Wall clock time and date at job start Tue Mar 31 2020 00:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46910 * 2 1 4 4 C 1.53000 * 109.47072 * 119.99363 * 2 1 3 5 5 C 1.53003 * 109.47568 * 295.00485 * 4 2 1 6 6 N 1.46499 * 109.47475 * 175.00126 * 4 2 1 7 7 C 1.38800 * 120.00630 * 182.70964 * 6 4 2 8 8 C 1.40091 * 120.75330 * 6.22149 * 7 6 4 9 9 N 1.31660 * 119.13125 * 179.97438 * 8 7 6 10 10 C 1.33600 * 120.79878 * 0.02562 * 9 8 7 11 11 C 1.41143 * 119.17297 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99870 * 359.72494 * 11 10 9 13 13 C 1.40042 * 119.99744 * 179.97438 * 11 10 9 14 14 N 1.30728 * 120.00250 * 359.72777 * 13 11 10 15 15 Si 1.86799 * 119.99819 * 179.72443 * 13 11 10 16 16 H 1.48501 * 109.47391 * 60.00248 * 15 13 11 17 17 H 1.48503 * 109.47220 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47369 * 300.00053 * 15 13 11 19 19 N 1.33603 * 121.65010 * 0.25690 * 10 9 8 20 20 C 1.31656 * 120.79659 * 359.47170 * 19 10 9 21 21 C 1.50706 * 109.46849 * 55.00152 * 4 2 1 22 22 N 1.34778 * 119.99556 * 85.00393 * 21 4 2 23 23 O 1.21284 * 120.00215 * 264.99793 * 21 4 2 24 24 H 1.08997 * 109.47163 * 300.00219 * 1 2 3 25 25 H 1.08993 * 109.47118 * 60.00177 * 1 2 3 26 26 H 1.09002 * 109.46894 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47548 * 239.99409 * 2 1 3 28 28 H 1.09001 * 109.47028 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46782 * 299.99230 * 3 2 1 30 30 H 1.08997 * 109.47386 * 59.99917 * 3 2 1 31 31 H 1.09004 * 109.46458 * 293.77474 * 5 4 2 32 32 H 1.09000 * 109.47107 * 53.76901 * 5 4 2 33 33 H 1.09001 * 109.47273 * 173.77294 * 5 4 2 34 34 H 0.97004 * 119.99602 * 2.70989 * 6 4 2 35 35 H 1.07993 * 120.43333 * 0.02562 * 8 7 6 36 36 H 0.97000 * 120.00367 * 179.97438 * 14 13 11 37 37 H 1.07994 * 120.43569 * 180.27828 * 20 19 10 38 38 H 0.96997 * 120.00548 * 359.97438 * 22 21 4 39 39 H 0.97004 * 119.99685 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 0.0691 2.4954 6 7 3.5001 -0.8263 1.1908 7 6 4.1885 -1.4957 2.1930 8 6 3.4986 -2.1867 3.1975 9 7 4.1837 -2.8111 4.1324 10 6 5.5196 -2.7905 4.1306 11 6 6.2196 -3.4712 5.1497 12 1 5.6753 -3.9963 5.9206 13 6 7.6199 -3.4613 5.1642 14 7 8.2788 -2.8260 4.2308 15 14 8.5463 -4.3558 6.5174 16 1 8.1981 -5.7990 6.4851 17 1 10.0074 -4.1938 6.3075 18 1 8.1698 -3.7852 7.8357 19 7 6.2093 -2.1369 3.1913 20 6 5.5890 -1.4954 2.2234 21 6 1.4391 -2.1017 1.3129 22 7 2.0182 -3.1200 0.6464 23 8 0.4345 -2.2965 1.9638 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 2.1575 1.0258 2.5044 32 1 0.5592 0.2426 2.4819 33 1 1.9006 -0.4982 3.3875 34 1 3.9857 -0.4280 0.4515 35 1 2.4189 -2.2076 3.2044 36 1 9.2487 -2.8188 4.2410 37 1 6.1524 -0.9727 1.4646 38 1 2.8215 -2.9642 0.1255 39 1 1.6312 -4.0086 0.6869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167415533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:56 Heat of formation + Delta-G solvation = 11.738860 kcal Electronic energy + Delta-G solvation = -22438.719592 eV Core-core repulsion = 19188.477125 eV Total energy + Delta-G solvation = -3250.242466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54611 -38.67405 -36.83556 -34.35941 -33.37444 -32.84240 -31.82462 -29.64468 -28.60240 -27.30353 -25.84311 -24.26493 -22.83771 -21.64748 -21.01154 -18.89970 -17.85464 -17.20018 -16.87199 -16.54618 -15.57915 -15.41577 -14.76076 -14.54268 -14.36854 -13.92353 -13.36663 -13.25950 -12.95708 -12.70456 -12.59763 -12.36956 -12.10295 -11.79855 -11.36789 -11.28268 -11.23969 -11.20125 -10.90678 -10.77072 -10.59075 -10.24316 -10.22825 -9.49241 -9.40353 -9.34831 -9.20132 -8.89610 -7.27791 -6.87783 -6.44100 -4.42317 2.69418 2.81459 2.93580 3.10604 3.14296 3.18882 3.77764 3.96502 3.98830 4.64947 4.72065 4.79635 4.93970 5.27535 5.35914 5.47869 5.55936 5.72193 5.77681 5.78748 5.90028 5.92761 5.96912 5.97976 6.05812 6.15162 6.22034 6.27072 6.42242 6.56392 6.98099 7.05374 7.17182 7.30909 7.60297 7.99703 8.27927 8.37792 8.53053 8.55352 8.71504 9.19317 10.21264 10.36316 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035001 B = 0.004544 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.790463 B = 6160.998384 C = 6507.476034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.146 4.146 4 C 0.180 3.820 5 C -0.154 4.154 6 N -0.741 5.741 7 C -0.053 4.053 8 C 0.106 3.894 9 N -0.567 5.567 10 C 0.371 3.629 11 C -0.411 4.411 12 H 0.088 0.912 13 C 0.069 3.931 14 N -0.724 5.724 15 Si 0.915 3.085 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.265 1.265 19 N -0.477 5.477 20 C 0.110 3.890 21 C 0.521 3.479 22 N -0.844 5.844 23 O -0.552 6.552 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.390 0.610 35 H 0.131 0.869 36 H 0.272 0.728 37 H 0.126 0.874 38 H 0.403 0.597 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 5.656 -10.529 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.203 4.203 4 C 0.088 3.912 5 C -0.212 4.212 6 N -0.381 5.381 7 C -0.157 4.157 8 C -0.069 4.069 9 N -0.286 5.286 10 C 0.131 3.869 11 C -0.447 4.447 12 H 0.107 0.893 13 C -0.156 4.156 14 N -0.348 5.348 15 Si 0.739 3.261 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.189 1.189 19 N -0.193 5.193 20 C -0.067 4.067 21 C 0.305 3.695 22 N -0.405 5.405 23 O -0.429 6.429 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.225 0.775 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.232 0.768 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.589 5.208 -9.255 13.053 hybrid contribution 0.456 -0.070 -0.721 0.856 sum -7.134 5.138 -9.976 13.297 Atomic orbital electron populations 1.21919 0.93976 1.02642 1.02206 1.21205 0.96734 0.96882 0.95918 1.21877 1.01446 0.94889 1.02112 1.20165 0.82777 0.91212 0.97082 1.22234 1.01497 1.00186 0.97323 1.43677 1.02154 1.65272 1.26962 1.19103 0.93611 1.06338 0.96622 1.22521 0.98531 0.94647 0.91163 1.68593 1.09932 1.23907 1.26187 1.19821 0.84259 0.91107 0.91731 1.19095 0.90405 1.27317 1.07929 0.89349 1.26003 0.98096 0.94913 0.96610 1.70124 1.08235 1.28555 1.27839 0.86268 0.78012 0.80513 0.81288 1.18927 1.20297 1.18915 1.69298 1.37321 1.10046 1.02628 1.22667 0.88530 0.97955 0.97582 1.21057 0.83329 0.87744 0.77406 1.43790 1.31879 1.11677 1.53200 1.90723 1.25856 1.84748 1.41611 0.91636 0.92387 0.92239 0.90621 0.92121 0.92552 0.91809 0.91484 0.91364 0.91380 0.77501 0.85221 0.91648 0.85622 0.76799 0.77458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.53 37.16 0.32 -1.25 16 2 C -0.09 -0.93 2.32 -90.62 -0.21 -1.14 16 3 C -0.15 -1.34 8.58 37.16 0.32 -1.02 16 4 C 0.18 2.49 0.47 -132.97 -0.06 2.43 16 5 C -0.15 -2.32 6.96 37.16 0.26 -2.06 16 6 N -0.74 -10.89 4.26 -46.66 -0.20 -11.08 16 7 C -0.05 -1.06 6.07 -83.32 -0.51 -1.56 16 8 C 0.11 2.44 8.58 -16.93 -0.15 2.29 16 9 N -0.57 -15.32 10.34 -12.49 -0.13 -15.45 16 10 C 0.37 10.52 7.35 -158.22 -1.16 9.35 16 11 C -0.41 -11.48 9.35 -37.80 -0.35 -11.84 16 12 H 0.09 2.40 7.85 -52.49 -0.41 1.99 16 13 C 0.07 1.78 5.50 -17.35 -0.10 1.68 16 14 N -0.72 -19.16 11.41 55.55 0.63 -18.52 16 15 Si 0.92 18.96 29.56 -169.99 -5.02 13.94 16 16 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 19 N -0.48 -12.85 7.84 -12.49 -0.10 -12.94 16 20 C 0.11 2.46 11.21 -16.94 -0.19 2.27 16 21 C 0.52 8.25 2.94 -10.98 -0.03 8.22 16 22 N -0.84 -11.49 8.35 31.22 0.26 -11.23 16 23 O -0.55 -10.45 16.01 5.55 0.09 -10.36 16 24 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.72 6.73 -51.93 -0.35 0.37 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.56 7.12 -51.93 -0.37 0.19 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.61 6.49 -51.93 -0.34 0.27 16 31 H 0.07 0.93 6.73 -51.93 -0.35 0.58 16 32 H 0.07 0.96 6.22 -51.93 -0.32 0.63 16 33 H 0.07 1.25 5.53 -51.93 -0.29 0.96 16 34 H 0.39 4.83 7.60 -40.82 -0.31 4.52 16 35 H 0.13 2.92 3.91 -52.49 -0.21 2.72 16 36 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 37 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.40 4.99 8.16 -40.82 -0.33 4.65 16 39 H 0.40 4.99 8.93 -40.82 -0.36 4.63 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -31.89 309.41 -6.47 -38.36 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -4.80 Total: 15.26 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.86 Total: 7.37 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: 0.47 Total: -69.23 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.89 -6.47 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167415533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.100 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds