Wall clock time and date at job start Tue Mar 31 2020 00:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53004 * 109.47315 * 2 1 4 4 C 1.53001 * 109.47268 * 120.00181 * 2 1 3 5 5 C 1.53001 * 109.47090 * 294.99495 * 4 2 1 6 6 N 1.46507 * 109.46874 * 175.00061 * 4 2 1 7 7 C 1.37941 * 119.99723 * 180.02562 * 6 4 2 8 8 N 1.32620 * 120.23440 * 0.02562 * 7 6 4 9 9 C 1.32247 * 120.08187 * 179.97438 * 8 7 6 10 10 C 1.38967 * 120.57216 * 359.97438 * 9 8 7 11 11 N 1.31714 * 120.47361 * 0.02562 * 10 9 8 12 12 C 1.33906 * 119.89830 * 359.97438 * 11 10 9 13 13 C 1.40822 * 120.28150 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99960 * 173.23310 * 13 12 11 15 15 C 1.40121 * 119.99777 * 353.23410 * 13 12 11 16 16 N 1.30734 * 119.99756 * 6.15303 * 15 13 12 17 17 Si 1.86793 * 120.00114 * 186.14551 * 15 13 12 18 18 H 1.48497 * 109.47049 * 94.98569 * 17 15 13 19 19 H 1.48494 * 109.47349 * 214.98882 * 17 15 13 20 20 H 1.48504 * 109.47379 * 334.99136 * 17 15 13 21 21 C 1.50692 * 109.47230 * 55.00050 * 4 2 1 22 22 N 1.34774 * 120.00248 * 84.99850 * 21 4 2 23 23 O 1.21278 * 119.99820 * 264.99880 * 21 4 2 24 24 H 1.09010 * 109.47116 * 299.99767 * 1 2 3 25 25 H 1.09000 * 109.47553 * 59.99420 * 1 2 3 26 26 H 1.08998 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47297 * 240.00518 * 2 1 3 28 28 H 1.08995 * 109.47356 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46813 * 300.00497 * 3 2 1 30 30 H 1.09003 * 109.47253 * 60.00026 * 3 2 1 31 31 H 1.08993 * 109.47334 * 300.00354 * 5 4 2 32 32 H 1.08999 * 109.46508 * 60.00374 * 5 4 2 33 33 H 1.08999 * 109.47444 * 179.97438 * 5 4 2 34 34 H 0.96992 * 120.00326 * 359.97438 * 6 4 2 35 35 H 1.08001 * 119.71373 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.76257 * 180.28716 * 10 9 8 37 37 H 0.97005 * 119.99941 * 180.02562 * 16 15 13 38 38 H 0.97007 * 119.99723 * 0.02562 * 22 21 4 39 39 H 0.97001 * 120.00205 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6353 0.0689 2.4953 6 7 3.5000 -0.8264 1.1905 7 6 4.1888 -1.4433 2.2140 8 7 3.5340 -1.9434 3.2532 9 6 4.1973 -2.5348 4.2326 10 6 5.5822 -2.6398 4.1856 11 7 6.2549 -2.1509 3.1642 12 6 5.6023 -1.5484 2.1621 13 6 6.3134 -1.0233 1.0658 14 1 5.7790 -0.6368 0.2106 15 6 7.7143 -1.0023 1.0847 16 7 8.3636 -1.5775 2.0629 17 14 8.6543 -0.1528 -0.2879 18 1 8.9809 1.2366 0.1220 19 1 9.9102 -0.8963 -0.5618 20 1 7.8189 -0.1232 -1.5154 21 6 1.4391 -2.1018 1.3127 22 7 2.0181 -3.1200 0.6460 23 8 0.4346 -2.2966 1.9637 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.0699 1.0674 2.4494 32 1 0.5490 0.1471 2.5390 33 1 1.9982 -0.4451 3.3853 34 1 3.9823 -0.4628 0.4315 35 1 3.6580 -2.9403 5.0758 36 1 6.1104 -3.1295 4.9904 37 1 9.3334 -1.5626 2.0762 38 1 2.8218 -2.9643 0.1256 39 1 1.6311 -4.0086 0.6866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167404283.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:50 Heat of formation + Delta-G solvation = 5.924692 kcal Electronic energy + Delta-G solvation = -22916.216492 eV Core-core repulsion = 19665.721904 eV Total energy + Delta-G solvation = -3250.494588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.12113 -38.66451 -36.52514 -34.02925 -33.83515 -32.80252 -31.48693 -29.78123 -28.03290 -27.08440 -26.00884 -24.52449 -22.10487 -21.70823 -20.86127 -18.62121 -17.65839 -16.99768 -16.90591 -16.43541 -15.40298 -15.28931 -14.56413 -14.39988 -14.14928 -13.69700 -13.30160 -13.22344 -12.82731 -12.70370 -12.42966 -12.18953 -12.03575 -11.72794 -11.41972 -11.37849 -11.05988 -11.01342 -10.79405 -10.70659 -10.51809 -10.27868 -10.05566 -9.64601 -9.33570 -9.13690 -9.08172 -8.59052 -7.37470 -6.90720 -6.47536 -4.49919 2.60181 2.99926 3.01511 3.02510 3.14847 3.26716 3.83071 4.01376 4.19215 4.67945 4.91837 5.02022 5.16124 5.53025 5.61098 5.73268 5.75917 5.83081 5.85354 5.97849 5.99776 6.11145 6.13207 6.25311 6.32997 6.36006 6.43973 6.50375 6.70524 6.94634 6.99259 7.06918 7.28031 7.59532 7.83855 7.90730 8.04672 8.27185 8.56198 8.78144 8.86818 9.39795 9.94010 10.18229 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.007081 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.669513 B = 3953.322913 C = 4943.744525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.147 4.147 4 C 0.186 3.814 5 C -0.149 4.149 6 N -0.717 5.717 7 C 0.254 3.746 8 N -0.483 5.483 9 C -0.083 4.083 10 C 0.033 3.967 11 N -0.447 5.447 12 C 0.197 3.803 13 C -0.426 4.426 14 H 0.082 0.918 15 C 0.070 3.930 16 N -0.713 5.713 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.261 1.261 21 C 0.540 3.460 22 N -0.849 5.849 23 O -0.554 6.554 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.405 0.595 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.274 0.726 38 H 0.401 0.599 39 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 3.136 -6.458 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.204 4.204 4 C 0.094 3.906 5 C -0.208 4.208 6 N -0.361 5.361 7 C 0.009 3.991 8 N -0.204 5.204 9 C -0.237 4.237 10 C -0.130 4.130 11 N -0.165 5.165 12 C 0.064 3.936 13 C -0.460 4.460 14 H 0.100 0.900 15 C -0.156 4.156 16 N -0.335 5.335 17 Si 0.730 3.270 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.185 1.185 21 C 0.324 3.676 22 N -0.411 5.411 23 O -0.431 6.431 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.244 0.756 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.086 0.914 38 H 0.229 0.771 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.196 3.044 -5.690 9.665 hybrid contribution 1.041 0.039 -0.892 1.372 sum -6.155 3.083 -6.582 9.525 Atomic orbital electron populations 1.21880 0.94099 1.02454 1.01989 1.21265 0.96672 0.97008 0.96318 1.21897 1.01713 0.94927 1.01912 1.20112 0.82368 0.91457 0.96667 1.22121 1.00808 0.99183 0.98664 1.43877 1.02691 1.66231 1.23283 1.19248 0.89848 0.99573 0.90462 1.67328 1.39209 1.12239 1.01581 1.22302 0.92843 1.09322 0.99271 1.23163 0.92246 0.99643 0.97924 1.69502 1.34867 1.11436 1.00689 1.19019 0.86824 0.93780 0.94024 1.19209 0.91185 1.34218 1.01357 0.89965 1.26000 0.98300 0.94759 0.96571 1.70095 1.08714 1.27734 1.26961 0.86331 0.79451 0.79862 0.81337 1.19483 1.20110 1.18465 1.20767 0.82881 0.87303 0.76662 1.43745 1.32015 1.11598 1.53715 1.90636 1.26337 1.84745 1.41385 0.91763 0.92575 0.92372 0.90750 0.91910 0.92667 0.91848 0.92525 0.92142 0.89494 0.75639 0.86092 0.85903 0.91433 0.77079 0.77978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.52 37.15 0.32 -1.51 16 2 C -0.09 -1.22 2.31 -90.62 -0.21 -1.43 16 3 C -0.15 -1.74 8.58 37.16 0.32 -1.42 16 4 C 0.19 3.09 0.47 -132.97 -0.06 3.02 16 5 C -0.15 -2.65 7.21 37.16 0.27 -2.38 16 6 N -0.72 -13.07 4.11 -48.29 -0.20 -13.27 16 7 C 0.25 5.72 6.79 -154.82 -1.05 4.67 16 8 N -0.48 -11.21 6.73 -11.66 -0.08 -11.28 16 9 C -0.08 -1.91 11.22 -17.10 -0.19 -2.11 16 10 C 0.03 0.80 11.21 -17.33 -0.19 0.61 16 11 N -0.45 -11.83 8.06 -10.79 -0.09 -11.92 16 12 C 0.20 4.96 6.56 -84.61 -0.55 4.41 16 13 C -0.43 -10.11 8.86 -37.90 -0.34 -10.45 16 14 H 0.08 1.73 6.17 -52.49 -0.32 1.40 16 15 C 0.07 1.63 5.49 -17.31 -0.10 1.54 16 16 N -0.71 -18.00 11.51 55.56 0.64 -17.36 16 17 Si 0.91 17.14 29.57 -169.99 -5.03 12.11 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 21 C 0.54 9.86 4.32 -10.99 -0.05 9.81 16 22 N -0.85 -13.46 8.63 31.22 0.27 -13.19 16 23 O -0.55 -11.73 16.29 5.56 0.09 -11.64 16 24 H 0.06 0.82 6.57 -51.92 -0.34 0.48 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.81 6.73 -51.93 -0.35 0.46 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.78 7.18 -51.93 -0.37 0.40 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.76 6.35 -51.93 -0.33 0.43 16 31 H 0.06 0.93 6.34 -51.93 -0.33 0.60 16 32 H 0.06 1.02 6.29 -51.93 -0.33 0.69 16 33 H 0.09 1.84 5.97 -51.93 -0.31 1.53 16 34 H 0.41 6.87 5.65 -40.82 -0.23 6.64 16 35 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 36 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 37 H 0.27 6.31 8.29 -40.82 -0.34 5.97 16 38 H 0.40 6.03 8.19 -40.82 -0.33 5.70 16 39 H 0.39 5.64 8.93 -40.82 -0.36 5.27 16 LS Contribution 310.97 15.07 4.69 4.69 Total: -1.00 -29.94 310.97 -6.40 -36.34 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -4.86 Total: 20.76 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.84 Total: 4.76 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: 0.54 Total: -67.03 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.94 -6.40 -36.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167404283.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.270 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds