Wall clock time and date at job start Tue Mar 31 2020 00:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47281 * 2 1 4 4 C 1.53005 * 109.47240 * 119.99582 * 2 1 3 5 5 C 1.53009 * 109.46517 * 54.99978 * 4 2 1 6 6 N 1.46498 * 109.47297 * 174.99950 * 4 2 1 7 7 C 1.38811 * 119.99837 * 179.34537 * 6 4 2 8 8 C 1.40082 * 120.75574 * 173.45282 * 7 6 4 9 9 N 1.31653 * 119.13357 * 180.02562 * 8 7 6 10 10 C 1.33594 * 120.79811 * 0.02562 * 9 8 7 11 11 C 1.41151 * 119.17577 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00049 * 359.97438 * 11 10 9 13 13 C 1.40045 * 120.00055 * 180.02562 * 11 10 9 14 14 N 1.30730 * 120.00146 * 359.72101 * 13 11 10 15 15 Si 1.86793 * 120.00049 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47544 * 89.99769 * 15 13 11 17 17 H 1.48502 * 109.47046 * 210.00161 * 15 13 11 18 18 H 1.48509 * 109.47124 * 329.99518 * 15 13 11 19 19 N 1.33605 * 121.65517 * 0.27384 * 10 9 8 20 20 C 1.31666 * 120.78724 * 359.43718 * 19 10 9 21 21 C 1.50696 * 109.47176 * 295.00345 * 4 2 1 22 22 N 1.34777 * 120.00153 * 274.99746 * 21 4 2 23 23 O 1.21288 * 119.99987 * 94.99291 * 21 4 2 24 24 H 1.08994 * 109.46842 * 300.00366 * 1 2 3 25 25 H 1.08999 * 109.46852 * 60.00456 * 1 2 3 26 26 H 1.09003 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47358 * 239.99838 * 2 1 3 28 28 H 1.08993 * 109.46981 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46735 * 300.00004 * 3 2 1 30 30 H 1.09004 * 109.47057 * 59.99654 * 3 2 1 31 31 H 1.09000 * 109.46619 * 173.87551 * 5 4 2 32 32 H 1.08993 * 109.47582 * 293.87239 * 5 4 2 33 33 H 1.08993 * 109.46893 * 53.87887 * 5 4 2 34 34 H 0.97002 * 120.00033 * 359.34863 * 6 4 2 35 35 H 1.08000 * 120.42973 * 0.02562 * 8 7 6 36 36 H 0.96995 * 120.00041 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.42857 * 180.24679 * 20 19 10 38 38 H 0.97003 * 119.99507 * 359.97438 * 22 21 4 39 39 H 0.96996 * 119.99943 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.4299 -2.1229 1.3138 6 7 3.5001 -0.8263 1.1907 7 6 4.1943 -1.4345 2.2275 8 6 5.5723 -1.6662 2.1280 9 7 6.1988 -2.2458 3.1304 10 6 5.5362 -2.6118 4.2312 11 6 6.2420 -3.2312 5.2851 12 1 7.3042 -3.4043 5.1953 13 6 5.5646 -3.6224 6.4467 14 7 4.2796 -3.4089 6.5573 15 14 6.4987 -4.4415 7.8416 16 1 6.9971 -3.4041 8.7800 17 1 5.5935 -5.3699 8.5654 18 1 7.6481 -5.2019 7.2883 19 7 4.2213 -2.4116 4.3574 20 6 3.5326 -1.8320 3.3964 21 6 1.6413 0.0571 2.4766 22 7 2.4111 1.0758 2.9081 23 8 0.6277 -0.2332 3.0760 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.8750 -2.6751 2.1414 32 1 0.3536 -2.0440 1.4668 33 1 1.6265 -2.6480 0.3791 34 1 3.9817 -0.4709 0.4273 35 1 6.1136 -1.3731 1.2406 36 1 3.8103 -3.6802 7.3617 37 1 2.4706 -1.6695 3.5061 38 1 3.2219 1.3078 2.4289 39 1 2.1542 1.5770 3.6978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167415532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:54 Heat of formation + Delta-G solvation = 13.109934 kcal Electronic energy + Delta-G solvation = -22621.147279 eV Core-core repulsion = 19370.964267 eV Total energy + Delta-G solvation = -3250.183012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56200 -38.68728 -36.62872 -34.25710 -33.31589 -33.03266 -31.75939 -29.98791 -28.77026 -27.00851 -25.50520 -23.94668 -22.98122 -21.79694 -21.12579 -19.07427 -17.82793 -17.16301 -16.72069 -16.53744 -15.43258 -15.27600 -14.86563 -14.49833 -14.21607 -13.88223 -13.50750 -13.20500 -13.09802 -12.63516 -12.53936 -12.33314 -12.04232 -11.75846 -11.53158 -11.27252 -11.20547 -11.13264 -10.93477 -10.81146 -10.57053 -10.23251 -10.20709 -9.47488 -9.37508 -9.28309 -9.12529 -8.90762 -7.26817 -6.86856 -6.41516 -4.41451 2.69724 2.86124 2.95735 3.12555 3.15956 3.19250 3.82170 3.97726 4.01997 4.62429 4.74554 4.82634 4.95142 5.24716 5.44252 5.49952 5.56996 5.73358 5.74475 5.80502 5.88476 5.91966 5.97504 6.05254 6.06612 6.15377 6.24559 6.27109 6.43354 6.59996 7.02712 7.08713 7.13709 7.33918 7.64923 8.01589 8.24520 8.41646 8.55114 8.60280 8.72137 9.19402 10.22694 10.38201 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030985 B = 0.004946 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.431772 B = 5660.105897 C = 6028.580313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.158 4.158 4 C 0.180 3.820 5 C -0.159 4.159 6 N -0.741 5.741 7 C -0.054 4.054 8 C 0.110 3.890 9 N -0.569 5.569 10 C 0.370 3.630 11 C -0.411 4.411 12 H 0.089 0.911 13 C 0.067 3.933 14 N -0.721 5.721 15 Si 0.915 3.085 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.261 1.261 19 N -0.475 5.475 20 C 0.106 3.894 21 C 0.523 3.477 22 N -0.844 5.844 23 O -0.550 6.550 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.389 0.611 35 H 0.126 0.874 36 H 0.273 0.727 37 H 0.131 0.869 38 H 0.402 0.598 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 7.925 -10.777 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.215 4.215 4 C 0.088 3.912 5 C -0.217 4.217 6 N -0.381 5.381 7 C -0.158 4.158 8 C -0.064 4.064 9 N -0.288 5.288 10 C 0.130 3.870 11 C -0.447 4.447 12 H 0.107 0.893 13 C -0.158 4.158 14 N -0.344 5.344 15 Si 0.739 3.261 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.185 1.185 19 N -0.192 5.192 20 C -0.071 4.071 21 C 0.307 3.693 22 N -0.406 5.406 23 O -0.427 6.427 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.223 0.777 35 H 0.144 0.856 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.232 0.768 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.509 7.045 -9.455 13.014 hybrid contribution 0.363 0.552 -0.308 0.729 sum -5.145 7.596 -9.763 13.398 Atomic orbital electron populations 1.21915 0.93930 1.02845 1.02104 1.21239 0.96875 0.96236 0.96449 1.22047 1.01393 0.95667 1.02440 1.20175 0.83197 0.95323 0.92460 1.22250 1.01446 0.94908 1.03124 1.43656 1.02181 1.69144 1.23082 1.19100 0.94048 1.10092 0.92581 1.22175 0.89414 0.97486 0.97363 1.68558 1.39838 1.17859 1.02550 1.19843 0.85895 0.91443 0.89844 1.19123 0.96067 1.32431 0.97109 0.89285 1.26029 0.94926 0.95261 0.99600 1.70147 1.08172 1.30689 1.25359 0.86214 0.80121 0.79460 0.80331 1.19453 1.20174 1.18481 1.69337 1.08157 1.14931 1.26777 1.22983 0.99250 0.96194 0.88701 1.21002 0.82773 0.79614 0.85934 1.43881 1.28430 1.35630 1.32707 1.90724 1.26316 1.67685 1.57966 0.91982 0.92477 0.91672 0.89680 0.92112 0.92291 0.91941 0.90829 0.90923 0.92006 0.77689 0.85639 0.91606 0.85177 0.76847 0.77526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.50 37.16 0.32 -1.29 16 2 C -0.09 -0.95 2.32 -90.61 -0.21 -1.16 16 3 C -0.16 -1.44 8.11 37.16 0.30 -1.14 16 4 C 0.18 2.57 0.48 -132.97 -0.06 2.51 16 5 C -0.16 -2.51 7.28 37.16 0.27 -2.24 16 6 N -0.74 -10.97 4.20 -46.66 -0.20 -11.16 16 7 C -0.05 -1.09 6.12 -83.32 -0.51 -1.60 16 8 C 0.11 2.37 11.21 -16.94 -0.19 2.18 16 9 N -0.57 -14.78 10.34 -12.49 -0.13 -14.91 16 10 C 0.37 10.50 7.35 -158.22 -1.16 9.33 16 11 C -0.41 -11.48 9.35 -37.80 -0.35 -11.83 16 12 H 0.09 2.40 7.85 -52.49 -0.41 1.98 16 13 C 0.07 1.76 5.50 -17.34 -0.10 1.66 16 14 N -0.72 -19.71 11.41 55.55 0.63 -19.08 16 15 Si 0.91 19.15 29.56 -169.99 -5.02 14.13 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 19 N -0.48 -13.32 7.84 -12.49 -0.10 -13.41 16 20 C 0.11 2.53 8.45 -16.93 -0.14 2.39 16 21 C 0.52 8.54 2.57 -10.99 -0.03 8.51 16 22 N -0.84 -11.75 7.24 31.22 0.23 -11.52 16 23 O -0.55 -10.86 15.86 5.55 0.09 -10.77 16 24 H 0.06 0.77 6.97 -51.93 -0.36 0.41 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.70 6.48 -51.93 -0.34 0.36 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.51 7.19 -51.93 -0.37 0.14 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.63 6.26 -51.93 -0.32 0.30 16 31 H 0.07 1.43 5.26 -51.93 -0.27 1.15 16 32 H 0.07 1.11 6.22 -51.93 -0.32 0.79 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.39 4.74 7.71 -40.82 -0.31 4.43 16 35 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.27 6.79 8.29 -40.82 -0.34 6.45 16 37 H 0.13 3.11 4.14 -52.49 -0.22 2.90 16 38 H 0.40 5.02 7.64 -40.82 -0.31 4.70 16 39 H 0.39 5.17 8.93 -40.82 -0.36 4.80 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -32.38 308.57 -6.58 -38.96 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -4.86 Total: 15.81 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -1.87 Total: 7.32 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: 0.44 Total: -70.09 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.38 -6.58 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167415532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.067 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds