Wall clock time and date at job start Tue Mar 31 2020 00:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36880 * 119.99968 * 2 1 4 4 H 1.07998 * 120.00216 * 206.68231 * 3 2 1 5 5 C 1.38797 * 119.99993 * 26.67857 * 3 2 1 6 6 N 1.31586 * 119.99766 * 9.32334 * 5 3 2 7 7 Si 1.86799 * 119.99941 * 189.32347 * 5 3 2 8 8 H 1.48494 * 109.47339 * 60.00097 * 7 5 3 9 9 H 1.48506 * 109.46851 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47190 * 299.99676 * 7 5 3 11 11 C 1.38963 * 120.00166 * 179.97438 * 2 1 3 12 12 C 1.39705 * 120.09090 * 184.99845 * 11 2 1 13 13 C 1.38338 * 117.96418 * 179.97438 * 12 11 2 14 14 C 1.39555 * 117.98993 * 0.02562 * 13 12 11 15 15 N 1.39546 * 120.05527 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99463 * 185.61432 * 15 14 13 17 17 O 1.21278 * 120.00226 * 355.30993 * 16 15 14 18 18 C 1.50701 * 119.99520 * 175.31589 * 16 15 14 19 19 C 1.53000 * 109.46655 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.47208 * 299.99366 * 18 16 15 21 21 C 1.52998 * 109.47422 * 59.99952 * 18 16 15 22 22 N 1.32347 * 119.88574 * 0.24905 * 14 13 12 23 23 N 1.28350 * 122.18704 * 359.47090 * 22 14 13 24 24 H 1.08999 * 109.47643 * 265.21466 * 1 2 3 25 25 H 1.09002 * 109.47441 * 25.22084 * 1 2 3 26 26 H 1.09004 * 109.47088 * 145.21891 * 1 2 3 27 27 H 0.97005 * 119.99679 * 180.02562 * 6 5 3 28 28 H 1.08002 * 121.01760 * 0.02562 * 12 11 2 29 29 H 1.08002 * 121.00247 * 180.02562 * 13 12 11 30 30 H 0.96992 * 120.00214 * 5.87969 * 15 14 13 31 31 H 1.08998 * 109.47646 * 59.99967 * 19 18 16 32 32 H 1.09006 * 109.46838 * 180.02562 * 19 18 16 33 33 H 1.09004 * 109.47041 * 299.99154 * 19 18 16 34 34 H 1.08998 * 109.46556 * 60.00046 * 20 18 16 35 35 H 1.09000 * 109.47208 * 180.02562 * 20 18 16 36 36 H 1.09003 * 109.47087 * 300.00845 * 20 18 16 37 37 H 1.08997 * 109.47161 * 59.99318 * 21 18 16 38 38 H 1.08994 * 109.47177 * 180.02562 * 21 18 16 39 39 H 1.09001 * 109.46751 * 299.99472 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1431 1.2353 -0.4200 5 6 1.5662 2.3234 0.5397 6 7 0.4395 2.2292 1.2129 7 14 2.3807 3.9888 0.3103 8 1 2.4862 4.2928 -1.1394 9 1 1.5645 5.0350 0.9769 10 1 3.7387 3.9625 0.9106 11 6 2.1598 -1.2034 0.0005 12 6 3.5529 -1.2079 0.1059 13 6 4.1998 -2.4307 0.1025 14 6 3.4208 -3.5834 -0.0065 15 7 4.0287 -4.8395 -0.0148 16 6 3.2888 -5.9447 -0.2333 17 8 2.0838 -5.8569 -0.3380 18 6 3.9591 -7.2896 -0.3475 19 6 2.9011 -8.3674 -0.5925 20 6 4.9473 -7.2695 -1.5154 21 6 4.7091 -7.5975 0.9500 22 7 2.1050 -3.4831 -0.1073 23 7 1.5031 -2.3495 -0.0992 24 1 -0.3634 -0.0857 1.0240 25 1 -0.3634 0.9297 -0.4379 26 1 -0.3633 -0.8441 -0.5862 27 1 0.0317 3.0246 1.5898 28 1 4.1077 -0.2849 0.1882 29 1 5.2752 -2.4913 0.1817 30 1 4.9829 -4.9175 0.1405 31 1 2.3664 -8.1484 -1.5166 32 1 3.3859 -9.3403 -0.6746 33 1 2.1975 -8.3817 0.2399 34 1 5.7008 -6.5017 -1.3404 35 1 5.4317 -8.2424 -1.5982 36 1 4.4129 -7.0501 -2.4398 37 1 4.0051 -7.6118 1.7820 38 1 5.1942 -8.5700 0.8673 39 1 5.4628 -6.8297 1.1249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:32 Heat of formation + Delta-G solvation = 18.818924 kcal Electronic energy + Delta-G solvation = -21526.821540 eV Core-core repulsion = 18276.886088 eV Total energy + Delta-G solvation = -3249.935452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90166 -40.74156 -38.22049 -36.52901 -35.96764 -34.04735 -33.27595 -30.65863 -28.67175 -28.15861 -28.03310 -26.29318 -25.58068 -23.66306 -23.05760 -20.43345 -19.49470 -18.76830 -18.17209 -17.84761 -17.05360 -16.50276 -16.33726 -15.73684 -15.61362 -15.28314 -14.81109 -14.75784 -14.63117 -14.18149 -14.05459 -13.35840 -13.26103 -13.04086 -12.99402 -12.83743 -12.67548 -12.58315 -12.54487 -12.21137 -12.19035 -12.04277 -11.85312 -11.81601 -11.25460 -10.83270 -10.58303 -10.17796 -9.95647 -8.71698 -8.33316 -5.90481 0.27936 0.52767 1.44461 1.49693 1.56504 1.82306 2.00426 2.22741 2.85642 2.86955 3.23220 3.53219 3.82204 3.92805 3.98678 4.11012 4.14555 4.29562 4.38253 4.69239 4.75545 4.78471 4.87112 4.88914 4.92609 4.99553 4.99625 5.04276 5.14204 5.22422 5.23664 5.28249 5.32785 5.39950 5.40158 5.75328 5.98079 6.51759 6.61664 7.21417 7.33400 7.52663 8.44634 8.66572 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042588 B = 0.003646 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.305168 B = 7677.785045 C = 8084.446077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.147 3.853 2 N -0.436 5.436 3 C -0.337 4.337 4 H 0.109 0.891 5 C -0.011 4.011 6 N -0.902 5.902 7 Si 1.004 2.996 8 H -0.265 1.265 9 H -0.284 1.284 10 H -0.258 1.258 11 C 0.269 3.731 12 C -0.167 4.167 13 C -0.085 4.085 14 C 0.175 3.825 15 N -0.631 5.631 16 C 0.497 3.503 17 O -0.540 6.540 18 C -0.075 4.075 19 C -0.128 4.128 20 C -0.137 4.137 21 C -0.138 4.138 22 N -0.231 5.231 23 N -0.367 5.367 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.273 0.727 28 H 0.157 0.843 29 H 0.191 0.809 30 H 0.430 0.570 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.496 -13.691 -2.078 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.130 5.130 3 C -0.465 4.465 4 H 0.126 0.874 5 C -0.214 4.214 6 N -0.538 5.538 7 Si 0.827 3.173 8 H -0.190 1.190 9 H -0.209 1.209 10 H -0.182 1.182 11 C 0.024 3.976 12 C -0.201 4.201 13 C -0.115 4.115 14 C -0.070 4.070 15 N -0.283 5.283 16 C 0.284 3.716 17 O -0.413 6.413 18 C -0.078 4.078 19 C -0.186 4.186 20 C -0.194 4.194 21 C -0.196 4.196 22 N -0.077 5.077 23 N -0.225 5.225 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.175 0.825 29 H 0.208 0.792 30 H 0.270 0.730 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.874 -14.034 -2.210 19.172 hybrid contribution 1.093 1.768 0.327 2.104 sum 13.967 -12.266 -1.883 18.684 Atomic orbital electron populations 1.21063 0.80166 0.99230 0.99194 1.42460 1.04980 1.01271 1.64302 1.19956 1.03130 0.84885 1.38551 0.87379 1.26429 0.97063 1.03913 0.93992 1.70218 1.19509 1.31459 1.32633 0.84815 0.78305 0.75385 0.78837 1.19018 1.20894 1.18233 1.20664 0.91624 0.88489 0.96870 1.21802 0.92617 1.00148 1.05542 1.21897 1.02354 0.89114 0.98139 1.19974 0.91554 0.87487 1.08016 1.43061 1.12484 1.02102 1.70618 1.21769 0.87393 0.86934 0.75459 1.90809 1.16448 1.86492 1.47560 1.20875 0.97425 0.89383 1.00143 1.21690 0.97534 0.98008 1.01331 1.21897 0.97643 1.04865 0.95044 1.21911 0.99773 1.04458 0.93436 1.72888 1.08428 1.16387 1.09967 1.72894 1.30556 0.93512 1.25536 0.95471 0.91976 0.94329 0.91700 0.82530 0.79160 0.72955 0.93895 0.88742 0.93831 0.90421 0.88559 0.93683 0.93532 0.88538 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.80 8.71 127.77 1.11 8.91 16 2 N -0.44 -23.17 3.11 -540.75 -1.68 -24.85 16 3 C -0.34 -17.16 8.84 84.04 0.74 -16.41 16 4 H 0.11 5.02 6.49 -2.91 -0.02 5.01 16 5 C -0.01 -0.57 5.10 84.86 0.43 -0.13 16 6 N -0.90 -48.31 10.79 21.65 0.23 -48.07 16 7 Si 1.00 38.60 29.56 68.60 2.03 40.63 16 8 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 9 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 10 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 11 C 0.27 13.53 7.42 133.20 0.99 14.52 16 12 C -0.17 -6.75 9.34 22.65 0.21 -6.54 16 13 C -0.09 -2.76 10.05 22.61 0.23 -2.53 16 14 C 0.17 6.63 7.51 132.99 1.00 7.62 16 15 N -0.63 -17.40 5.18 -307.93 -1.59 -19.00 16 16 C 0.50 15.34 6.44 87.66 0.56 15.91 16 17 O -0.54 -23.53 14.28 -3.02 -0.04 -23.58 16 18 C -0.07 -1.42 0.87 -52.93 -0.05 -1.47 16 19 C -0.13 -2.62 7.76 71.98 0.56 -2.06 16 20 C -0.14 -1.80 8.38 71.98 0.60 -1.20 16 21 C -0.14 -1.79 8.37 71.98 0.60 -1.18 16 22 N -0.23 -11.41 9.07 -54.81 -0.50 -11.91 16 23 N -0.37 -19.56 10.33 -55.02 -0.57 -20.13 16 24 H 0.03 1.50 7.82 -2.39 -0.02 1.48 16 25 H 0.06 3.29 6.82 -2.39 -0.02 3.27 16 26 H 0.04 1.98 7.47 -2.38 -0.02 1.96 16 27 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 28 H 0.16 5.78 6.45 -2.91 -0.02 5.76 16 29 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.43 7.11 7.58 -92.71 -0.70 6.41 16 31 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.04 1.05 8.10 -2.38 -0.02 1.03 16 34 H 0.08 0.75 7.68 -2.39 -0.02 0.73 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.72 7.46 -2.39 -0.02 0.70 16 Total: -1.00 -76.38 323.49 5.24 -71.15 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.36 Total: 20.31 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 7.00 Total: 15.45 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -4.11 Total: -123.96 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.04 Total: -23.58 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -76.38 5.24 -71.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.967 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds