Wall clock time and date at job start Tue Mar 31 2020 00:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46891 * 2 1 4 4 C 1.52999 * 109.47148 * 239.99837 * 2 1 3 5 5 C 1.50705 * 109.47146 * 119.99664 * 2 1 3 6 6 O 1.21292 * 120.00050 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99551 * 179.72094 * 5 2 1 8 8 C 1.40179 * 119.99642 * 175.98339 * 7 5 2 9 9 C 1.39093 * 120.43754 * 34.28147 * 8 7 5 10 10 C 1.38484 * 118.52651 * 179.97438 * 9 8 7 11 11 C 1.39085 * 119.34011 * 0.02562 * 10 9 8 12 12 N 1.39167 * 119.58045 * 179.97438 * 11 10 9 13 13 N 1.32367 * 120.83397 * 359.97438 * 11 10 9 14 14 C 1.32569 * 121.59647 * 359.73605 * 13 11 10 15 15 N 1.38817 * 119.71095 * 180.26302 * 14 13 11 16 16 C 1.36883 * 119.99814 * 0.26516 * 15 14 13 17 17 H 1.07995 * 119.99829 * 359.97438 * 16 15 14 18 18 C 1.38767 * 119.99735 * 180.02562 * 16 15 14 19 19 N 1.31597 * 120.00139 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47714 * 89.99435 * 20 18 16 22 22 H 1.48501 * 109.47184 * 209.99574 * 20 18 16 23 23 H 1.48508 * 109.46935 * 329.99371 * 20 18 16 24 24 H 1.09005 * 109.46985 * 300.00069 * 1 2 3 25 25 H 1.08998 * 109.47629 * 60.00219 * 1 2 3 26 26 H 1.09004 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46451 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46538 * 299.99805 * 3 2 1 29 29 H 1.08997 * 109.46753 * 60.00294 * 3 2 1 30 30 H 1.08996 * 109.47156 * 299.99873 * 4 2 1 31 31 H 1.09003 * 109.46905 * 59.99987 * 4 2 1 32 32 H 1.08999 * 109.47163 * 179.97438 * 4 2 1 33 33 H 0.96997 * 120.00275 * 355.98793 * 7 5 2 34 34 H 1.07995 * 120.73718 * 359.97438 * 9 8 7 35 35 H 1.08002 * 120.32762 * 179.97438 * 10 9 8 36 36 H 0.96991 * 120.00149 * 359.97438 * 12 11 10 37 37 H 0.96998 * 119.99405 * 179.97438 * 12 11 10 38 38 H 0.96999 * 120.00133 * 180.27230 * 15 14 13 39 39 H 0.97001 * 120.00104 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0287 7 7 3.3574 -0.8384 1.4409 8 6 3.8256 -1.4239 2.6253 9 6 3.1154 -2.4558 3.2299 10 6 3.6144 -3.0059 4.3987 11 6 4.8018 -2.5143 4.9306 12 7 5.3075 -3.0631 6.1053 13 7 5.4568 -1.5311 4.3337 14 6 5.0142 -0.9828 3.2108 15 7 5.7354 0.0427 2.6150 16 6 6.9011 0.4799 3.1840 17 1 7.2594 0.0272 4.0967 18 6 7.6218 1.5054 2.5887 19 7 7.1849 2.0573 1.4768 20 14 9.2129 2.1016 3.3647 21 1 10.3524 1.3199 2.8209 22 1 9.4066 3.5407 3.0536 23 1 9.1447 1.9182 4.8369 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 3.9871 -0.5253 0.7728 34 1 2.1953 -2.8199 2.7974 35 1 3.0864 -3.8082 4.8927 36 1 4.8323 -3.7835 6.5479 37 1 6.1353 -2.7251 6.4813 38 1 5.4134 0.4496 1.7955 39 1 7.6889 2.7740 1.0604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:28 Heat of formation + Delta-G solvation = -22.443737 kcal Electronic energy + Delta-G solvation = -22004.715723 eV Core-core repulsion = 18752.990988 eV Total energy + Delta-G solvation = -3251.724735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71441 -40.32654 -37.45275 -36.67297 -35.95257 -34.32333 -33.36819 -31.72508 -28.92585 -28.22436 -27.92635 -26.49962 -24.68435 -23.40374 -22.65398 -20.53247 -19.71633 -18.77874 -18.23623 -17.85042 -17.31158 -16.58974 -16.19807 -15.96215 -15.68314 -15.62951 -15.16613 -14.88216 -14.75100 -14.40381 -13.88236 -13.47893 -13.34543 -13.20020 -13.17712 -13.04897 -12.80900 -12.62114 -12.51127 -12.37714 -12.08312 -11.90536 -11.86937 -11.71580 -10.83774 -10.68855 -10.28887 -9.82951 -9.52020 -8.43851 -8.01442 -5.68789 0.75294 0.85741 1.43899 1.49720 1.55954 1.75344 2.26463 2.30781 2.76252 2.99158 3.37271 3.51454 3.62537 3.85523 3.94999 4.17342 4.29715 4.53427 4.69718 4.72757 4.74962 4.83821 4.85107 4.94443 4.96757 5.02986 5.21790 5.24245 5.31656 5.33375 5.39976 5.47751 5.68526 5.79878 6.12767 6.56500 6.65863 6.70910 6.93175 7.26282 7.42306 7.47613 8.00238 8.73783 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.006745 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.664809 B = 4150.066419 C = 6058.391083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.138 4.138 5 C 0.510 3.490 6 O -0.571 6.571 7 N -0.642 5.642 8 C -0.085 4.085 9 C 0.002 3.998 10 C -0.332 4.332 11 C 0.431 3.569 12 N -0.841 5.841 13 N -0.618 5.618 14 C 0.389 3.611 15 N -0.554 5.554 16 C -0.299 4.299 17 H 0.098 0.902 18 C -0.027 4.027 19 N -0.926 5.926 20 Si 0.996 3.004 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.270 1.270 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.404 0.596 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.418 0.582 37 H 0.401 0.599 38 H 0.400 0.600 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 -4.872 -3.381 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.197 4.197 4 C -0.196 4.196 5 C 0.299 3.701 6 O -0.450 6.450 7 N -0.287 5.287 8 C -0.187 4.187 9 C -0.025 4.025 10 C -0.361 4.361 11 C 0.189 3.811 12 N -0.388 5.388 13 N -0.350 5.350 14 C 0.144 3.856 15 N -0.166 5.166 16 C -0.429 4.429 17 H 0.116 0.884 18 C -0.226 4.226 19 N -0.566 5.566 20 Si 0.820 3.180 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.194 1.194 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.241 0.759 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.250 0.750 37 H 0.230 0.770 38 H 0.236 0.764 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.360 -4.542 -2.634 9.041 hybrid contribution 0.442 0.301 -0.173 0.562 sum -6.918 -4.241 -2.806 8.586 Atomic orbital electron populations 1.21636 0.91163 1.02475 1.02568 1.20855 0.98495 0.96464 0.92393 1.21884 1.01216 0.93256 1.03367 1.21893 1.01368 1.00498 0.95809 1.21394 0.81303 0.79128 0.88311 1.90588 1.55819 1.50151 1.48465 1.43071 1.07522 1.59733 1.18393 1.17634 1.00140 1.04917 0.95983 1.20968 0.97217 0.90330 0.93960 1.20826 1.01136 1.11106 1.03016 1.18251 0.88435 0.87593 0.86804 1.42027 1.29751 1.42183 1.24793 1.66517 1.37532 1.17641 1.13299 1.17943 0.88971 0.89349 0.89347 1.40690 1.21227 1.30223 1.24448 1.19895 0.98560 1.15837 1.08647 0.88409 1.26044 1.02818 0.96875 0.96865 1.69731 1.41084 1.26553 1.19279 0.84860 0.77465 0.77250 0.78410 1.19915 1.20444 1.19430 0.93595 0.89106 0.92626 0.92737 0.88491 0.93552 0.92134 0.88644 0.92270 0.75946 0.84921 0.84137 0.75043 0.76993 0.76363 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 7.76 71.98 0.56 -2.19 16 2 C -0.08 -2.00 0.87 -52.92 -0.05 -2.05 16 3 C -0.14 -3.42 8.38 71.98 0.60 -2.81 16 4 C -0.14 -2.79 8.37 71.98 0.60 -2.19 16 5 C 0.51 17.84 6.34 87.66 0.56 18.39 16 6 O -0.57 -23.35 13.43 -3.07 -0.04 -23.39 16 7 N -0.64 -23.94 4.82 -302.55 -1.46 -25.39 16 8 C -0.08 -3.67 6.36 38.35 0.24 -3.42 16 9 C 0.00 0.09 8.80 22.53 0.20 0.29 16 10 C -0.33 -12.33 9.92 22.53 0.22 -12.10 16 11 C 0.43 16.90 7.74 133.00 1.03 17.93 16 12 N -0.84 -24.10 9.08 -55.38 -0.50 -24.61 16 13 N -0.62 -29.04 9.11 -190.11 -1.73 -30.77 16 14 C 0.39 18.79 7.45 133.20 0.99 19.78 16 15 N -0.55 -28.21 5.39 -188.90 -1.02 -29.23 16 16 C -0.30 -16.13 9.70 84.03 0.82 -15.31 16 17 H 0.10 5.42 7.07 -2.91 -0.02 5.40 16 18 C -0.03 -1.41 5.50 84.85 0.47 -0.94 16 19 N -0.93 -48.94 13.05 21.64 0.28 -48.66 16 20 Si 1.00 41.92 29.55 68.60 2.03 43.94 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 22 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H 0.04 1.18 8.10 -2.38 -0.02 1.16 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.32 8.10 -2.38 -0.02 1.30 16 27 H 0.05 1.47 7.68 -2.39 -0.02 1.45 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.23 7.46 -2.39 -0.02 1.22 16 33 H 0.40 14.09 6.53 -92.71 -0.61 13.48 16 34 H 0.13 5.29 6.27 -2.91 -0.02 5.27 16 35 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 36 H 0.42 8.75 8.82 -92.72 -0.82 7.93 16 37 H 0.40 11.02 8.95 -92.71 -0.83 10.19 16 38 H 0.40 19.88 6.45 -92.71 -0.60 19.28 16 39 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -65.67 325.46 2.07 -63.61 By element: Atomic # 1 Polarization: 60.87 SS G_CDS: -1.74 Total: 59.14 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.24 Total: 15.36 kcal Atomic # 7 Polarization: -154.23 SS G_CDS: -4.43 Total: -158.66 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.39 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -65.67 2.07 -63.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.162 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds