 -0.33 2.70 16 39 H 0.40 3.83 8.93 -40.82 -0.36 3.47 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -34.25 319.44 -7.12 -41.37 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.38 Total: 2.77 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: 0.40 Total: -66.86 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.25 -7.12 -41.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158276318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.389 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds