Wall clock time and date at job start Tue Mar 31 2020 00:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 C 1.52994 * 109.47141 * 240.00244 * 2 1 3 5 5 C 1.50707 * 109.47087 * 60.00073 * 4 2 1 6 6 H 1.07997 * 119.99735 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99590 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00542 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99525 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47444 * 89.99931 * 9 7 5 11 11 H 1.48507 * 109.47007 * 210.00207 * 9 7 5 12 12 H 1.48501 * 109.47261 * 329.99873 * 9 7 5 13 13 C 1.52999 * 109.47193 * 119.99920 * 2 1 3 14 14 N 1.46494 * 109.47529 * 300.00404 * 13 2 1 15 15 C 1.38266 * 120.00294 * 179.97438 * 14 13 2 16 16 N 1.32830 * 120.17059 * 5.29214 * 15 14 13 17 17 C 1.32029 * 119.98917 * 180.02562 * 16 15 14 18 18 C 1.38808 * 120.32245 * 359.97438 * 17 16 15 19 19 N 1.31722 * 120.34345 * 0.02562 * 18 17 16 20 20 C 1.33018 * 120.00992 * 359.97283 * 19 18 17 21 21 C 1.47741 * 120.16251 * 179.97438 * 20 19 18 22 22 N 1.34771 * 119.99616 * 354.49201 * 21 20 19 23 23 O 1.21562 * 119.99751 * 174.48983 * 21 20 19 24 24 H 1.09004 * 109.47097 * 299.99683 * 1 2 3 25 25 H 1.09002 * 109.47176 * 60.00045 * 1 2 3 26 26 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46930 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47347 * 300.00472 * 3 2 1 29 29 H 1.09003 * 109.46485 * 59.99969 * 3 2 1 30 30 H 1.08996 * 109.47139 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47293 * 300.00079 * 4 2 1 32 32 H 0.97001 * 120.00630 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.46924 * 180.02562 * 13 2 1 34 34 H 1.09000 * 109.47137 * 60.00396 * 13 2 1 35 35 H 0.97003 * 119.99962 * 359.97438 * 14 13 2 36 36 H 1.07998 * 119.84156 * 180.27347 * 17 16 15 37 37 H 1.08003 * 119.82709 * 179.97438 * 18 17 16 38 38 H 0.96999 * 120.00673 * 359.97438 * 22 21 20 39 39 H 0.97010 * 119.99628 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3805 7 6 1.8712 -0.4814 -3.7320 8 7 2.6273 -1.5506 -3.8527 9 14 1.2480 0.3988 -5.2571 10 1 2.2253 1.4413 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0607 1.0353 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8853 -0.5035 3.7012 16 7 2.7323 -1.5186 3.8291 17 6 3.0480 -1.9675 5.0299 18 6 2.4991 -1.3832 6.1631 19 7 1.6578 -0.3758 6.0513 20 6 1.3304 0.0872 4.8480 21 6 0.3867 1.2165 4.7186 22 7 -0.2298 1.7079 5.8117 23 8 0.1665 1.7025 3.6264 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 2.8616 -1.8820 -4.7337 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9943 0.7581 2.3565 36 1 3.7403 -2.7901 5.1313 37 1 2.7626 -1.7570 7.1415 38 1 -0.0544 1.3200 6.6832 39 1 -0.8492 2.4497 5.7268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163433025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:12 Heat of formation + Delta-G solvation = 0.958071 kcal Electronic energy + Delta-G solvation = -21713.854929 eV Core-core repulsion = 18463.144973 eV Total energy + Delta-G solvation = -3250.709956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.28720 -39.12544 -37.82491 -35.20017 -33.87585 -33.40905 -32.29250 -30.08602 -27.02235 -26.41490 -26.24184 -25.48312 -23.55137 -22.22199 -21.43499 -18.71832 -18.31661 -17.57356 -17.42495 -16.41246 -16.22075 -15.62236 -15.42706 -14.62963 -14.46069 -14.29322 -14.19148 -13.81226 -13.47293 -12.99260 -12.68399 -12.50105 -12.02686 -11.65011 -11.48121 -11.06061 -10.95464 -10.80801 -10.58506 -10.56131 -10.29576 -10.21019 -10.19151 -9.93016 -9.74373 -9.31581 -9.04081 -8.89081 -8.33156 -7.76001 -5.97474 -3.98090 0.49779 1.27936 2.63978 3.11433 3.33446 3.40019 3.42620 3.47775 3.81711 4.08155 4.26401 4.48080 4.53200 5.02175 5.12581 5.22206 5.38334 5.54554 5.66190 5.85361 6.06040 6.26974 6.28343 6.33016 6.48213 6.52764 6.70916 6.72020 6.98728 7.07518 7.13179 7.14159 7.16007 7.24969 7.54743 7.66492 7.79185 7.97532 8.01650 8.24699 8.44564 9.06496 9.64842 11.14089 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.004034 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.462635 B = 6938.857681 C = 7700.615723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 C -0.129 4.129 4 C 0.038 3.962 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.125 3.875 14 N -0.670 5.670 15 C 0.413 3.587 16 N -0.504 5.504 17 C 0.147 3.853 18 C -0.044 4.044 19 N -0.372 5.372 20 C -0.079 4.079 21 C 0.594 3.406 22 N -0.835 5.835 23 O -0.543 6.543 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.429 0.571 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.411 0.589 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 1.798 21.855 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 C -0.187 4.187 4 C 0.000 4.000 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.001 3.999 14 N -0.307 5.307 15 C 0.168 3.832 16 N -0.227 5.227 17 C -0.021 4.021 18 C -0.211 4.211 19 N -0.089 5.089 20 C -0.227 4.227 21 C 0.379 3.621 22 N -0.398 5.398 23 O -0.420 6.420 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.282 0.718 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.241 0.759 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.982 1.945 20.625 20.811 hybrid contribution -0.469 0.583 -0.440 0.868 sum -2.451 2.529 20.185 20.490 Atomic orbital electron populations 1.21781 0.95222 1.01022 1.00676 1.20908 0.95621 0.95939 0.94769 1.21778 1.00315 0.95947 1.00624 1.19083 0.96293 0.95156 0.89437 1.21204 1.31041 1.12055 0.90508 0.92226 1.24998 0.95340 0.95073 0.99041 1.69958 1.37127 1.23062 1.23383 0.86649 0.79252 0.79412 0.83025 1.20772 1.21344 1.19916 1.21802 0.99140 0.95967 0.82960 1.46183 1.51275 1.31745 1.01539 1.19280 0.87989 0.88676 0.87248 1.68321 1.15106 1.12820 1.26468 1.23868 0.94224 0.96294 0.87669 1.23225 1.00365 0.97103 1.00393 1.67905 1.08609 1.08500 1.23861 1.20940 1.07844 1.04276 0.89679 1.17549 0.79152 0.81172 0.84187 1.43487 1.47471 1.38321 1.10472 1.90523 1.64749 1.60572 1.26196 0.94755 0.91387 0.93533 0.93477 0.91379 0.94840 0.96331 0.96352 0.93088 0.91418 0.91672 0.71828 0.81058 0.81414 0.75935 0.76451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.05 37.16 0.30 -2.27 16 2 C -0.07 -1.48 0.54 -154.51 -0.08 -1.56 16 3 C -0.13 -2.56 8.05 37.16 0.30 -2.26 16 4 C 0.04 0.95 4.04 -27.88 -0.11 0.84 16 5 C -0.51 -13.92 7.65 -34.44 -0.26 -14.19 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.12 2.32 4.60 -4.05 -0.02 2.30 16 14 N -0.67 -11.52 4.97 -60.17 -0.30 -11.82 16 15 C 0.41 6.52 7.48 -154.88 -1.16 5.36 16 16 N -0.50 -7.37 9.73 -12.00 -0.12 -7.49 16 17 C 0.15 1.52 11.22 -17.26 -0.19 1.32 16 18 C -0.04 -0.41 11.21 -17.39 -0.19 -0.60 16 19 N -0.37 -4.29 9.71 -9.49 -0.09 -4.39 16 20 C -0.08 -1.10 6.77 -82.65 -0.56 -1.66 16 21 C 0.59 8.01 8.06 -12.38 -0.10 7.91 16 22 N -0.84 -7.44 8.86 30.50 0.27 -7.17 16 23 O -0.54 -8.89 14.48 5.31 0.08 -8.82 16 24 H 0.03 0.62 6.86 -51.93 -0.36 0.27 16 25 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 29 H 0.03 0.61 6.86 -51.93 -0.36 0.25 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.43 7.60 2.66 -40.96 -0.11 7.50 16 36 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.17 0.92 8.06 -52.48 -0.42 0.49 16 38 H 0.41 2.91 8.19 -40.82 -0.33 2.57 16 39 H 0.40 2.83 8.93 -40.82 -0.36 2.46 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -32.36 320.71 -6.82 -39.17 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.02 Total: 8.34 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.18 Total: -3.31 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.50 Total: -56.82 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.36 -6.82 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163433025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.132 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds