Wall clock time and date at job start Tue Mar 31 2020 00:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46891 * 2 1 4 4 C 1.52999 * 109.47148 * 239.99837 * 2 1 3 5 5 C 1.50705 * 109.47146 * 119.99664 * 2 1 3 6 6 O 1.21292 * 120.00050 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99551 * 179.72094 * 5 2 1 8 8 C 1.40179 * 119.99642 * 175.98339 * 7 5 2 9 9 C 1.39093 * 120.43754 * 34.28147 * 8 7 5 10 10 C 1.38484 * 118.52651 * 179.97438 * 9 8 7 11 11 C 1.39085 * 119.34011 * 0.02562 * 10 9 8 12 12 N 1.39167 * 119.58045 * 179.97438 * 11 10 9 13 13 N 1.32367 * 120.83397 * 359.97438 * 11 10 9 14 14 C 1.32569 * 121.59647 * 359.73605 * 13 11 10 15 15 N 1.38817 * 119.71095 * 180.26302 * 14 13 11 16 16 C 1.36883 * 119.99814 * 0.26516 * 15 14 13 17 17 H 1.07995 * 119.99829 * 359.97438 * 16 15 14 18 18 C 1.38767 * 119.99735 * 180.02562 * 16 15 14 19 19 N 1.31597 * 120.00139 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47714 * 89.99435 * 20 18 16 22 22 H 1.48501 * 109.47184 * 209.99574 * 20 18 16 23 23 H 1.48508 * 109.46935 * 329.99371 * 20 18 16 24 24 H 1.09005 * 109.46985 * 300.00069 * 1 2 3 25 25 H 1.08998 * 109.47629 * 60.00219 * 1 2 3 26 26 H 1.09004 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46451 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46538 * 299.99805 * 3 2 1 29 29 H 1.08997 * 109.46753 * 60.00294 * 3 2 1 30 30 H 1.08996 * 109.47156 * 299.99873 * 4 2 1 31 31 H 1.09003 * 109.46905 * 59.99987 * 4 2 1 32 32 H 1.08999 * 109.47163 * 179.97438 * 4 2 1 33 33 H 0.96997 * 120.00275 * 355.98793 * 7 5 2 34 34 H 1.07995 * 120.73718 * 359.97438 * 9 8 7 35 35 H 1.08002 * 120.32762 * 179.97438 * 10 9 8 36 36 H 0.96991 * 120.00149 * 359.97438 * 12 11 10 37 37 H 0.96998 * 119.99405 * 179.97438 * 12 11 10 38 38 H 0.96999 * 120.00133 * 180.27230 * 15 14 13 39 39 H 0.97001 * 120.00104 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0287 7 7 3.3574 -0.8384 1.4409 8 6 3.8256 -1.4239 2.6253 9 6 3.1154 -2.4558 3.2299 10 6 3.6144 -3.0059 4.3987 11 6 4.8018 -2.5143 4.9306 12 7 5.3075 -3.0631 6.1053 13 7 5.4568 -1.5311 4.3337 14 6 5.0142 -0.9828 3.2108 15 7 5.7354 0.0427 2.6150 16 6 6.9011 0.4799 3.1840 17 1 7.2594 0.0272 4.0967 18 6 7.6218 1.5054 2.5887 19 7 7.1849 2.0573 1.4768 20 14 9.2129 2.1016 3.3647 21 1 10.3524 1.3199 2.8209 22 1 9.4066 3.5407 3.0536 23 1 9.1447 1.9182 4.8369 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 3.9871 -0.5253 0.7728 34 1 2.1953 -2.8199 2.7974 35 1 3.0864 -3.8082 4.8927 36 1 4.8323 -3.7835 6.5479 37 1 6.1353 -2.7251 6.4813 38 1 5.4134 0.4496 1.7955 39 1 7.6889 2.7740 1.0604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:29 Heat of formation + Delta-G solvation = -2.882314 kcal Electronic energy + Delta-G solvation = -22003.867476 eV Core-core repulsion = 18752.990988 eV Total energy + Delta-G solvation = -3250.876488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.22414 -38.76931 -35.78581 -35.46091 -34.35270 -32.74739 -31.65393 -30.01716 -27.45363 -27.26621 -26.77783 -24.69082 -23.27300 -21.71200 -21.13231 -19.08269 -18.03842 -17.14014 -16.76570 -16.36631 -15.91911 -14.89323 -14.84648 -14.37015 -14.26905 -14.02329 -13.78658 -13.55569 -13.19499 -13.04605 -12.37217 -12.21059 -12.11775 -11.85240 -11.69356 -11.62705 -11.54075 -11.44636 -10.91993 -10.85854 -10.81346 -10.52879 -10.33871 -10.07569 -9.30138 -9.03233 -8.68472 -8.18501 -7.78630 -6.56427 -6.39584 -3.74773 2.38442 2.54971 3.17899 3.19218 3.19707 3.24611 3.66159 4.04626 4.26889 4.76479 4.80963 4.87860 4.97286 5.05212 5.30564 5.38531 5.61233 5.65918 5.79769 5.84825 5.88582 5.92425 6.00313 6.14285 6.15310 6.31160 6.31373 6.37363 6.52712 6.84418 6.86352 7.28599 7.43947 7.50141 7.78434 8.01383 8.10814 8.23255 8.72142 8.73889 9.12371 9.28461 9.75006 10.60595 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.006745 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.664809 B = 4150.066419 C = 6058.391083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.141 4.141 5 C 0.515 3.485 6 O -0.539 6.539 7 N -0.644 5.644 8 C -0.076 4.076 9 C 0.011 3.989 10 C -0.345 4.345 11 C 0.444 3.556 12 N -0.863 5.863 13 N -0.590 5.590 14 C 0.401 3.599 15 N -0.536 5.536 16 C -0.278 4.278 17 H 0.112 0.888 18 C 0.014 3.986 19 N -0.900 5.900 20 Si 0.935 3.065 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.399 0.601 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.399 0.601 37 H 0.395 0.605 38 H 0.402 0.598 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.178 -4.269 -3.118 8.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.089 4.089 3 C -0.200 4.200 4 C -0.199 4.199 5 C 0.302 3.698 6 O -0.416 6.416 7 N -0.289 5.289 8 C -0.178 4.178 9 C -0.016 4.016 10 C -0.375 4.375 11 C 0.203 3.797 12 N -0.407 5.407 13 N -0.322 5.322 14 C 0.154 3.846 15 N -0.144 5.144 16 C -0.408 4.408 17 H 0.130 0.870 18 C -0.188 4.188 19 N -0.539 5.539 20 Si 0.762 3.238 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.193 1.193 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.234 0.766 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.227 0.773 37 H 0.223 0.777 38 H 0.238 0.762 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.707 -3.876 -2.417 8.115 hybrid contribution 0.416 0.318 -0.371 0.642 sum -6.291 -3.558 -2.788 7.746 Atomic orbital electron populations 1.21629 0.92239 1.02543 1.01757 1.20797 0.97780 0.96611 0.93687 1.21880 1.01990 0.93523 1.02571 1.21878 1.01502 1.00411 0.96071 1.20511 0.82124 0.79841 0.87369 1.90619 1.55275 1.48761 1.46989 1.43028 1.06859 1.59857 1.19129 1.17479 1.00625 1.04661 0.94986 1.20764 0.97103 0.90328 0.93357 1.20432 1.01774 1.11419 1.03868 1.17913 0.88125 0.88025 0.85674 1.42113 1.29682 1.42422 1.26504 1.66518 1.36278 1.16455 1.12905 1.17584 0.88363 0.89547 0.89100 1.40804 1.20864 1.28899 1.23840 1.19905 0.97432 1.14944 1.08557 0.86982 1.25328 1.00209 0.96921 0.96344 1.69654 1.39978 1.25933 1.18310 0.85762 0.80873 0.77710 0.79443 1.20388 1.20931 1.19342 0.92006 0.92347 0.92105 0.91519 0.91610 0.92046 0.92145 0.91509 0.91965 0.76567 0.85346 0.87423 0.77280 0.77687 0.76196 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 7.76 37.16 0.29 -1.24 16 2 C -0.09 -1.14 0.87 -155.65 -0.14 -1.27 16 3 C -0.14 -1.82 8.38 37.16 0.31 -1.51 16 4 C -0.14 -1.57 8.37 37.16 0.31 -1.26 16 5 C 0.51 9.03 6.34 -10.98 -0.07 8.96 16 6 O -0.54 -11.01 13.43 5.55 0.07 -10.94 16 7 N -0.64 -11.84 4.82 -9.56 -0.05 -11.89 16 8 C -0.08 -1.63 6.36 -83.20 -0.53 -2.16 16 9 C 0.01 0.23 8.80 -39.17 -0.34 -0.11 16 10 C -0.35 -6.74 9.92 -39.18 -0.39 -7.12 16 11 C 0.44 8.99 7.74 -154.91 -1.20 7.79 16 12 N -0.86 -13.28 9.08 31.15 0.28 -13.00 16 13 N -0.59 -13.80 9.11 -11.44 -0.10 -13.91 16 14 C 0.40 9.49 7.45 -154.87 -1.15 8.34 16 15 N -0.54 -13.19 5.39 -11.06 -0.06 -13.25 16 16 C -0.28 -7.28 9.70 -15.10 -0.15 -7.43 16 17 H 0.11 3.01 7.07 -52.49 -0.37 2.63 16 18 C 0.01 0.36 5.50 -17.46 -0.10 0.26 16 19 N -0.90 -23.33 13.05 55.49 0.72 -22.61 16 20 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 7.46 -51.93 -0.39 0.30 16 33 H 0.40 6.78 6.53 -40.82 -0.27 6.51 16 34 H 0.13 2.60 6.27 -52.49 -0.33 2.27 16 35 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.40 4.79 8.82 -40.82 -0.36 4.43 16 37 H 0.40 5.78 8.95 -40.82 -0.37 5.42 16 38 H 0.40 9.58 6.45 -40.82 -0.26 9.32 16 39 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -30.00 325.46 -7.65 -37.66 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -5.25 Total: 24.60 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -3.15 Total: 3.25 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: 0.80 Total: -74.65 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.00 -7.65 -37.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.776 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds