Wall clock time and date at job start Tue Mar 31 2020 00:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47312 * 2 1 4 4 C 1.52994 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47187 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47047 * 55.00198 * 5 4 3 7 7 N 1.46502 * 109.47108 * 294.99973 * 5 4 3 8 8 C 1.38825 * 120.00030 * 154.99767 * 7 5 4 9 9 C 1.39968 * 119.97147 * 359.72454 * 8 7 5 10 10 N 1.32123 * 120.32026 * 179.74794 * 9 8 7 11 11 C 1.31934 * 120.27224 * 0.52933 * 10 9 8 12 12 C 1.40684 * 119.92991 * 359.73343 * 11 10 9 13 13 C 1.41276 * 120.15220 * 179.97438 * 12 11 10 14 14 H 1.07990 * 120.00219 * 353.74964 * 13 12 11 15 15 C 1.40063 * 119.99558 * 173.74688 * 13 12 11 16 16 N 1.30730 * 119.99940 * 6.27566 * 15 13 12 17 17 Si 1.86799 * 119.99747 * 186.27050 * 15 13 12 18 18 H 1.48507 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47113 * 120.00288 * 17 15 13 20 20 H 1.48498 * 109.47335 * 240.00326 * 17 15 13 21 21 N 1.32234 * 119.97319 * 180.02562 * 8 7 5 22 22 C 1.50694 * 109.47328 * 175.00193 * 5 4 3 23 23 N 1.34779 * 120.00081 * 299.99830 * 22 5 4 24 24 O 1.21281 * 120.00271 * 119.99853 * 22 5 4 25 25 H 1.08998 * 109.47230 * 59.99877 * 1 2 3 26 26 H 1.09003 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47313 * 299.99380 * 1 2 3 28 28 H 1.09005 * 109.47186 * 240.00330 * 2 1 3 29 29 H 1.08998 * 109.47230 * 120.00123 * 2 1 3 30 30 H 1.09005 * 109.46725 * 60.00048 * 3 2 1 31 31 H 1.08999 * 109.47519 * 300.00514 * 3 2 1 32 32 H 1.08997 * 109.47313 * 60.00620 * 4 3 2 33 33 H 1.08998 * 109.47230 * 300.00123 * 4 3 2 34 34 H 0.97004 * 120.00090 * 335.00065 * 7 5 4 35 35 H 1.08004 * 119.83546 * 0.02562 * 9 8 7 36 36 H 1.07996 * 120.03824 * 179.74603 * 11 10 9 37 37 H 0.97003 * 119.99463 * 179.97438 * 16 15 13 38 38 H 0.97003 * 120.00292 * 179.97438 * 23 22 5 39 39 H 0.97001 * 119.99477 * 359.72861 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4235 0.8424 7 7 3.6919 3.5407 -1.2513 8 6 3.5612 4.9220 -1.2996 9 6 3.7947 5.6870 -0.1510 10 7 3.6772 7.0024 -0.1905 11 6 3.3283 7.6057 -1.3108 12 6 3.0856 6.8470 -2.4704 13 6 2.7113 7.4881 -3.6724 14 1 2.5125 8.5495 -3.6791 15 6 2.5980 6.7469 -4.8554 16 7 2.7178 5.4454 -4.8254 17 14 2.2756 7.6181 -6.4761 18 1 2.1820 9.0815 -6.2414 19 1 3.3889 7.3385 -7.4184 20 1 1.0003 7.1269 -7.0570 21 7 3.2104 5.5132 -2.4292 22 6 5.5818 2.8868 0.1231 23 7 6.1702 2.3330 1.2019 24 8 6.2612 3.3865 -0.7484 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9336 0.9285 0.8891 34 1 3.5262 3.0098 -2.0460 35 1 4.0767 5.2001 0.7708 36 1 3.2294 8.6808 -1.3377 37 1 2.6390 4.9321 -5.6447 38 1 7.1370 2.3338 1.2810 39 1 5.6267 1.9368 1.9008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162282252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:10 Heat of formation + Delta-G solvation = -10.080475 kcal Electronic energy + Delta-G solvation = -21660.243426 eV Core-core repulsion = 18409.054802 eV Total energy + Delta-G solvation = -3251.188624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.74608 -38.54600 -36.47346 -34.52267 -33.79415 -33.52484 -31.82403 -30.67643 -28.59056 -26.39762 -25.79985 -22.97286 -22.19937 -21.46169 -20.98069 -19.92044 -17.72019 -17.11041 -16.75434 -16.45114 -15.63110 -15.22824 -14.94119 -14.73165 -14.34166 -14.00236 -13.86670 -13.47239 -13.24319 -12.91916 -12.81486 -12.54463 -11.72506 -11.41226 -11.40721 -11.33434 -11.21354 -11.10898 -10.81702 -10.66056 -10.54764 -10.28484 -10.22060 -9.70087 -9.51175 -9.37828 -9.31724 -8.31000 -7.33007 -6.69612 -6.38865 -4.59430 2.74329 2.89978 3.08381 3.12827 3.14318 3.33621 3.63870 3.92330 4.04933 4.63846 4.77474 4.87537 4.91432 5.18279 5.18840 5.23498 5.40774 5.66133 5.69381 5.78788 5.84382 5.92291 5.99418 6.10481 6.12630 6.24434 6.37368 6.37632 6.57304 6.78115 6.92215 7.09393 7.17760 7.43719 7.64402 7.98226 8.08964 8.45554 8.52037 8.61980 8.90413 9.47360 10.06637 10.25032 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.005272 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.570814 B = 5310.157141 C = 6246.226421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.118 4.118 5 C 0.148 3.852 6 H 0.104 0.896 7 N -0.703 5.703 8 C 0.383 3.617 9 C -0.167 4.167 10 N -0.408 5.408 11 C -0.108 4.108 12 C 0.246 3.754 13 C -0.417 4.417 14 H 0.090 0.910 15 C 0.068 3.932 16 N -0.708 5.708 17 Si 0.910 3.090 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.273 1.273 21 N -0.505 5.505 22 C 0.492 3.508 23 N -0.863 5.863 24 O -0.518 6.518 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.400 0.600 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.273 0.727 38 H 0.396 0.604 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -12.310 8.353 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.157 4.157 5 C 0.036 3.964 6 H 0.122 0.878 7 N -0.339 5.339 8 C 0.140 3.860 9 C -0.328 4.328 10 N -0.119 5.119 11 C -0.278 4.278 12 C 0.118 3.882 13 C -0.449 4.449 14 H 0.108 0.892 15 C -0.159 4.159 16 N -0.329 5.329 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.198 1.198 21 N -0.231 5.231 22 C 0.274 3.726 23 N -0.428 5.428 24 O -0.391 6.391 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.236 0.764 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.935 -12.137 7.726 14.418 hybrid contribution 0.166 -0.121 -0.591 0.625 sum -0.769 -12.258 7.136 14.204 Atomic orbital electron populations 1.21770 0.95928 1.01256 1.02131 1.21516 0.95934 0.96875 1.01685 1.21621 0.93925 0.96698 1.03510 1.21808 0.97006 0.93804 1.03065 1.20677 0.89957 0.94887 0.90851 0.87829 1.43695 1.76000 1.03586 1.10658 1.19374 0.90072 0.84697 0.91888 1.21784 1.23133 0.90658 0.97247 1.67469 1.06467 1.09793 1.28192 1.22887 1.14866 0.99164 0.90855 1.19091 0.88606 0.87448 0.93008 1.19644 1.38054 0.96004 0.91245 0.89164 1.26128 0.93738 0.94795 1.01190 1.70123 1.27870 1.06276 1.28610 0.86232 0.78607 0.80838 0.80951 1.18189 1.19794 1.19835 1.68999 1.22605 1.10140 1.21314 1.21807 0.92315 0.77024 0.81440 1.43980 1.11076 1.63644 1.24140 1.90789 1.65374 1.43001 1.39894 0.92499 0.93073 0.92779 0.92094 0.92312 0.91666 0.90666 0.90898 0.90559 0.76399 0.86994 0.85303 0.91595 0.77415 0.77548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.15 0.37 -1.03 16 2 C -0.12 -1.11 5.93 -26.74 -0.16 -1.27 16 3 C -0.12 -1.30 5.10 -26.74 -0.14 -1.43 16 4 C -0.12 -1.25 4.70 -26.73 -0.13 -1.38 16 5 C 0.15 2.20 2.08 -69.08 -0.14 2.05 16 6 H 0.10 1.48 6.45 -51.93 -0.33 1.15 16 7 N -0.70 -14.03 4.21 -54.91 -0.23 -14.26 16 8 C 0.38 9.60 7.55 -155.02 -1.17 8.43 16 9 C -0.17 -4.16 10.34 -16.78 -0.17 -4.33 16 10 N -0.41 -10.82 10.47 -12.11 -0.13 -10.95 16 11 C -0.11 -2.90 10.97 -16.58 -0.18 -3.08 16 12 C 0.25 6.99 6.54 -84.83 -0.55 6.43 16 13 C -0.42 -11.20 9.15 -37.74 -0.35 -11.55 16 14 H 0.09 2.24 7.85 -52.49 -0.41 1.83 16 15 C 0.07 1.72 5.49 -17.34 -0.10 1.63 16 16 N -0.71 -18.74 11.51 55.55 0.64 -18.11 16 17 Si 0.91 18.54 29.56 -169.99 -5.03 13.51 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 21 N -0.50 -14.21 8.10 -10.14 -0.08 -14.29 16 22 C 0.49 7.84 7.34 -10.99 -0.08 7.76 16 23 N -0.86 -8.88 8.73 31.22 0.27 -8.61 16 24 O -0.52 -11.39 17.19 5.56 0.10 -11.29 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.57 7.43 -51.93 -0.39 0.19 16 34 H 0.40 8.03 8.73 -40.82 -0.36 7.67 16 35 H 0.11 2.47 6.16 -52.48 -0.32 2.15 16 36 H 0.13 3.15 8.06 -52.49 -0.42 2.73 16 37 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 38 H 0.40 3.74 8.93 -40.82 -0.36 3.38 16 39 H 0.40 2.61 8.20 -40.82 -0.33 2.27 16 LS Contribution 331.04 15.07 4.99 4.99 Total: -1.00 -34.82 331.04 -7.70 -42.52 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.43 Total: 14.25 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.80 Total: 2.24 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.47 Total: -66.21 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.10 Total: -11.29 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.82 -7.70 -42.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162282252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.439 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds