Wall clock time and date at job start Tue Mar 31 2020 00:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36880 * 119.99968 * 2 1 4 4 H 1.07998 * 120.00216 * 206.68231 * 3 2 1 5 5 C 1.38797 * 119.99993 * 26.67857 * 3 2 1 6 6 N 1.31586 * 119.99766 * 9.32334 * 5 3 2 7 7 Si 1.86799 * 119.99941 * 189.32347 * 5 3 2 8 8 H 1.48494 * 109.47339 * 60.00097 * 7 5 3 9 9 H 1.48506 * 109.46851 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47190 * 299.99676 * 7 5 3 11 11 C 1.38963 * 120.00166 * 179.97438 * 2 1 3 12 12 C 1.39705 * 120.09090 * 184.99845 * 11 2 1 13 13 C 1.38338 * 117.96418 * 179.97438 * 12 11 2 14 14 C 1.39555 * 117.98993 * 0.02562 * 13 12 11 15 15 N 1.39546 * 120.05527 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99463 * 185.61432 * 15 14 13 17 17 O 1.21278 * 120.00226 * 355.30993 * 16 15 14 18 18 C 1.50701 * 119.99520 * 175.31589 * 16 15 14 19 19 C 1.53000 * 109.46655 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.47208 * 299.99366 * 18 16 15 21 21 C 1.52998 * 109.47422 * 59.99952 * 18 16 15 22 22 N 1.32347 * 119.88574 * 0.24905 * 14 13 12 23 23 N 1.28350 * 122.18704 * 359.47090 * 22 14 13 24 24 H 1.08999 * 109.47643 * 265.21466 * 1 2 3 25 25 H 1.09002 * 109.47441 * 25.22084 * 1 2 3 26 26 H 1.09004 * 109.47088 * 145.21891 * 1 2 3 27 27 H 0.97005 * 119.99679 * 180.02562 * 6 5 3 28 28 H 1.08002 * 121.01760 * 0.02562 * 12 11 2 29 29 H 1.08002 * 121.00247 * 180.02562 * 13 12 11 30 30 H 0.96992 * 120.00214 * 5.87969 * 15 14 13 31 31 H 1.08998 * 109.47646 * 59.99967 * 19 18 16 32 32 H 1.09006 * 109.46838 * 180.02562 * 19 18 16 33 33 H 1.09004 * 109.47041 * 299.99154 * 19 18 16 34 34 H 1.08998 * 109.46556 * 60.00046 * 20 18 16 35 35 H 1.09000 * 109.47208 * 180.02562 * 20 18 16 36 36 H 1.09003 * 109.47087 * 300.00845 * 20 18 16 37 37 H 1.08997 * 109.47161 * 59.99318 * 21 18 16 38 38 H 1.08994 * 109.47177 * 180.02562 * 21 18 16 39 39 H 1.09001 * 109.46751 * 299.99472 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1431 1.2353 -0.4200 5 6 1.5662 2.3234 0.5397 6 7 0.4395 2.2292 1.2129 7 14 2.3807 3.9888 0.3103 8 1 2.4862 4.2928 -1.1394 9 1 1.5645 5.0350 0.9769 10 1 3.7387 3.9625 0.9106 11 6 2.1598 -1.2034 0.0005 12 6 3.5529 -1.2079 0.1059 13 6 4.1998 -2.4307 0.1025 14 6 3.4208 -3.5834 -0.0065 15 7 4.0287 -4.8395 -0.0148 16 6 3.2888 -5.9447 -0.2333 17 8 2.0838 -5.8569 -0.3380 18 6 3.9591 -7.2896 -0.3475 19 6 2.9011 -8.3674 -0.5925 20 6 4.9473 -7.2695 -1.5154 21 6 4.7091 -7.5975 0.9500 22 7 2.1050 -3.4831 -0.1073 23 7 1.5031 -2.3495 -0.0992 24 1 -0.3634 -0.0857 1.0240 25 1 -0.3634 0.9297 -0.4379 26 1 -0.3633 -0.8441 -0.5862 27 1 0.0317 3.0246 1.5898 28 1 4.1077 -0.2849 0.1882 29 1 5.2752 -2.4913 0.1817 30 1 4.9829 -4.9175 0.1405 31 1 2.3664 -8.1484 -1.5166 32 1 3.3859 -9.3403 -0.6746 33 1 2.1975 -8.3817 0.2399 34 1 5.7008 -6.5017 -1.3404 35 1 5.4317 -8.2424 -1.5982 36 1 4.4129 -7.0501 -2.4398 37 1 4.0051 -7.6118 1.7820 38 1 5.1942 -8.5700 0.8673 39 1 5.4628 -6.8297 1.1249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:33 Heat of formation + Delta-G solvation = 39.223369 kcal Electronic energy + Delta-G solvation = -21525.936737 eV Core-core repulsion = 18276.886088 eV Total energy + Delta-G solvation = -3249.050649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38268 -39.24904 -36.49279 -35.44767 -34.42751 -32.25505 -31.61445 -28.94906 -27.50470 -27.18946 -26.77415 -24.59386 -23.98044 -22.21046 -21.41015 -19.16560 -17.76145 -17.31313 -16.71841 -16.14258 -15.56970 -15.13815 -14.69222 -14.42042 -14.17756 -13.94827 -13.61623 -13.44064 -13.01998 -12.64532 -12.49360 -12.43236 -12.28632 -11.86895 -11.82631 -11.61843 -11.29624 -11.06282 -11.03782 -10.88989 -10.76076 -10.57112 -10.48223 -10.35103 -9.49808 -9.15713 -9.09784 -8.53566 -8.28223 -6.91043 -6.52062 -4.00222 1.92553 2.17955 3.02452 3.08049 3.09992 3.18321 3.31183 3.87935 4.53039 4.60947 4.63126 4.71176 4.80031 5.03312 5.12776 5.37894 5.43035 5.46755 5.55064 5.63039 5.67397 5.75857 5.77767 5.80994 5.96652 6.01424 6.09705 6.25573 6.42010 6.68176 6.74607 6.83256 6.93588 7.18178 7.26125 7.30491 7.78639 7.82772 8.42363 8.62472 9.04634 9.31890 10.19211 10.45129 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042588 B = 0.003646 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.305168 B = 7677.785045 C = 8084.446077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.406 5.406 3 C -0.317 4.317 4 H 0.097 0.903 5 C 0.035 3.965 6 N -0.861 5.861 7 Si 0.933 3.067 8 H -0.271 1.271 9 H -0.280 1.280 10 H -0.270 1.270 11 C 0.285 3.715 12 C -0.161 4.161 13 C -0.109 4.109 14 C 0.158 3.842 15 N -0.646 5.646 16 C 0.504 3.496 17 O -0.482 6.482 18 C -0.085 4.085 19 C -0.127 4.127 20 C -0.139 4.139 21 C -0.141 4.141 22 N -0.179 5.179 23 N -0.325 5.325 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.274 0.726 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.404 0.596 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.922 -12.412 -1.896 16.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.097 5.097 3 C -0.446 4.446 4 H 0.114 0.886 5 C -0.172 4.172 6 N -0.496 5.496 7 Si 0.758 3.242 8 H -0.196 1.196 9 H -0.206 1.206 10 H -0.195 1.195 11 C 0.039 3.961 12 C -0.196 4.196 13 C -0.139 4.139 14 C -0.084 4.084 15 N -0.295 5.295 16 C 0.288 3.712 17 O -0.351 6.351 18 C -0.088 4.088 19 C -0.184 4.184 20 C -0.197 4.197 21 C -0.198 4.198 22 N -0.028 5.028 23 N -0.186 5.186 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.145 0.855 30 H 0.239 0.761 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.243 -12.675 -2.023 15.254 hybrid contribution 2.377 1.704 0.284 2.939 sum 10.620 -10.971 -1.738 15.368 Atomic orbital electron populations 1.21414 0.79288 1.00062 1.00969 1.42373 1.05215 1.00632 1.61453 1.19576 1.02454 0.84622 1.37991 0.88564 1.25485 0.96595 1.00491 0.94624 1.70087 1.17797 1.30679 1.31013 0.85891 0.79084 0.80301 0.78877 1.19575 1.20552 1.19529 1.20221 0.89887 0.88818 0.97177 1.21489 0.94009 0.98069 1.06069 1.21336 0.99589 0.91430 1.01558 1.19448 0.92267 0.84861 1.11792 1.43015 1.11210 1.03868 1.71451 1.20585 0.87833 0.85157 0.77587 1.90818 1.13506 1.85481 1.45298 1.20820 0.97182 0.93347 0.97479 1.21650 0.97527 0.96039 1.03219 1.21859 0.98178 1.02413 0.97250 1.21871 0.99993 1.02087 0.95856 1.72978 1.05788 1.16742 1.07271 1.72965 1.28940 0.92818 1.23833 0.93096 0.91132 0.93960 0.91557 0.84175 0.85496 0.76062 0.91828 0.92290 0.91824 0.92211 0.91561 0.91978 0.91915 0.91517 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.12 8.71 59.84 0.52 3.64 16 2 N -0.41 -10.42 3.11 -122.27 -0.38 -10.80 16 3 C -0.32 -7.97 8.84 -15.09 -0.13 -8.10 16 4 H 0.10 2.26 6.49 -52.49 -0.34 1.92 16 5 C 0.04 0.86 5.10 -17.45 -0.09 0.78 16 6 N -0.86 -22.21 10.79 55.49 0.60 -21.61 16 7 Si 0.93 18.83 29.56 -169.99 -5.03 13.81 16 8 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 9 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 10 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 11 C 0.28 7.02 7.42 -154.79 -1.15 5.88 16 12 C -0.16 -3.40 9.34 -39.00 -0.36 -3.77 16 13 C -0.11 -1.97 10.05 -39.05 -0.39 -2.36 16 14 C 0.16 3.14 7.51 -154.37 -1.16 1.98 16 15 N -0.65 -9.88 5.18 -11.26 -0.06 -9.94 16 16 C 0.50 8.11 6.44 -10.98 -0.07 8.04 16 17 O -0.48 -10.25 14.28 5.56 0.08 -10.17 16 18 C -0.08 -0.92 0.87 -155.66 -0.14 -1.06 16 19 C -0.13 -1.39 7.76 37.16 0.29 -1.10 16 20 C -0.14 -1.21 8.38 37.16 0.31 -0.90 16 21 C -0.14 -1.20 8.37 37.16 0.31 -0.89 16 22 N -0.18 -4.35 9.07 31.32 0.28 -4.06 16 23 N -0.33 -8.35 10.33 31.26 0.32 -8.03 16 24 H 0.05 1.31 7.82 -51.93 -0.41 0.91 16 25 H 0.07 1.75 6.82 -51.93 -0.35 1.39 16 26 H 0.04 1.00 7.47 -51.93 -0.39 0.62 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.14 2.76 6.45 -52.49 -0.34 2.42 16 29 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.40 4.37 7.58 -40.82 -0.31 4.07 16 31 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.43 7.46 -51.93 -0.39 0.04 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -32.00 323.49 -6.80 -38.80 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.44 Total: 4.97 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.06 Total: 2.15 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.77 Total: -54.44 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.00 -6.80 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.024 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds