Wall clock time and date at job start Tue Mar 31 2020 00:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46875 * 2 1 4 4 C 1.53001 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47140 * 180.02562 * 4 3 2 6 6 C 1.36812 * 119.99528 * 269.99768 * 5 4 3 7 7 H 1.08000 * 119.99386 * 145.45614 * 6 5 4 8 8 C 1.38907 * 120.00393 * 325.45774 * 6 5 4 9 9 N 1.31490 * 120.00118 * 337.58846 * 8 6 5 10 10 Si 1.86799 * 119.99988 * 157.58717 * 8 6 5 11 11 H 1.48504 * 109.47017 * 90.00138 * 10 8 6 12 12 H 1.48496 * 109.47272 * 210.00026 * 10 8 6 13 13 H 1.48492 * 109.47391 * 330.00253 * 10 8 6 14 14 C 1.38380 * 119.99966 * 90.00047 * 5 4 3 15 15 C 1.39699 * 120.04851 * 171.20731 * 14 5 4 16 16 C 1.38294 * 118.02428 * 179.97438 * 15 14 5 17 17 C 1.40090 * 118.00033 * 359.97438 * 16 15 14 18 18 C 1.47844 * 120.08928 * 179.97438 * 17 16 15 19 19 O 1.21558 * 119.99824 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99727 * 180.02562 * 18 17 16 21 21 C 1.46503 * 119.99999 * 180.02562 * 20 18 17 22 22 N 1.32834 * 119.81891 * 0.02562 * 17 16 15 23 23 N 1.28352 * 122.10441 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.47179 * 60.00577 * 1 2 3 25 25 H 1.09007 * 109.46588 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47349 * 299.99697 * 1 2 3 27 27 H 1.09000 * 109.47730 * 239.99685 * 2 1 3 28 28 H 1.09002 * 109.47179 * 119.99423 * 2 1 3 29 29 H 1.09000 * 109.47581 * 60.00036 * 3 2 1 30 30 H 1.08997 * 109.47211 * 299.99778 * 3 2 1 31 31 H 1.09002 * 109.47389 * 60.00303 * 4 3 2 32 32 H 1.09002 * 109.47296 * 299.99627 * 4 3 2 33 33 H 0.96998 * 120.00390 * 175.95555 * 9 8 6 34 34 H 1.07998 * 120.99217 * 359.95983 * 15 14 5 35 35 H 1.08005 * 120.99774 * 179.73031 * 16 15 14 36 36 H 0.97005 * 120.00354 * 0.02562 * 20 18 17 37 37 H 1.09003 * 109.46907 * 180.02562 * 21 20 18 38 38 H 1.08992 * 109.46968 * 300.00259 * 21 20 18 39 39 H 1.09001 * 109.46824 * 60.00525 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0013 6 6 4.2867 3.4690 -1.1833 7 1 4.0991 4.5294 -1.2655 8 6 4.7600 2.7603 -2.2803 9 7 5.3963 1.6233 -2.1037 10 14 4.4926 3.4226 -4.0063 11 1 5.6365 4.2899 -4.3865 12 1 4.3916 2.2898 -4.9611 13 1 3.2371 4.2148 -4.0436 14 6 4.2883 3.4758 1.2000 15 6 4.9241 4.7197 1.2089 16 6 5.1325 5.3342 2.4302 17 6 4.6925 4.6715 3.5834 18 6 4.8922 5.2861 4.9131 19 8 5.4382 6.3681 5.0068 20 7 4.4687 4.6468 6.0214 21 6 4.6660 5.2560 7.3390 22 7 4.0965 3.4890 3.4789 23 7 3.9039 2.9201 2.3447 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9287 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 5.6752 1.0993 -2.8708 34 1 5.2437 5.1875 0.2895 35 1 5.6232 6.2942 2.4933 36 1 4.0332 3.7832 5.9466 37 1 4.2625 4.5972 8.1080 38 1 5.7311 5.4077 7.5133 39 1 4.1513 6.2161 7.3761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:34 Heat of formation + Delta-G solvation = -1.710968 kcal Electronic energy + Delta-G solvation = -21447.955385 eV Core-core repulsion = 18197.129691 eV Total energy + Delta-G solvation = -3250.825695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.71108 -40.23184 -38.63148 -35.75085 -35.56115 -34.34768 -33.66529 -31.92754 -29.90737 -28.20088 -26.80857 -25.34831 -24.88204 -22.98649 -21.91234 -21.85576 -19.65128 -19.24524 -18.05653 -17.98750 -16.71809 -16.52005 -16.40838 -16.17080 -15.60289 -15.48221 -15.37805 -14.76268 -14.72406 -14.00611 -13.89927 -13.77081 -13.61674 -13.28077 -13.19728 -13.02861 -12.94499 -12.59401 -12.26690 -12.06781 -11.97196 -11.79916 -11.55852 -11.34369 -11.07407 -10.94963 -10.73384 -10.34276 -10.09479 -9.06723 -8.41745 -6.10633 -0.01859 0.23990 1.40463 1.44712 1.56143 1.86091 2.12532 2.32123 2.68134 2.75898 3.12080 3.48659 3.89812 4.08681 4.12759 4.14468 4.23953 4.33569 4.41466 4.52021 4.53780 4.68002 4.86681 4.87052 4.92503 4.96844 5.00067 5.07891 5.18276 5.20513 5.24443 5.37682 5.40517 5.47406 5.50340 5.56003 5.93631 6.45209 6.54226 7.06558 7.20907 7.33302 8.11862 8.46662 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.005022 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.639036 B = 5574.516421 C = 6913.643700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.114 4.114 4 C 0.113 3.887 5 N -0.390 5.390 6 C -0.342 4.342 7 H 0.099 0.901 8 C 0.013 3.987 9 N -0.869 5.869 10 Si 0.988 3.012 11 H -0.270 1.270 12 H -0.273 1.273 13 H -0.261 1.261 14 C 0.288 3.712 15 C -0.198 4.198 16 C -0.033 4.033 17 C -0.122 4.122 18 C 0.591 3.409 19 O -0.582 6.582 20 N -0.715 5.715 21 C 0.085 3.915 22 N -0.165 5.165 23 N -0.348 5.348 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.281 0.719 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.417 0.583 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -0.525 5.656 7.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.152 4.152 4 C -0.010 4.010 5 N -0.075 5.075 6 C -0.471 4.471 7 H 0.117 0.883 8 C -0.194 4.194 9 N -0.502 5.502 10 Si 0.810 3.190 11 H -0.195 1.195 12 H -0.198 1.198 13 H -0.185 1.185 14 C 0.044 3.956 15 C -0.232 4.232 16 C -0.061 4.061 17 C -0.275 4.275 18 C 0.378 3.622 19 O -0.462 6.462 20 N -0.366 5.366 21 C -0.058 4.058 22 N -0.017 5.017 23 N -0.211 5.211 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.253 0.747 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.460 -1.300 6.044 8.248 hybrid contribution 0.723 1.059 -1.584 2.038 sum -4.737 -0.241 4.460 6.510 Atomic orbital electron populations 1.21712 0.94422 1.02282 1.01674 1.21392 0.96902 0.95002 1.01940 1.21757 0.94867 0.97962 1.00631 1.21721 0.93856 0.82551 1.02901 1.42688 1.51837 1.12109 1.00917 1.19866 1.44334 0.96430 0.86485 0.88306 1.26257 0.92469 0.96602 1.04022 1.70039 1.30740 1.15491 1.33907 0.85018 0.79359 0.78383 0.76256 1.19539 1.19780 1.18516 1.20653 0.93136 0.93067 0.88783 1.21679 1.05087 0.96889 0.99515 1.21962 0.93919 0.99586 0.90624 1.21896 1.12829 0.97667 0.95073 1.17521 0.77394 0.83677 0.83656 1.90688 1.45788 1.22434 1.87313 1.45629 1.60425 1.24311 1.06225 1.21758 1.01931 0.99545 0.82542 1.72518 1.05391 1.06138 1.17668 1.72909 1.25872 1.28794 0.93515 0.92896 0.91148 0.92916 0.92124 0.91854 0.93472 0.93161 0.88531 0.93062 0.90841 0.83496 0.82758 0.74655 0.86891 0.92685 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.81 16 2 C -0.11 -3.43 5.93 30.59 0.18 -3.25 16 3 C -0.11 -4.27 5.54 30.59 0.17 -4.10 16 4 C 0.11 4.97 4.96 86.38 0.43 5.40 16 5 N -0.39 -18.51 2.63 -517.49 -1.36 -19.87 16 6 C -0.34 -16.25 8.39 84.08 0.71 -15.54 16 7 H 0.10 4.55 7.09 -2.91 -0.02 4.52 16 8 C 0.01 0.61 4.96 84.90 0.42 1.03 16 9 N -0.87 -42.11 11.31 21.66 0.24 -41.86 16 10 Si 0.99 36.14 29.61 68.60 2.03 38.18 16 11 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 12 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 13 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 14 C 0.29 13.48 7.38 133.25 0.98 14.46 16 15 C -0.20 -8.54 9.32 22.64 0.21 -8.33 16 16 C -0.03 -1.33 9.71 22.73 0.22 -1.11 16 17 C -0.12 -4.90 6.83 41.99 0.29 -4.62 16 18 C 0.59 21.50 7.80 86.79 0.68 22.18 16 19 O -0.58 -23.61 16.38 -3.90 -0.06 -23.67 16 20 N -0.72 -19.88 5.70 -487.47 -2.78 -22.66 16 21 C 0.09 1.72 10.70 127.77 1.37 3.09 16 22 N -0.17 -6.90 10.73 -48.46 -0.52 -7.42 16 23 N -0.35 -15.88 10.40 -55.14 -0.57 -16.45 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 4.53 5.33 -2.39 -0.01 4.52 16 32 H 0.05 2.33 7.53 -2.39 -0.02 2.31 16 33 H 0.28 12.69 8.32 -92.71 -0.77 11.92 16 34 H 0.15 6.07 6.71 -2.91 -0.02 6.05 16 35 H 0.15 5.51 7.71 -2.91 -0.02 5.49 16 36 H 0.42 10.58 8.17 -92.70 -0.76 9.82 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -58.15 331.79 3.65 -54.50 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.30 Total: 32.84 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.37 Total: 6.40 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.99 Total: -108.25 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.18 kcal Total: -58.15 3.65 -54.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.791 kcal (2) G-P(sol) polarization free energy of solvation -58.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds