Wall clock time and date at job start Tue Mar 31 2020 00:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47312 * 2 1 4 4 C 1.52994 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47187 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47047 * 55.00198 * 5 4 3 7 7 N 1.46502 * 109.47108 * 294.99973 * 5 4 3 8 8 C 1.38825 * 120.00030 * 154.99767 * 7 5 4 9 9 C 1.39968 * 119.97147 * 359.72454 * 8 7 5 10 10 N 1.32123 * 120.32026 * 179.74794 * 9 8 7 11 11 C 1.31934 * 120.27224 * 0.52933 * 10 9 8 12 12 C 1.40684 * 119.92991 * 359.73343 * 11 10 9 13 13 C 1.41276 * 120.15220 * 179.97438 * 12 11 10 14 14 H 1.07990 * 120.00219 * 353.74964 * 13 12 11 15 15 C 1.40063 * 119.99558 * 173.74688 * 13 12 11 16 16 N 1.30730 * 119.99940 * 6.27566 * 15 13 12 17 17 Si 1.86799 * 119.99747 * 186.27050 * 15 13 12 18 18 H 1.48507 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47113 * 120.00288 * 17 15 13 20 20 H 1.48498 * 109.47335 * 240.00326 * 17 15 13 21 21 N 1.32234 * 119.97319 * 180.02562 * 8 7 5 22 22 C 1.50694 * 109.47328 * 175.00193 * 5 4 3 23 23 N 1.34779 * 120.00081 * 299.99830 * 22 5 4 24 24 O 1.21281 * 120.00271 * 119.99853 * 22 5 4 25 25 H 1.08998 * 109.47230 * 59.99877 * 1 2 3 26 26 H 1.09003 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47313 * 299.99380 * 1 2 3 28 28 H 1.09005 * 109.47186 * 240.00330 * 2 1 3 29 29 H 1.08998 * 109.47230 * 120.00123 * 2 1 3 30 30 H 1.09005 * 109.46725 * 60.00048 * 3 2 1 31 31 H 1.08999 * 109.47519 * 300.00514 * 3 2 1 32 32 H 1.08997 * 109.47313 * 60.00620 * 4 3 2 33 33 H 1.08998 * 109.47230 * 300.00123 * 4 3 2 34 34 H 0.97004 * 120.00090 * 335.00065 * 7 5 4 35 35 H 1.08004 * 119.83546 * 0.02562 * 9 8 7 36 36 H 1.07996 * 120.03824 * 179.74603 * 11 10 9 37 37 H 0.97003 * 119.99463 * 179.97438 * 16 15 13 38 38 H 0.97003 * 120.00292 * 179.97438 * 23 22 5 39 39 H 0.97001 * 119.99477 * 359.72861 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4235 0.8424 7 7 3.6919 3.5407 -1.2513 8 6 3.5612 4.9220 -1.2996 9 6 3.7947 5.6870 -0.1510 10 7 3.6772 7.0024 -0.1905 11 6 3.3283 7.6057 -1.3108 12 6 3.0856 6.8470 -2.4704 13 6 2.7113 7.4881 -3.6724 14 1 2.5125 8.5495 -3.6791 15 6 2.5980 6.7469 -4.8554 16 7 2.7178 5.4454 -4.8254 17 14 2.2756 7.6181 -6.4761 18 1 2.1820 9.0815 -6.2414 19 1 3.3889 7.3385 -7.4184 20 1 1.0003 7.1269 -7.0570 21 7 3.2104 5.5132 -2.4292 22 6 5.5818 2.8868 0.1231 23 7 6.1702 2.3330 1.2019 24 8 6.2612 3.3865 -0.7484 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9336 0.9285 0.8891 34 1 3.5262 3.0098 -2.0460 35 1 4.0767 5.2001 0.7708 36 1 3.2294 8.6808 -1.3377 37 1 2.6390 4.9321 -5.6447 38 1 7.1370 2.3338 1.2810 39 1 5.6267 1.9368 1.9008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162282252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:09 Heat of formation + Delta-G solvation = -36.906501 kcal Electronic energy + Delta-G solvation = -21661.406689 eV Core-core repulsion = 18409.054802 eV Total energy + Delta-G solvation = -3252.351887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23051 -40.31182 -37.65981 -35.99066 -35.57858 -34.69331 -33.58715 -32.17031 -30.17396 -27.78030 -27.58632 -24.42460 -23.65525 -23.27267 -21.83293 -21.24825 -19.43743 -18.49948 -18.34500 -17.80814 -17.16360 -16.79097 -16.64231 -16.13498 -15.67436 -15.41373 -15.25391 -14.81673 -14.75702 -14.29638 -13.98849 -13.64275 -13.26964 -13.21129 -12.98768 -12.59630 -12.53016 -12.10041 -12.07852 -11.98908 -11.94999 -11.72856 -11.54818 -11.37613 -11.36104 -10.87192 -10.61842 -10.21368 -9.32424 -8.51341 -8.32492 -6.63437 0.84028 1.26236 1.41536 1.54842 1.58473 1.65103 2.21211 2.31414 2.70547 2.86242 3.67128 3.85811 3.97257 4.01891 4.12161 4.24232 4.31809 4.41593 4.42858 4.53401 4.66059 4.81155 4.85792 4.89549 5.03337 5.07324 5.15357 5.16404 5.21832 5.33536 5.45230 5.55323 5.69088 5.93826 6.09113 6.17622 6.49527 6.63943 6.69780 6.96905 7.41502 7.46091 8.08812 8.36054 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.005272 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.570814 B = 5310.157141 C = 6246.226421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.118 4.118 4 C -0.106 4.106 5 C 0.143 3.857 6 H 0.114 0.886 7 N -0.696 5.696 8 C 0.377 3.623 9 C -0.174 4.174 10 N -0.417 5.417 11 C -0.136 4.136 12 C 0.215 3.785 13 C -0.442 4.442 14 H 0.101 0.899 15 C 0.022 3.978 16 N -0.742 5.742 17 Si 0.995 3.005 18 H -0.249 1.249 19 H -0.270 1.270 20 H -0.262 1.262 21 N -0.539 5.539 22 C 0.492 3.508 23 N -0.831 5.831 24 O -0.587 6.587 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.397 0.603 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.281 0.719 38 H 0.405 0.595 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 -13.829 9.194 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.155 4.155 4 C -0.144 4.144 5 C 0.032 3.968 6 H 0.132 0.868 7 N -0.330 5.330 8 C 0.132 3.868 9 C -0.336 4.336 10 N -0.128 5.128 11 C -0.305 4.305 12 C 0.088 3.912 13 C -0.474 4.474 14 H 0.119 0.881 15 C -0.202 4.202 16 N -0.364 5.364 17 Si 0.814 3.186 18 H -0.172 1.172 19 H -0.195 1.195 20 H -0.187 1.187 21 N -0.266 5.266 22 C 0.275 3.725 23 N -0.396 5.396 24 O -0.466 6.466 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.232 0.768 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.237 0.763 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.035 -13.714 8.674 16.260 hybrid contribution 0.220 0.197 -0.714 0.773 sum -0.816 -13.517 7.959 15.707 Atomic orbital electron populations 1.21791 0.96223 1.01901 1.01399 1.21487 0.95664 0.95539 1.02809 1.21578 0.94056 0.97819 1.02078 1.21829 0.96667 0.90900 1.05044 1.21088 0.89722 0.97175 0.88784 0.86806 1.43867 1.74910 1.01760 1.12456 1.19731 0.89030 0.86739 0.91330 1.22213 1.22702 0.90420 0.98312 1.67463 1.06559 1.10643 1.28146 1.23047 1.16630 0.99851 0.90969 1.19555 0.89415 0.88155 0.94123 1.20078 1.38567 0.96850 0.91917 0.88071 1.27133 0.92813 0.95428 1.04792 1.70212 1.27924 1.07994 1.30223 0.84976 0.78653 0.79733 0.75249 1.17241 1.19451 1.18703 1.69011 1.24297 1.10425 1.22875 1.21874 0.92383 0.76489 0.81721 1.43654 1.11904 1.61318 1.22771 1.90776 1.66620 1.46497 1.42687 0.94269 0.91745 0.92532 0.92200 0.89860 0.91195 0.94104 0.91208 0.86101 0.76811 0.84269 0.84054 0.90783 0.76340 0.74836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.12 -1.84 5.93 30.59 0.18 -1.66 16 3 C -0.12 -2.35 5.10 30.59 0.16 -2.19 16 4 C -0.11 -1.97 4.70 30.59 0.14 -1.82 16 5 C 0.14 4.01 2.08 44.24 0.09 4.11 16 6 H 0.11 3.00 6.45 -2.39 -0.02 2.99 16 7 N -0.70 -28.15 4.21 -327.65 -1.38 -29.53 16 8 C 0.38 19.38 7.55 133.38 1.01 20.38 16 9 C -0.17 -8.76 10.34 85.07 0.88 -7.88 16 10 N -0.42 -22.51 10.47 -192.22 -2.01 -24.52 16 11 C -0.14 -7.58 10.97 85.28 0.94 -6.64 16 12 C 0.22 12.65 6.54 40.15 0.26 12.92 16 13 C -0.44 -24.37 9.15 23.46 0.21 -24.15 16 14 H 0.10 5.12 7.85 -2.92 -0.02 5.09 16 15 C 0.02 1.11 5.49 85.30 0.47 1.58 16 16 N -0.74 -40.22 11.51 21.84 0.25 -39.97 16 17 Si 0.99 38.03 29.56 68.60 2.03 40.06 16 18 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 19 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 21 N -0.54 -31.46 8.10 -185.99 -1.51 -32.97 16 22 C 0.49 14.96 7.34 87.65 0.64 15.60 16 23 N -0.83 -14.50 8.73 -173.53 -1.52 -16.02 16 24 O -0.59 -25.97 17.19 -3.03 -0.05 -26.02 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.04 1.10 7.75 -2.39 -0.02 1.08 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 1.20 7.43 -2.39 -0.02 1.18 16 34 H 0.40 16.44 8.73 -92.71 -0.81 15.63 16 35 H 0.14 6.02 6.16 -2.91 -0.02 6.01 16 36 H 0.14 7.17 8.06 -2.91 -0.02 7.14 16 37 H 0.28 13.67 8.29 -92.71 -0.77 12.90 16 38 H 0.41 6.50 8.93 -92.71 -0.83 5.67 16 39 H 0.42 3.62 8.20 -92.71 -0.76 2.86 16 Total: -1.00 -79.80 331.04 0.22 -79.58 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -1.30 Total: 41.06 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 5.70 Total: 8.33 kcal Atomic # 7 Polarization: -136.85 SS G_CDS: -6.16 Total: -143.01 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -79.80 0.22 -79.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162282252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.675 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds