Wall clock time and date at job start Tue Mar 31 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47281 * 2 1 4 4 C 1.53005 * 109.47240 * 119.99582 * 2 1 3 5 5 C 1.53009 * 109.46517 * 54.99978 * 4 2 1 6 6 N 1.46498 * 109.47297 * 174.99950 * 4 2 1 7 7 C 1.38811 * 119.99837 * 179.34537 * 6 4 2 8 8 C 1.40082 * 120.75574 * 173.45282 * 7 6 4 9 9 N 1.31653 * 119.13357 * 180.02562 * 8 7 6 10 10 C 1.33594 * 120.79811 * 0.02562 * 9 8 7 11 11 C 1.41151 * 119.17577 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00049 * 359.97438 * 11 10 9 13 13 C 1.40045 * 120.00055 * 180.02562 * 11 10 9 14 14 N 1.30730 * 120.00146 * 359.72101 * 13 11 10 15 15 Si 1.86793 * 120.00049 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47544 * 89.99769 * 15 13 11 17 17 H 1.48502 * 109.47046 * 210.00161 * 15 13 11 18 18 H 1.48509 * 109.47124 * 329.99518 * 15 13 11 19 19 N 1.33605 * 121.65517 * 0.27384 * 10 9 8 20 20 C 1.31666 * 120.78724 * 359.43718 * 19 10 9 21 21 C 1.50696 * 109.47176 * 295.00345 * 4 2 1 22 22 N 1.34777 * 120.00153 * 274.99746 * 21 4 2 23 23 O 1.21288 * 119.99987 * 94.99291 * 21 4 2 24 24 H 1.08994 * 109.46842 * 300.00366 * 1 2 3 25 25 H 1.08999 * 109.46852 * 60.00456 * 1 2 3 26 26 H 1.09003 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47358 * 239.99838 * 2 1 3 28 28 H 1.08993 * 109.46981 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46735 * 300.00004 * 3 2 1 30 30 H 1.09004 * 109.47057 * 59.99654 * 3 2 1 31 31 H 1.09000 * 109.46619 * 173.87551 * 5 4 2 32 32 H 1.08993 * 109.47582 * 293.87239 * 5 4 2 33 33 H 1.08993 * 109.46893 * 53.87887 * 5 4 2 34 34 H 0.97002 * 120.00033 * 359.34863 * 6 4 2 35 35 H 1.08000 * 120.42973 * 0.02562 * 8 7 6 36 36 H 0.96995 * 120.00041 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.42857 * 180.24679 * 20 19 10 38 38 H 0.97003 * 119.99507 * 359.97438 * 22 21 4 39 39 H 0.96996 * 119.99943 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.4299 -2.1229 1.3138 6 7 3.5001 -0.8263 1.1907 7 6 4.1943 -1.4345 2.2275 8 6 5.5723 -1.6662 2.1280 9 7 6.1988 -2.2458 3.1304 10 6 5.5362 -2.6118 4.2312 11 6 6.2420 -3.2312 5.2851 12 1 7.3042 -3.4043 5.1953 13 6 5.5646 -3.6224 6.4467 14 7 4.2796 -3.4089 6.5573 15 14 6.4987 -4.4415 7.8416 16 1 6.9971 -3.4041 8.7800 17 1 5.5935 -5.3699 8.5654 18 1 7.6481 -5.2019 7.2883 19 7 4.2213 -2.4116 4.3574 20 6 3.5326 -1.8320 3.3964 21 6 1.6413 0.0571 2.4766 22 7 2.4111 1.0758 2.9081 23 8 0.6277 -0.2332 3.0760 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.8750 -2.6751 2.1414 32 1 0.3536 -2.0440 1.4668 33 1 1.6265 -2.6480 0.3791 34 1 3.9817 -0.4709 0.4273 35 1 6.1136 -1.3731 1.2406 36 1 3.8103 -3.6802 7.3617 37 1 2.4706 -1.6695 3.5061 38 1 3.2219 1.3078 2.4289 39 1 2.1542 1.5770 3.6978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167415532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:53 Heat of formation + Delta-G solvation = -12.236697 kcal Electronic energy + Delta-G solvation = -22622.246392 eV Core-core repulsion = 19370.964267 eV Total energy + Delta-G solvation = -3251.282124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.93416 -40.47938 -37.94657 -35.83876 -34.79975 -34.45664 -33.68681 -31.39338 -30.36419 -28.12253 -27.08568 -25.31838 -24.73846 -23.34446 -22.50333 -20.32574 -19.72451 -18.68955 -18.02328 -17.89426 -17.16343 -16.67701 -16.59013 -16.00413 -15.40424 -15.31244 -14.97021 -14.58680 -14.43479 -14.22175 -13.96274 -13.43690 -13.11698 -13.06181 -12.99056 -12.90707 -12.72404 -12.50444 -12.25922 -11.98295 -11.91013 -11.87479 -11.56860 -11.21048 -11.18963 -10.94667 -10.60143 -10.52654 -9.20901 -8.57508 -8.31870 -6.36894 0.83943 1.04052 1.41321 1.52269 1.57318 1.61916 2.25001 2.54921 2.71529 2.84278 3.61540 3.80783 3.98639 4.00395 4.02665 4.12285 4.19859 4.33607 4.42246 4.55785 4.64367 4.77632 4.81356 4.83844 4.98893 4.99897 5.11144 5.15526 5.25691 5.32962 5.41017 5.42127 5.54547 5.86791 6.21425 6.32919 6.51619 6.58566 6.77870 7.06685 7.32540 7.34728 8.30531 8.49190 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030985 B = 0.004946 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.431772 B = 5660.105897 C = 6028.580313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.158 4.158 4 C 0.181 3.819 5 C -0.157 4.157 6 N -0.717 5.717 7 C -0.010 4.010 8 C 0.100 3.900 9 N -0.586 5.586 10 C 0.341 3.659 11 C -0.455 4.455 12 H 0.085 0.915 13 C 0.025 3.975 14 N -0.766 5.766 15 Si 0.994 3.006 16 H -0.261 1.261 17 H -0.268 1.268 18 H -0.256 1.256 19 N -0.513 5.513 20 C 0.082 3.918 21 C 0.517 3.483 22 N -0.834 5.834 23 O -0.590 6.590 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.411 0.589 35 H 0.174 0.826 36 H 0.277 0.723 37 H 0.125 0.875 38 H 0.411 0.589 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 8.992 -13.192 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C -0.215 4.215 4 C 0.090 3.910 5 C -0.216 4.216 6 N -0.357 5.357 7 C -0.115 4.115 8 C -0.074 4.074 9 N -0.305 5.305 10 C 0.098 3.902 11 C -0.492 4.492 12 H 0.103 0.897 13 C -0.196 4.196 14 N -0.390 5.390 15 Si 0.814 3.186 16 H -0.186 1.186 17 H -0.192 1.192 18 H -0.179 1.179 19 N -0.231 5.231 20 C -0.093 4.093 21 C 0.301 3.699 22 N -0.396 5.396 23 O -0.470 6.470 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.249 0.751 35 H 0.191 0.809 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.242 0.758 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.939 8.180 -11.961 15.310 hybrid contribution 0.063 0.367 0.186 0.416 sum -4.875 8.547 -11.776 15.346 Atomic orbital electron populations 1.21916 0.93902 1.02669 1.02254 1.21287 0.96803 0.97100 0.94824 1.22062 1.02110 0.94336 1.02987 1.20313 0.82228 0.94813 0.93687 1.22225 1.01367 0.95514 1.02493 1.43565 1.02626 1.67435 1.22112 1.18985 0.93784 1.06674 0.92081 1.22912 0.90087 0.96574 0.97786 1.68553 1.40556 1.18408 1.02974 1.20119 0.86332 0.92754 0.90992 1.19397 0.96186 1.34870 0.98729 0.89681 1.26945 0.95688 0.95263 1.01734 1.70259 1.09922 1.32424 1.26417 0.85042 0.78624 0.78424 0.76538 1.18600 1.19243 1.17930 1.69218 1.08504 1.16500 1.28836 1.23013 0.99074 0.97331 0.89856 1.21382 0.82410 0.79854 0.86233 1.43829 1.28245 1.34873 1.32643 1.90708 1.28202 1.68904 1.59232 0.94311 0.89802 0.92112 0.87164 0.90951 0.90061 0.93215 0.94910 0.90890 0.89751 0.75071 0.80879 0.91256 0.85765 0.75795 0.77104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.50 71.98 0.61 -2.19 16 2 C -0.08 -1.43 2.32 -10.79 -0.03 -1.46 16 3 C -0.16 -2.23 8.11 71.98 0.58 -1.64 16 4 C 0.18 4.79 0.48 2.86 0.00 4.79 16 5 C -0.16 -4.83 7.28 71.99 0.52 -4.31 16 6 N -0.72 -18.98 4.20 -301.54 -1.27 -20.24 16 7 C -0.01 -0.38 6.12 38.93 0.24 -0.14 16 8 C 0.10 4.12 11.21 85.17 0.95 5.08 16 9 N -0.59 -30.46 10.34 -193.42 -2.00 -32.46 16 10 C 0.34 19.94 7.35 134.95 0.99 20.94 16 11 C -0.45 -26.40 9.35 23.42 0.22 -26.18 16 12 H 0.09 4.76 7.85 -2.91 -0.02 4.74 16 13 C 0.02 1.33 5.50 85.30 0.47 1.80 16 14 N -0.77 -43.73 11.41 21.84 0.25 -43.49 16 15 Si 0.99 40.31 29.56 68.60 2.03 42.34 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 17 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 19 N -0.51 -29.84 7.84 -193.42 -1.52 -31.36 16 20 C 0.08 4.01 8.45 85.16 0.72 4.73 16 21 C 0.52 16.56 2.57 87.66 0.23 16.78 16 22 N -0.83 -22.39 7.24 -173.53 -1.26 -23.65 16 23 O -0.59 -23.81 15.86 -3.05 -0.05 -23.85 16 24 H 0.04 0.91 6.97 -2.39 -0.02 0.90 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.18 6.48 -2.39 -0.02 1.17 16 27 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.07 0.86 7.19 -2.39 -0.02 0.84 16 29 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 0.85 6.26 -2.38 -0.01 0.83 16 31 H 0.03 1.27 5.26 -2.39 -0.01 1.26 16 32 H 0.07 2.23 6.22 -2.39 -0.01 2.22 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.41 7.92 7.71 -92.71 -0.71 7.20 16 35 H 0.17 5.37 8.06 -2.91 -0.02 5.34 16 36 H 0.28 14.38 8.29 -92.71 -0.77 13.61 16 37 H 0.13 6.16 4.14 -2.91 -0.01 6.15 16 38 H 0.41 9.37 7.64 -92.71 -0.71 8.66 16 39 H 0.40 10.31 8.93 -92.71 -0.83 9.48 16 Total: -1.00 -75.49 308.57 0.58 -74.91 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -1.13 Total: 39.60 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 5.51 Total: 18.20 kcal Atomic # 7 Polarization: -145.41 SS G_CDS: -5.79 Total: -151.20 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -75.49 0.58 -74.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167415532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.672 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds