Wall clock time and date at job start Tue Mar 31 2020 00:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 C 1.53002 * 109.46846 * 119.99823 * 2 1 3 5 5 C 1.53001 * 109.46932 * 183.91661 * 4 2 1 6 6 N 1.46493 * 109.47221 * 303.91908 * 4 2 1 7 7 C 1.37943 * 119.99911 * 186.31799 * 6 4 2 8 8 N 1.32612 * 120.23530 * 4.52550 * 7 6 4 9 9 C 1.32245 * 120.08658 * 179.97438 * 8 7 6 10 10 C 1.38971 * 120.56645 * 359.97438 * 9 8 7 11 11 N 1.31715 * 120.47814 * 0.02562 * 10 9 8 12 12 C 1.33910 * 119.89164 * 0.02562 * 11 10 9 13 13 C 1.40826 * 120.27357 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99481 * 179.97438 * 13 12 11 15 15 C 1.40111 * 119.99926 * 359.97438 * 13 12 11 16 16 N 1.30731 * 120.00671 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99811 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47413 * 59.99757 * 17 15 13 19 19 H 1.48500 * 109.46948 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46869 * 300.00028 * 17 15 13 21 21 C 1.50702 * 109.47167 * 63.91948 * 4 2 1 22 22 N 1.34770 * 120.00052 * 210.45986 * 21 4 2 23 23 O 1.21285 * 119.99589 * 30.45781 * 21 4 2 24 24 H 1.08999 * 109.47333 * 300.00618 * 1 2 3 25 25 H 1.09001 * 109.46826 * 59.99910 * 1 2 3 26 26 H 1.08995 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47614 * 239.99853 * 2 1 3 28 28 H 1.08998 * 109.47138 * 305.37297 * 3 2 1 29 29 H 1.09007 * 109.46668 * 65.37496 * 3 2 1 30 30 H 1.08996 * 109.47260 * 185.37268 * 3 2 1 31 31 H 1.09001 * 109.46895 * 180.02562 * 5 4 2 32 32 H 1.08995 * 109.47442 * 299.99980 * 5 4 2 33 33 H 1.08998 * 109.47083 * 60.00246 * 5 4 2 34 34 H 0.96995 * 120.00195 * 6.31475 * 6 4 2 35 35 H 1.07998 * 119.71715 * 180.02562 * 9 8 7 36 36 H 1.07998 * 119.75660 * 179.74079 * 10 9 8 37 37 H 0.96999 * 120.00780 * 179.97438 * 16 15 13 38 38 H 0.96995 * 120.00256 * 5.26228 * 22 21 4 39 39 H 0.97006 * 120.00101 * 185.26259 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5668 -0.6365 1.2996 6 7 1.4761 -0.0873 2.4435 7 6 1.8948 -0.4824 3.6971 8 7 2.8707 -1.3710 3.8258 9 6 3.2702 -1.7474 5.0290 10 6 2.6757 -1.2188 6.1685 11 7 1.7045 -0.3349 6.0665 12 6 1.2846 0.0588 4.8574 13 6 0.2465 1.0030 4.7390 14 1 -0.0883 1.3176 3.7617 15 6 -0.3518 1.5342 5.8892 16 7 0.0532 1.1530 7.0724 17 14 -1.7293 2.7862 5.7322 18 1 -2.8620 2.1847 4.9837 19 1 -2.1882 3.1896 7.0857 20 1 -1.2322 3.9801 5.0023 21 6 1.6184 -2.1673 1.2017 22 7 1.3841 -2.8389 2.3464 23 8 1.4901 -2.7267 0.1332 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6003 1.9834 -0.8379 29 1 1.7574 1.9278 0.9343 30 1 3.1258 1.4440 -0.0962 31 1 3.9301 -1.1507 2.1893 32 1 3.9863 -1.1082 0.4110 33 1 3.8717 0.4094 1.3340 34 1 0.8083 0.6104 2.3528 35 1 4.0658 -2.4712 5.1269 36 1 3.0093 -1.5386 7.1446 37 1 -0.3608 1.5210 7.8687 38 1 1.4120 -2.3728 3.1966 39 1 1.1874 -3.7885 2.3201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167404282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:46 Heat of formation + Delta-G solvation = 23.458102 kcal Electronic energy + Delta-G solvation = -23114.172718 eV Core-core repulsion = 19864.438436 eV Total energy + Delta-G solvation = -3249.734282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.34691 -38.72113 -36.52782 -34.30975 -33.86295 -32.22164 -31.62083 -30.15166 -28.41827 -26.93941 -26.11200 -23.97001 -22.34325 -21.72372 -21.05346 -18.63137 -17.80012 -17.38559 -16.86331 -16.13239 -15.50624 -14.92574 -14.46244 -14.37657 -14.12147 -13.98662 -13.64429 -13.12527 -12.93502 -12.58053 -12.24163 -12.17989 -11.92586 -11.87979 -11.57018 -11.44923 -11.39248 -10.82444 -10.77012 -10.54379 -10.48106 -10.37616 -10.18660 -9.76570 -9.39453 -9.11064 -8.94673 -8.67577 -7.49995 -7.00233 -6.57718 -4.60873 2.47495 2.87909 2.96947 2.97741 3.05439 3.21504 3.77356 4.07806 4.27197 4.56449 4.94190 5.17485 5.27371 5.59001 5.65322 5.70591 5.79596 5.82553 5.88668 5.98719 6.06435 6.11810 6.15352 6.23644 6.27772 6.34290 6.49818 6.55602 6.61151 6.81273 6.88691 7.01732 7.37995 7.48366 7.78516 7.90070 8.11882 8.19603 8.44214 8.66791 8.92830 9.19298 9.80220 10.07174 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.007659 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.273460 B = 3654.887377 C = 4656.546599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.147 4.147 4 C 0.185 3.815 5 C -0.166 4.166 6 N -0.712 5.712 7 C 0.244 3.756 8 N -0.487 5.487 9 C -0.095 4.095 10 C 0.041 3.959 11 N -0.447 5.447 12 C 0.196 3.804 13 C -0.415 4.415 14 H 0.083 0.917 15 C 0.068 3.932 16 N -0.707 5.707 17 Si 0.907 3.093 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.263 1.263 21 C 0.526 3.474 22 N -0.838 5.838 23 O -0.575 6.575 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.407 0.593 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.277 0.723 38 H 0.410 0.590 39 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 0.779 -5.918 6.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.204 4.204 4 C 0.094 3.906 5 C -0.225 4.225 6 N -0.357 5.357 7 C -0.001 4.001 8 N -0.211 5.211 9 C -0.249 4.249 10 C -0.123 4.123 11 N -0.164 5.164 12 C 0.063 3.937 13 C -0.449 4.449 14 H 0.101 0.899 15 C -0.159 4.159 16 N -0.328 5.328 17 Si 0.731 3.269 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.187 1.187 21 C 0.309 3.691 22 N -0.407 5.407 23 O -0.455 6.455 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.247 0.753 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.775 0.474 -6.337 6.402 hybrid contribution -0.777 0.503 0.499 1.051 sum -0.001 0.977 -5.838 5.920 Atomic orbital electron populations 1.21866 0.94981 1.02328 1.01553 1.21184 0.96223 0.96211 0.96866 1.21899 1.01229 0.95306 1.02009 1.20111 0.95285 0.88619 0.86620 1.22385 0.92893 1.02972 1.04229 1.43989 1.47403 1.44055 1.00262 1.19358 0.96104 0.98093 0.86518 1.67310 1.12341 1.14847 1.26594 1.22342 1.06343 1.07795 0.88423 1.23212 0.95364 0.95876 0.97840 1.69547 1.11974 1.12216 1.22709 1.19022 0.94196 0.94356 0.86135 1.19265 1.13411 1.18382 0.93822 0.89875 1.26020 0.97826 0.97133 0.94904 1.70061 1.32631 1.31733 0.98397 0.86370 0.80975 0.80820 0.78735 1.18751 1.20045 1.18747 1.21102 0.74821 0.89602 0.83545 1.44699 1.72057 1.12679 1.11225 1.90635 1.54067 1.70852 1.29972 0.92460 0.92542 0.92282 0.89334 0.92701 0.92030 0.92287 0.87651 0.93028 0.91966 0.75280 0.85638 0.85652 0.91137 0.74896 0.78963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.76 37.16 0.33 -1.84 16 2 C -0.09 -1.28 1.97 -90.62 -0.18 -1.46 16 3 C -0.15 -1.90 8.48 37.16 0.32 -1.59 16 4 C 0.19 3.21 0.42 -132.97 -0.06 3.15 16 5 C -0.17 -2.83 7.82 37.16 0.29 -2.54 16 6 N -0.71 -13.24 4.41 -48.29 -0.21 -13.45 16 7 C 0.24 5.23 5.34 -154.82 -0.83 4.40 16 8 N -0.49 -10.10 4.65 -11.67 -0.05 -10.15 16 9 C -0.10 -1.95 11.22 -17.10 -0.19 -2.14 16 10 C 0.04 0.90 11.21 -17.33 -0.19 0.71 16 11 N -0.45 -11.16 8.03 -10.79 -0.09 -11.25 16 12 C 0.20 4.73 6.56 -84.61 -0.56 4.17 16 13 C -0.42 -9.72 8.89 -37.90 -0.34 -10.06 16 14 H 0.08 1.76 6.13 -52.49 -0.32 1.44 16 15 C 0.07 1.56 5.50 -17.32 -0.10 1.47 16 16 N -0.71 -17.26 11.48 55.56 0.64 -16.62 16 17 Si 0.91 16.93 29.56 -169.99 -5.03 11.90 16 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 21 C 0.53 10.11 5.96 -10.99 -0.07 10.05 16 22 N -0.84 -15.55 8.22 31.22 0.26 -15.30 16 23 O -0.58 -12.11 16.44 5.55 0.09 -12.02 16 24 H 0.06 0.82 6.52 -51.93 -0.34 0.48 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.96 6.98 -51.93 -0.36 0.59 16 27 H 0.09 1.36 7.71 -51.93 -0.40 0.96 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.84 7.13 -51.92 -0.37 0.47 16 30 H 0.06 0.74 6.68 -51.93 -0.35 0.39 16 31 H 0.11 2.01 5.34 -51.93 -0.28 1.73 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.00 6.48 -51.93 -0.34 0.66 16 34 H 0.41 7.31 4.20 -40.82 -0.17 7.14 16 35 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 37 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 38 H 0.41 8.17 4.14 -40.82 -0.17 8.00 16 39 H 0.38 6.38 8.93 -40.82 -0.36 6.02 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -27.08 305.33 -6.07 -33.15 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -4.71 Total: 24.81 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.57 Total: 4.33 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: 0.54 Total: -66.77 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.08 -6.07 -33.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167404282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.608 kcal (2) G-P(sol) polarization free energy of solvation -27.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds