Wall clock time and date at job start Tue Mar 31 2020 00:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 C 1.52994 * 109.47141 * 240.00244 * 2 1 3 5 5 C 1.50707 * 109.47087 * 60.00073 * 4 2 1 6 6 H 1.07997 * 119.99735 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99590 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00542 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99525 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47444 * 89.99931 * 9 7 5 11 11 H 1.48507 * 109.47007 * 210.00207 * 9 7 5 12 12 H 1.48501 * 109.47261 * 329.99873 * 9 7 5 13 13 C 1.52999 * 109.47193 * 119.99920 * 2 1 3 14 14 N 1.46494 * 109.47529 * 300.00404 * 13 2 1 15 15 C 1.38266 * 120.00294 * 179.97438 * 14 13 2 16 16 N 1.32830 * 120.17059 * 5.29214 * 15 14 13 17 17 C 1.32029 * 119.98917 * 180.02562 * 16 15 14 18 18 C 1.38808 * 120.32245 * 359.97438 * 17 16 15 19 19 N 1.31722 * 120.34345 * 0.02562 * 18 17 16 20 20 C 1.33018 * 120.00992 * 359.97283 * 19 18 17 21 21 C 1.47741 * 120.16251 * 179.97438 * 20 19 18 22 22 N 1.34771 * 119.99616 * 354.49201 * 21 20 19 23 23 O 1.21562 * 119.99751 * 174.48983 * 21 20 19 24 24 H 1.09004 * 109.47097 * 299.99683 * 1 2 3 25 25 H 1.09002 * 109.47176 * 60.00045 * 1 2 3 26 26 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46930 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47347 * 300.00472 * 3 2 1 29 29 H 1.09003 * 109.46485 * 59.99969 * 3 2 1 30 30 H 1.08996 * 109.47139 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47293 * 300.00079 * 4 2 1 32 32 H 0.97001 * 120.00630 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.46924 * 180.02562 * 13 2 1 34 34 H 1.09000 * 109.47137 * 60.00396 * 13 2 1 35 35 H 0.97003 * 119.99962 * 359.97438 * 14 13 2 36 36 H 1.07998 * 119.84156 * 180.27347 * 17 16 15 37 37 H 1.08003 * 119.82709 * 179.97438 * 18 17 16 38 38 H 0.96999 * 120.00673 * 359.97438 * 22 21 20 39 39 H 0.97010 * 119.99628 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3805 7 6 1.8712 -0.4814 -3.7320 8 7 2.6273 -1.5506 -3.8527 9 14 1.2480 0.3988 -5.2571 10 1 2.2253 1.4413 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0607 1.0353 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8853 -0.5035 3.7012 16 7 2.7323 -1.5186 3.8291 17 6 3.0480 -1.9675 5.0299 18 6 2.4991 -1.3832 6.1631 19 7 1.6578 -0.3758 6.0513 20 6 1.3304 0.0872 4.8480 21 6 0.3867 1.2165 4.7186 22 7 -0.2298 1.7079 5.8117 23 8 0.1665 1.7025 3.6264 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 2.8616 -1.8820 -4.7337 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9943 0.7581 2.3565 36 1 3.7403 -2.7901 5.1313 37 1 2.7626 -1.7570 7.1415 38 1 -0.0544 1.3200 6.6832 39 1 -0.8492 2.4497 5.7268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163433025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:09 Heat of formation + Delta-G solvation = -23.364271 kcal Electronic energy + Delta-G solvation = -21714.909625 eV Core-core repulsion = 18463.144973 eV Total energy + Delta-G solvation = -3251.764652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 5.37 seconds Orbital eigenvalues (eV) -42.26767 -40.11163 -39.34932 -36.47629 -35.03929 -34.41052 -34.14882 -31.24136 -28.99766 -28.05584 -27.59118 -26.49863 -25.17439 -23.63595 -22.43314 -20.07623 -19.21445 -18.83853 -18.57716 -18.35670 -17.29234 -16.67441 -16.51322 -16.35029 -15.76260 -15.55105 -15.39533 -15.06214 -14.67369 -14.48764 -14.20201 -14.09964 -13.98044 -13.01247 -12.77171 -12.73392 -12.62727 -12.39767 -12.31398 -12.25752 -12.00742 -11.63722 -11.50330 -11.20549 -11.07457 -10.88569 -10.79043 -10.51571 -10.10400 -8.88087 -8.14739 -6.22071 -0.44093 0.33463 1.41504 1.41742 1.52464 1.67555 2.08432 2.42554 2.47818 2.87486 3.19367 3.23939 3.35951 3.55980 3.94624 4.03584 4.13384 4.23437 4.28642 4.50676 4.66306 4.68497 4.71291 4.89391 5.04219 5.04588 5.28658 5.39007 5.41349 5.44550 5.53441 5.72351 5.75267 5.87494 5.98001 6.07153 6.27841 6.31745 6.59875 6.91253 6.99585 7.25923 7.45101 8.97626 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.004034 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.462635 B = 6938.857681 C = 7700.615723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.067 4.067 3 C -0.120 4.120 4 C 0.046 3.954 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.145 3.855 14 N -0.684 5.684 15 C 0.388 3.612 16 N -0.534 5.534 17 C 0.147 3.853 18 C -0.020 4.020 19 N -0.373 5.373 20 C -0.093 4.093 21 C 0.586 3.414 22 N -0.811 5.811 23 O -0.579 6.579 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.050 0.950 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.261 0.739 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.425 0.575 36 H 0.214 0.786 37 H 0.218 0.782 38 H 0.422 0.578 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 2.126 24.256 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.178 4.178 4 C 0.009 3.991 5 C -0.556 4.556 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.188 1.188 13 C 0.021 3.979 14 N -0.324 5.324 15 C 0.146 3.854 16 N -0.258 5.258 17 C -0.020 4.020 18 C -0.188 4.188 19 N -0.090 5.090 20 C -0.239 4.239 21 C 0.371 3.629 22 N -0.373 5.373 23 O -0.459 6.459 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.277 0.723 36 H 0.230 0.770 37 H 0.234 0.766 38 H 0.254 0.746 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.302 2.299 23.108 23.336 hybrid contribution -0.286 0.354 -0.919 1.025 sum -2.588 2.653 22.189 22.497 Atomic orbital electron populations 1.21664 0.94412 1.00834 1.00833 1.20727 0.96172 0.96093 0.93704 1.21666 1.00004 0.95258 1.00830 1.18914 0.94489 0.94187 0.91557 1.21568 1.30614 1.12106 0.91324 0.91591 1.25876 0.95596 0.95827 1.02435 1.70095 1.38598 1.24724 1.24146 0.85572 0.79063 0.78241 0.78938 1.20090 1.21131 1.18820 1.21318 0.98192 0.95213 0.83221 1.45905 1.52790 1.32216 1.01533 1.19484 0.89075 0.89716 0.87090 1.68316 1.15425 1.13011 1.29043 1.24680 0.94011 0.96684 0.86579 1.24115 0.97570 0.94954 1.02173 1.68024 1.09310 1.09301 1.22357 1.20960 1.08338 1.04747 0.89846 1.17663 0.79429 0.81247 0.84513 1.43303 1.46306 1.37866 1.09875 1.90489 1.66063 1.61727 1.27649 0.93053 0.92563 0.93907 0.93863 0.92495 0.93113 0.98973 0.98985 0.93044 0.92580 0.92804 0.72251 0.76969 0.76570 0.74630 0.75174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 8.05 71.98 0.58 -4.26 16 2 C -0.07 -2.82 0.54 -52.18 -0.03 -2.85 16 3 C -0.12 -4.84 8.05 71.98 0.58 -4.26 16 4 C 0.05 2.43 4.04 29.85 0.12 2.55 16 5 C -0.52 -28.93 7.65 25.60 0.20 -28.74 16 6 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 7 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 8 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.15 5.61 4.60 86.38 0.40 6.01 16 14 N -0.68 -23.96 4.97 -344.26 -1.71 -25.67 16 15 C 0.39 12.13 7.48 133.50 1.00 13.13 16 16 N -0.53 -15.10 9.73 -191.86 -1.87 -16.97 16 17 C 0.15 2.57 11.22 84.80 0.95 3.52 16 18 C -0.02 -0.29 11.21 84.85 0.95 0.66 16 19 N -0.37 -7.53 9.71 -183.93 -1.79 -9.31 16 20 C -0.09 -2.48 6.77 42.01 0.28 -2.20 16 21 C 0.59 15.30 8.06 86.76 0.70 16.00 16 22 N -0.81 -13.01 8.86 -175.68 -1.56 -14.57 16 23 O -0.58 -18.92 14.48 -3.91 -0.06 -18.98 16 24 H 0.05 1.89 6.86 -2.38 -0.02 1.87 16 25 H 0.06 2.37 6.62 -2.39 -0.02 2.35 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.38 6.62 -2.39 -0.02 2.37 16 29 H 0.05 1.86 6.86 -2.39 -0.02 1.84 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.43 15.30 2.66 -94.96 -0.25 15.04 16 36 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.22 1.00 8.06 -2.91 -0.02 0.97 16 38 H 0.42 4.95 8.19 -92.71 -0.76 4.19 16 39 H 0.42 5.08 8.93 -92.70 -0.83 4.25 16 Total: -1.00 -72.56 320.71 0.79 -71.77 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.73 Total: 23.83 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.19 Total: 0.01 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -6.64 Total: -123.38 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.06 Total: -18.98 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -72.56 0.79 -71.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163433025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.401 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.38 seconds