Wall clock time and date at job start Tue Mar 31 2020 00:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53004 * 109.47315 * 2 1 4 4 C 1.53001 * 109.47268 * 120.00181 * 2 1 3 5 5 C 1.53001 * 109.47090 * 294.99495 * 4 2 1 6 6 N 1.46507 * 109.46874 * 175.00061 * 4 2 1 7 7 C 1.37941 * 119.99723 * 180.02562 * 6 4 2 8 8 N 1.32620 * 120.23440 * 0.02562 * 7 6 4 9 9 C 1.32247 * 120.08187 * 179.97438 * 8 7 6 10 10 C 1.38967 * 120.57216 * 359.97438 * 9 8 7 11 11 N 1.31714 * 120.47361 * 0.02562 * 10 9 8 12 12 C 1.33906 * 119.89830 * 359.97438 * 11 10 9 13 13 C 1.40822 * 120.28150 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99960 * 173.23310 * 13 12 11 15 15 C 1.40121 * 119.99777 * 353.23410 * 13 12 11 16 16 N 1.30734 * 119.99756 * 6.15303 * 15 13 12 17 17 Si 1.86793 * 120.00114 * 186.14551 * 15 13 12 18 18 H 1.48497 * 109.47049 * 94.98569 * 17 15 13 19 19 H 1.48494 * 109.47349 * 214.98882 * 17 15 13 20 20 H 1.48504 * 109.47379 * 334.99136 * 17 15 13 21 21 C 1.50692 * 109.47230 * 55.00050 * 4 2 1 22 22 N 1.34774 * 120.00248 * 84.99850 * 21 4 2 23 23 O 1.21278 * 119.99820 * 264.99880 * 21 4 2 24 24 H 1.09010 * 109.47116 * 299.99767 * 1 2 3 25 25 H 1.09000 * 109.47553 * 59.99420 * 1 2 3 26 26 H 1.08998 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47297 * 240.00518 * 2 1 3 28 28 H 1.08995 * 109.47356 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46813 * 300.00497 * 3 2 1 30 30 H 1.09003 * 109.47253 * 60.00026 * 3 2 1 31 31 H 1.08993 * 109.47334 * 300.00354 * 5 4 2 32 32 H 1.08999 * 109.46508 * 60.00374 * 5 4 2 33 33 H 1.08999 * 109.47444 * 179.97438 * 5 4 2 34 34 H 0.96992 * 120.00326 * 359.97438 * 6 4 2 35 35 H 1.08001 * 119.71373 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.76257 * 180.28716 * 10 9 8 37 37 H 0.97005 * 119.99941 * 180.02562 * 16 15 13 38 38 H 0.97007 * 119.99723 * 0.02562 * 22 21 4 39 39 H 0.97001 * 120.00205 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6353 0.0689 2.4953 6 7 3.5000 -0.8264 1.1905 7 6 4.1888 -1.4433 2.2140 8 7 3.5340 -1.9434 3.2532 9 6 4.1973 -2.5348 4.2326 10 6 5.5822 -2.6398 4.1856 11 7 6.2549 -2.1509 3.1642 12 6 5.6023 -1.5484 2.1621 13 6 6.3134 -1.0233 1.0658 14 1 5.7790 -0.6368 0.2106 15 6 7.7143 -1.0023 1.0847 16 7 8.3636 -1.5775 2.0629 17 14 8.6543 -0.1528 -0.2879 18 1 8.9809 1.2366 0.1220 19 1 9.9102 -0.8963 -0.5618 20 1 7.8189 -0.1232 -1.5154 21 6 1.4391 -2.1018 1.3127 22 7 2.0181 -3.1200 0.6460 23 8 0.4346 -2.2966 1.9637 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.0699 1.0674 2.4494 32 1 0.5490 0.1471 2.5390 33 1 1.9982 -0.4451 3.3853 34 1 3.9823 -0.4628 0.4315 35 1 3.6580 -2.9403 5.0758 36 1 6.1104 -3.1295 4.9904 37 1 9.3334 -1.5626 2.0762 38 1 2.8218 -2.9643 0.1256 39 1 1.6311 -4.0086 0.6866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167404283.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:49 Heat of formation + Delta-G solvation = -15.340613 kcal Electronic energy + Delta-G solvation = -22917.138625 eV Core-core repulsion = 19665.721904 eV Total energy + Delta-G solvation = -3251.416720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.60625 -40.36203 -37.91722 -35.80411 -35.26497 -34.25509 -33.27261 -31.29389 -29.57883 -28.10478 -27.78051 -25.93272 -23.89065 -23.35287 -22.17314 -19.99800 -19.43639 -18.52519 -18.38871 -17.88416 -17.01011 -16.75884 -16.19286 -15.82582 -15.62241 -15.23164 -14.85695 -14.77355 -14.23454 -13.85976 -13.80322 -13.76654 -13.22572 -13.17505 -12.97151 -12.86022 -12.36025 -12.27863 -12.21353 -11.93669 -11.88123 -11.84721 -11.50217 -11.25930 -11.14516 -10.72356 -10.48555 -10.31765 -9.17754 -8.62633 -8.23972 -6.31495 0.82423 1.28644 1.47701 1.58975 1.60934 1.78537 2.25189 2.56045 2.82378 2.91886 3.75580 3.84220 3.99191 4.03865 4.17949 4.34263 4.36038 4.44852 4.53735 4.63513 4.81955 4.88478 4.95785 4.99310 5.01767 5.07237 5.16067 5.18400 5.24826 5.35174 5.46606 5.60922 5.81848 5.97101 6.14919 6.27695 6.54472 6.67908 6.80954 7.02716 7.47012 7.65111 8.12908 8.45914 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.007081 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.669513 B = 3953.322913 C = 4943.744525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.185 3.815 5 C -0.144 4.144 6 N -0.701 5.701 7 C 0.265 3.735 8 N -0.495 5.495 9 C -0.091 4.091 10 C 0.015 3.985 11 N -0.486 5.486 12 C 0.166 3.834 13 C -0.439 4.439 14 H 0.107 0.893 15 C 0.024 3.976 16 N -0.756 5.756 17 Si 0.984 3.016 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.241 1.241 21 C 0.535 3.465 22 N -0.839 5.839 23 O -0.588 6.588 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.413 0.587 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.278 0.722 38 H 0.406 0.594 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 4.545 -8.991 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.202 4.202 4 C 0.094 3.906 5 C -0.203 4.203 6 N -0.344 5.344 7 C 0.018 3.982 8 N -0.217 5.217 9 C -0.244 4.244 10 C -0.147 4.147 11 N -0.204 5.204 12 C 0.032 3.968 13 C -0.473 4.473 14 H 0.125 0.875 15 C -0.198 4.198 16 N -0.379 5.379 17 Si 0.805 3.195 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.164 1.164 21 C 0.319 3.681 22 N -0.401 5.401 23 O -0.467 6.467 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.253 0.747 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.236 0.764 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.565 4.435 -8.233 12.029 hybrid contribution 1.091 -0.416 -0.088 1.171 sum -6.474 4.019 -8.321 11.284 Atomic orbital electron populations 1.21855 0.93434 1.01618 1.03134 1.21307 0.97080 0.97629 0.94662 1.21893 1.01337 0.93912 1.03073 1.20259 0.80997 0.91048 0.98276 1.22043 1.01183 0.99440 0.97639 1.43846 1.03416 1.64966 1.22223 1.19352 0.89494 0.98587 0.90810 1.67462 1.39161 1.13030 1.02004 1.22597 0.92845 1.09120 0.99868 1.23419 0.92814 1.00244 0.98211 1.69448 1.36207 1.12935 1.01840 1.19503 0.88185 0.94545 0.94594 1.19700 0.91965 1.33957 1.01727 0.87533 1.26986 0.99089 0.94907 0.98858 1.70225 1.09215 1.29254 1.29217 0.85146 0.77807 0.78070 0.78502 1.19504 1.20301 1.16361 1.21049 0.82562 0.88172 0.76279 1.43673 1.31799 1.11663 1.52926 1.90620 1.27901 1.85287 1.42916 0.92385 0.89684 0.94170 0.89120 0.92443 0.90001 0.92281 0.91360 0.91535 0.93026 0.74672 0.84424 0.84452 0.91128 0.76438 0.77169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.52 71.98 0.61 -2.57 16 2 C -0.09 -2.03 2.31 -10.80 -0.02 -2.06 16 3 C -0.15 -2.91 8.58 71.98 0.62 -2.29 16 4 C 0.19 5.88 0.47 2.85 0.00 5.88 16 5 C -0.14 -5.01 7.21 71.98 0.52 -4.49 16 6 N -0.70 -24.51 4.11 -306.68 -1.26 -25.78 16 7 C 0.26 11.85 6.79 134.03 0.91 12.76 16 8 N -0.50 -23.12 6.73 -190.82 -1.28 -24.41 16 9 C -0.09 -4.26 11.22 84.81 0.95 -3.31 16 10 C 0.01 0.73 11.21 84.89 0.95 1.68 16 11 N -0.49 -26.26 8.06 -188.05 -1.52 -27.78 16 12 C 0.17 8.38 6.56 40.35 0.26 8.65 16 13 C -0.44 -20.49 8.86 23.36 0.21 -20.28 16 14 H 0.11 4.23 6.17 -2.91 -0.02 4.21 16 15 C 0.02 1.10 5.49 85.31 0.47 1.56 16 16 N -0.76 -38.59 11.51 21.86 0.25 -38.34 16 17 Si 0.98 33.95 29.57 68.60 2.03 35.98 16 18 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 19 H -0.28 -9.58 7.11 99.48 0.71 -8.88 16 20 H -0.24 -7.47 7.11 99.48 0.71 -6.76 16 21 C 0.53 19.05 4.32 87.65 0.38 19.43 16 22 N -0.84 -25.69 8.63 -173.54 -1.50 -27.19 16 23 O -0.59 -24.75 16.29 -3.02 -0.05 -24.79 16 24 H 0.06 1.36 6.57 -2.38 -0.02 1.35 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.04 6.73 -2.39 -0.02 1.03 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.22 7.18 -2.39 -0.02 1.21 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.24 6.35 -2.39 -0.02 1.23 16 31 H 0.07 2.16 6.34 -2.39 -0.02 2.14 16 32 H 0.07 2.20 6.29 -2.39 -0.02 2.18 16 33 H 0.05 2.18 5.97 -2.39 -0.01 2.16 16 34 H 0.41 13.03 5.65 -92.71 -0.52 12.50 16 35 H 0.14 5.79 8.06 -2.91 -0.02 5.77 16 36 H 0.14 6.03 8.06 -2.91 -0.02 6.00 16 37 H 0.28 12.96 8.29 -92.70 -0.77 12.19 16 38 H 0.41 11.60 8.19 -92.70 -0.76 10.84 16 39 H 0.40 11.13 8.93 -92.71 -0.83 10.30 16 Total: -1.00 -65.51 310.97 1.54 -63.98 By element: Atomic # 1 Polarization: 54.35 SS G_CDS: -0.99 Total: 53.36 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 5.86 Total: 14.96 kcal Atomic # 7 Polarization: -138.18 SS G_CDS: -5.31 Total: -143.48 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Total: -65.51 1.54 -63.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167404283.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.636 kcal (2) G-P(sol) polarization free energy of solvation -65.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds