Wall clock time and date at job start Tue Mar 31 2020 00:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 H 1.08999 * 109.47048 * 53.65884 * 3 2 1 5 5 C 1.53009 * 109.46863 * 293.66479 * 3 2 1 6 6 C 1.52998 * 109.47085 * 173.66629 * 3 2 1 7 7 H 1.08997 * 109.46944 * 301.75571 * 6 3 2 8 8 N 1.46505 * 109.46841 * 181.75947 * 6 3 2 9 9 C 1.38822 * 120.00065 * 154.99929 * 8 6 3 10 10 C 1.39965 * 119.96945 * 0.02562 * 9 8 6 11 11 N 1.32122 * 120.31634 * 180.02562 * 10 9 8 12 12 C 1.31929 * 120.27616 * 359.95365 * 11 10 9 13 13 C 1.40685 * 119.93261 * 0.04430 * 12 11 10 14 14 C 1.41267 * 120.15616 * 180.25587 * 13 12 11 15 15 H 1.08000 * 120.00488 * 354.35160 * 14 13 12 16 16 C 1.40056 * 120.00061 * 174.34823 * 14 13 12 17 17 N 1.30735 * 119.99733 * 5.37141 * 16 14 13 18 18 Si 1.86793 * 120.00415 * 185.37171 * 16 14 13 19 19 H 1.48504 * 109.47213 * 59.99880 * 18 16 14 20 20 H 1.48497 * 109.47700 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47180 * 300.00377 * 18 16 14 22 22 N 1.32239 * 119.96814 * 179.97438 * 9 8 6 23 23 C 1.50693 * 109.47532 * 61.75835 * 6 3 2 24 24 N 1.34779 * 119.99837 * 279.96546 * 23 6 3 25 25 O 1.21281 * 120.00265 * 99.96252 * 23 6 3 26 26 H 1.09002 * 109.46646 * 299.99777 * 1 2 3 27 27 H 1.08998 * 109.47201 * 59.99293 * 1 2 3 28 28 H 1.08998 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46646 * 240.00223 * 2 1 3 30 30 H 1.09004 * 109.47614 * 120.00512 * 2 1 3 31 31 H 1.08996 * 109.46566 * 179.97438 * 5 3 2 32 32 H 1.08999 * 109.46803 * 299.99555 * 5 3 2 33 33 H 1.08995 * 109.46759 * 60.00201 * 5 3 2 34 34 H 0.97004 * 119.99869 * 334.99298 * 8 6 3 35 35 H 1.07998 * 119.84220 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.04095 * 180.02562 * 12 11 10 37 37 H 0.97005 * 119.99663 * 179.97438 * 17 16 14 38 38 H 0.97004 * 119.99927 * 354.35425 * 24 23 6 39 39 H 0.97000 * 120.00444 * 174.35753 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5871 1.9880 0.8278 5 6 1.6642 2.1163 -1.3213 6 6 3.5618 1.4453 0.1591 7 1 3.8311 0.9376 1.0853 8 7 4.0457 2.8275 0.2013 9 6 5.2443 3.1242 0.8357 10 6 5.9902 2.1023 1.4344 11 7 7.1316 2.3770 2.0405 12 6 7.5789 3.6173 2.0859 13 6 6.8381 4.6530 1.4877 14 6 7.3153 5.9820 1.5288 15 1 8.2023 6.2201 2.0971 16 6 6.6382 6.9911 0.8325 17 7 5.5080 6.7252 0.2315 18 14 7.3498 8.7167 0.7624 19 1 8.6885 8.6745 0.1209 20 1 6.4485 9.5922 -0.0291 21 1 7.4780 9.2557 2.1402 22 7 5.6808 4.3719 0.8730 23 6 4.1903 0.7284 -1.0078 24 7 4.2295 -0.6187 -1.0294 25 8 4.6608 1.3635 -1.9277 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0272 3.1440 -1.3211 32 1 2.1172 1.5708 -2.1491 33 1 0.5802 2.1143 -1.4346 34 1 3.5287 3.5353 -0.2142 35 1 5.6306 1.0845 1.4015 36 1 8.5126 3.8375 2.5819 37 1 5.0388 7.4241 -0.2505 38 1 3.9281 -1.1250 -0.2588 39 1 4.5590 -1.0818 -1.8153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158276318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:36 Heat of formation + Delta-G solvation = -29.321031 kcal Electronic energy + Delta-G solvation = -22048.659369 eV Core-core repulsion = 18796.636412 eV Total energy + Delta-G solvation = -3252.022957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.45378 -40.44609 -37.81732 -36.07645 -35.61736 -34.45576 -33.47732 -31.62502 -29.96738 -28.06645 -27.74962 -24.84301 -24.28815 -23.31647 -21.99589 -20.69850 -19.42742 -18.62546 -18.11419 -17.69405 -17.11998 -16.87535 -16.64086 -16.32148 -15.72087 -15.33448 -15.10815 -14.82315 -14.63396 -14.45912 -14.08236 -13.36521 -13.28771 -13.03120 -12.92969 -12.80935 -12.58229 -12.49199 -12.09222 -12.07348 -11.89371 -11.62894 -11.53375 -11.46535 -11.37920 -10.89569 -10.54376 -10.22132 -9.33742 -8.54691 -8.33202 -6.65166 0.82516 1.24317 1.41344 1.54521 1.57326 1.65042 2.20801 2.29078 2.71305 2.85558 3.63686 3.78982 3.91183 3.93824 4.08690 4.15827 4.34733 4.41351 4.51240 4.57836 4.65514 4.71123 4.77094 4.88954 4.99978 5.11847 5.13765 5.17114 5.21094 5.23774 5.42877 5.52885 5.67637 5.94297 6.07180 6.15280 6.48329 6.61775 6.67283 6.94148 7.39927 7.44234 8.06813 8.34914 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.004862 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.049774 B = 5757.528466 C = 6345.492341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.083 4.083 4 H 0.094 0.906 5 C -0.149 4.149 6 C 0.145 3.855 7 H 0.113 0.887 8 N -0.700 5.700 9 C 0.368 3.632 10 C -0.177 4.177 11 N -0.414 5.414 12 C -0.134 4.134 13 C 0.214 3.786 14 C -0.442 4.442 15 H 0.103 0.897 16 C 0.022 3.978 17 N -0.743 5.743 18 Si 0.995 3.005 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.252 1.252 22 N -0.539 5.539 23 C 0.503 3.497 24 N -0.834 5.834 25 O -0.584 6.584 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.397 0.603 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.282 0.718 38 H 0.417 0.583 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 -11.099 -0.955 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.102 4.102 4 H 0.112 0.888 5 C -0.206 4.206 6 C 0.035 3.965 7 H 0.130 0.870 8 N -0.334 5.334 9 C 0.123 3.877 10 C -0.339 4.339 11 N -0.125 5.125 12 C -0.303 4.303 13 C 0.087 3.913 14 C -0.474 4.474 15 H 0.121 0.879 16 C -0.202 4.202 17 N -0.364 5.364 18 Si 0.814 3.186 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.176 1.176 22 N -0.266 5.266 23 C 0.286 3.714 24 N -0.400 5.400 25 O -0.463 6.463 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.233 0.767 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.093 0.907 38 H 0.249 0.751 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.357 -10.696 -1.528 15.675 hybrid contribution 0.351 0.616 -0.410 0.819 sum -11.007 -10.079 -1.938 15.050 Atomic orbital electron populations 1.21774 0.94310 1.02561 1.02069 1.21732 0.97394 0.93184 1.03706 1.21383 0.89394 0.99839 0.99598 0.88763 1.21884 1.02568 0.99729 0.96431 1.21121 0.95886 0.82681 0.96841 0.86964 1.43970 1.21110 1.07603 1.60754 1.19832 0.87326 0.91729 0.88767 1.22262 0.97993 0.98535 1.15131 1.67477 1.11605 1.21913 1.11507 1.23069 1.04236 0.89352 1.13598 1.19556 0.88045 0.95284 0.88429 1.20059 1.10218 0.91166 1.25929 0.87894 1.27143 0.94374 1.05515 0.93141 1.70205 1.11837 1.35370 1.19035 0.85070 0.78954 0.74639 0.79919 1.18351 1.19341 1.17590 1.69020 1.16170 1.15943 1.25489 1.21651 0.77775 0.83644 0.88339 1.43783 1.67859 1.05838 1.22509 1.90738 1.47765 1.67768 1.40007 0.92443 0.92778 0.91215 0.90808 0.89409 0.94435 0.93753 0.89725 0.76697 0.83791 0.83882 0.90737 0.75068 0.76315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.69 71.98 0.70 -1.08 16 2 C -0.12 -1.68 4.31 30.59 0.13 -1.55 16 3 C -0.08 -1.78 2.34 -10.79 -0.03 -1.80 16 4 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 5 C -0.15 -3.60 8.53 71.99 0.61 -2.98 16 6 C 0.14 4.25 1.90 44.24 0.08 4.34 16 7 H 0.11 2.95 6.46 -2.39 -0.02 2.94 16 8 N -0.70 -28.87 4.74 -327.66 -1.55 -30.42 16 9 C 0.37 18.87 7.64 133.38 1.02 19.89 16 10 C -0.18 -8.69 10.33 85.07 0.88 -7.81 16 11 N -0.41 -21.79 10.47 -192.23 -2.01 -23.81 16 12 C -0.13 -7.29 10.97 85.28 0.94 -6.35 16 13 C 0.21 12.47 6.54 40.15 0.26 12.74 16 14 C -0.44 -24.12 9.15 23.46 0.21 -23.90 16 15 H 0.10 5.11 7.85 -2.91 -0.02 5.08 16 16 C 0.02 1.11 5.49 85.30 0.47 1.57 16 17 N -0.74 -40.29 11.50 21.84 0.25 -40.04 16 18 Si 1.00 37.75 29.56 68.60 2.03 39.78 16 19 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 20 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 22 N -0.54 -31.34 8.09 -186.00 -1.50 -32.85 16 23 C 0.50 15.56 5.48 87.65 0.48 16.04 16 24 N -0.83 -15.96 7.53 -173.54 -1.31 -17.27 16 25 O -0.58 -25.17 17.09 -3.03 -0.05 -25.23 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.69 6.61 -2.39 -0.02 0.67 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.99 6.51 -2.39 -0.02 0.97 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.04 1.09 6.59 -2.39 -0.02 1.07 16 32 H 0.04 1.19 6.95 -2.39 -0.02 1.17 16 33 H 0.08 1.60 6.61 -2.39 -0.02 1.58 16 34 H 0.40 16.98 7.10 -92.71 -0.66 16.32 16 35 H 0.14 5.95 6.16 -2.91 -0.02 5.93 16 36 H 0.14 7.09 8.06 -2.91 -0.02 7.06 16 37 H 0.28 13.79 8.29 -92.70 -0.77 13.03 16 38 H 0.42 4.84 8.07 -92.71 -0.75 4.09 16 39 H 0.41 6.91 8.93 -92.71 -0.83 6.08 16 Total: -1.00 -77.39 319.44 0.49 -76.89 By element: Atomic # 1 Polarization: 44.97 SS G_CDS: -1.12 Total: 43.85 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.76 Total: 9.09 kcal Atomic # 7 Polarization: -138.26 SS G_CDS: -6.12 Total: -144.39 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.23 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -77.39 0.49 -76.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158276318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.573 kcal (2) G-P(sol) polarization free energy of solvation -77.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds