Wall clock time and date at job start Tue Mar 31 2020 00:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 C 1.53002 * 109.46846 * 119.99823 * 2 1 3 5 5 C 1.53001 * 109.46932 * 183.91661 * 4 2 1 6 6 N 1.46493 * 109.47221 * 303.91908 * 4 2 1 7 7 C 1.37943 * 119.99911 * 186.31799 * 6 4 2 8 8 N 1.32612 * 120.23530 * 4.52550 * 7 6 4 9 9 C 1.32245 * 120.08658 * 179.97438 * 8 7 6 10 10 C 1.38971 * 120.56645 * 359.97438 * 9 8 7 11 11 N 1.31715 * 120.47814 * 0.02562 * 10 9 8 12 12 C 1.33910 * 119.89164 * 0.02562 * 11 10 9 13 13 C 1.40826 * 120.27357 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99481 * 179.97438 * 13 12 11 15 15 C 1.40111 * 119.99926 * 359.97438 * 13 12 11 16 16 N 1.30731 * 120.00671 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99811 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47413 * 59.99757 * 17 15 13 19 19 H 1.48500 * 109.46948 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46869 * 300.00028 * 17 15 13 21 21 C 1.50702 * 109.47167 * 63.91948 * 4 2 1 22 22 N 1.34770 * 120.00052 * 210.45986 * 21 4 2 23 23 O 1.21285 * 119.99589 * 30.45781 * 21 4 2 24 24 H 1.08999 * 109.47333 * 300.00618 * 1 2 3 25 25 H 1.09001 * 109.46826 * 59.99910 * 1 2 3 26 26 H 1.08995 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47614 * 239.99853 * 2 1 3 28 28 H 1.08998 * 109.47138 * 305.37297 * 3 2 1 29 29 H 1.09007 * 109.46668 * 65.37496 * 3 2 1 30 30 H 1.08996 * 109.47260 * 185.37268 * 3 2 1 31 31 H 1.09001 * 109.46895 * 180.02562 * 5 4 2 32 32 H 1.08995 * 109.47442 * 299.99980 * 5 4 2 33 33 H 1.08998 * 109.47083 * 60.00246 * 5 4 2 34 34 H 0.96995 * 120.00195 * 6.31475 * 6 4 2 35 35 H 1.07998 * 119.71715 * 180.02562 * 9 8 7 36 36 H 1.07998 * 119.75660 * 179.74079 * 10 9 8 37 37 H 0.96999 * 120.00780 * 179.97438 * 16 15 13 38 38 H 0.96995 * 120.00256 * 5.26228 * 22 21 4 39 39 H 0.97006 * 120.00101 * 185.26259 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5668 -0.6365 1.2996 6 7 1.4761 -0.0873 2.4435 7 6 1.8948 -0.4824 3.6971 8 7 2.8707 -1.3710 3.8258 9 6 3.2702 -1.7474 5.0290 10 6 2.6757 -1.2188 6.1685 11 7 1.7045 -0.3349 6.0665 12 6 1.2846 0.0588 4.8574 13 6 0.2465 1.0030 4.7390 14 1 -0.0883 1.3176 3.7617 15 6 -0.3518 1.5342 5.8892 16 7 0.0532 1.1530 7.0724 17 14 -1.7293 2.7862 5.7322 18 1 -2.8620 2.1847 4.9837 19 1 -2.1882 3.1896 7.0857 20 1 -1.2322 3.9801 5.0023 21 6 1.6184 -2.1673 1.2017 22 7 1.3841 -2.8389 2.3464 23 8 1.4901 -2.7267 0.1332 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6003 1.9834 -0.8379 29 1 1.7574 1.9278 0.9343 30 1 3.1258 1.4440 -0.0962 31 1 3.9301 -1.1507 2.1893 32 1 3.9863 -1.1082 0.4110 33 1 3.8717 0.4094 1.3340 34 1 0.8083 0.6104 2.3528 35 1 4.0658 -2.4712 5.1269 36 1 3.0093 -1.5386 7.1446 37 1 -0.3608 1.5210 7.8687 38 1 1.4120 -2.3728 3.1966 39 1 1.1874 -3.7885 2.3201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167404282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:43 Heat of formation + Delta-G solvation = 5.813523 kcal Electronic energy + Delta-G solvation = -23114.937845 eV Core-core repulsion = 19864.438436 eV Total energy + Delta-G solvation = -3250.499408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -41.88069 -40.34335 -37.98560 -35.95782 -35.37373 -33.76825 -33.30861 -31.56902 -29.96448 -28.10518 -27.79217 -25.36930 -24.03313 -23.37143 -22.38666 -20.09054 -19.50372 -18.89753 -18.41870 -17.65626 -17.11347 -16.58704 -15.92610 -15.88084 -15.52550 -15.32824 -15.14312 -14.71736 -14.44420 -13.91486 -13.79712 -13.50138 -13.33379 -13.17278 -13.02989 -12.88509 -12.70786 -12.37561 -12.11155 -11.97183 -11.83968 -11.69914 -11.62391 -11.36995 -11.06054 -10.69814 -10.51248 -10.31652 -9.19541 -8.64922 -8.26131 -6.34053 0.79418 1.19035 1.45354 1.55382 1.56923 1.68644 2.22787 2.56081 2.82198 2.87832 3.66680 3.87694 3.95969 3.99141 4.19799 4.28378 4.33825 4.44985 4.58168 4.64986 4.79354 4.83683 4.93959 4.96579 5.00589 5.05455 5.14371 5.17236 5.22295 5.36204 5.46509 5.59040 5.82476 5.91817 6.11376 6.25352 6.54512 6.63204 6.75698 6.98026 7.40356 7.54013 8.09696 8.41597 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.007659 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.273460 B = 3654.887377 C = 4656.546599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.142 4.142 4 C 0.184 3.816 5 C -0.161 4.161 6 N -0.702 5.702 7 C 0.249 3.751 8 N -0.486 5.486 9 C -0.086 4.086 10 C 0.019 3.981 11 N -0.482 5.482 12 C 0.167 3.833 13 C -0.440 4.440 14 H 0.098 0.902 15 C 0.027 3.973 16 N -0.749 5.749 17 Si 0.979 3.021 18 H -0.258 1.258 19 H -0.275 1.275 20 H -0.256 1.256 21 C 0.521 3.479 22 N -0.836 5.836 23 O -0.595 6.595 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.410 0.590 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.280 0.720 38 H 0.405 0.595 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 1.656 -7.331 7.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 C -0.199 4.199 4 C 0.093 3.907 5 C -0.220 4.220 6 N -0.346 5.346 7 C 0.004 3.996 8 N -0.210 5.210 9 C -0.239 4.239 10 C -0.143 4.143 11 N -0.200 5.200 12 C 0.033 3.967 13 C -0.474 4.474 14 H 0.116 0.884 15 C -0.196 4.196 16 N -0.371 5.371 17 Si 0.799 3.201 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.180 1.180 21 C 0.305 3.695 22 N -0.405 5.405 23 O -0.476 6.476 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.251 0.749 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.665 1.331 -7.771 7.912 hybrid contribution -0.644 0.104 0.900 1.111 sum 0.022 1.435 -6.872 7.020 Atomic orbital electron populations 1.21852 0.94621 1.01228 1.02791 1.21203 0.96531 0.97207 0.95211 1.21868 1.01671 0.93790 1.02591 1.20281 0.95602 0.87705 0.87103 1.22317 0.92446 1.03448 1.03782 1.43979 1.47111 1.43736 0.99777 1.19391 0.95689 0.97591 0.86977 1.67490 1.12195 1.14769 1.26549 1.22798 1.06013 1.07121 0.87975 1.23558 0.95426 0.96033 0.99291 1.69475 1.13252 1.13454 1.23801 1.19394 0.95144 0.95313 0.86845 1.19645 1.13945 1.18989 0.94856 0.88418 1.26876 0.99818 0.98626 0.94307 1.70170 1.34333 1.33425 0.99219 0.85290 0.77819 0.78339 0.78603 1.18256 1.20005 1.17952 1.21467 0.74420 0.90374 0.83232 1.44690 1.71718 1.13203 1.10848 1.90622 1.55015 1.71448 1.30531 0.92518 0.90034 0.94488 0.89447 0.90367 0.92830 0.91781 0.89554 0.91929 0.90988 0.74912 0.82803 0.83936 0.90935 0.75484 0.78134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.76 71.98 0.63 -3.33 16 2 C -0.08 -2.28 1.97 -10.79 -0.02 -2.30 16 3 C -0.14 -3.25 8.48 71.98 0.61 -2.64 16 4 C 0.18 6.11 0.42 2.86 0.00 6.11 16 5 C -0.16 -5.21 7.82 71.98 0.56 -4.65 16 6 N -0.70 -25.36 4.41 -306.70 -1.35 -26.71 16 7 C 0.25 10.54 5.34 134.03 0.72 11.26 16 8 N -0.49 -19.74 4.65 -190.82 -0.89 -20.62 16 9 C -0.09 -3.41 11.22 84.81 0.95 -2.46 16 10 C 0.02 0.86 11.21 84.89 0.95 1.81 16 11 N -0.48 -24.43 8.03 -188.05 -1.51 -25.94 16 12 C 0.17 8.12 6.56 40.35 0.26 8.38 16 13 C -0.44 -20.67 8.89 23.36 0.21 -20.47 16 14 H 0.10 4.08 6.13 -2.91 -0.02 4.06 16 15 C 0.03 1.22 5.50 85.31 0.47 1.69 16 16 N -0.75 -37.28 11.48 21.85 0.25 -37.03 16 17 Si 0.98 34.40 29.56 68.60 2.03 36.42 16 18 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 19 H -0.28 -9.53 7.11 99.48 0.71 -8.82 16 20 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 21 C 0.52 19.51 5.96 87.66 0.52 20.04 16 22 N -0.84 -30.52 8.22 -173.53 -1.43 -31.95 16 23 O -0.59 -24.46 16.44 -3.05 -0.05 -24.52 16 24 H 0.06 1.51 6.52 -2.39 -0.02 1.50 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.15 6.98 -2.39 -0.02 1.13 16 27 H 0.09 2.48 7.71 -2.39 -0.02 2.47 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.32 7.13 -2.38 -0.02 1.31 16 30 H 0.06 1.40 6.68 -2.39 -0.02 1.39 16 31 H 0.09 3.16 5.34 -2.39 -0.01 3.15 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.17 6.48 -2.39 -0.02 2.15 16 34 H 0.41 14.26 4.20 -92.71 -0.39 13.88 16 35 H 0.15 5.18 8.06 -2.91 -0.02 5.15 16 36 H 0.14 5.52 8.06 -2.91 -0.02 5.50 16 37 H 0.28 12.76 8.29 -92.71 -0.77 11.99 16 38 H 0.41 15.95 4.14 -92.71 -0.38 15.56 16 39 H 0.39 12.79 8.93 -92.70 -0.83 11.96 16 Total: -1.00 -57.92 305.33 2.44 -55.48 By element: Atomic # 1 Polarization: 61.91 SS G_CDS: -0.48 Total: 61.42 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.87 Total: 13.43 kcal Atomic # 7 Polarization: -137.32 SS G_CDS: -4.92 Total: -142.25 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.42 kcal Total: -57.92 2.44 -55.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167404282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.296 kcal (2) G-P(sol) polarization free energy of solvation -57.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds