Wall clock time and date at job start Tue Mar 31 2020 00:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46910 * 2 1 4 4 C 1.53000 * 109.47072 * 119.99363 * 2 1 3 5 5 C 1.53003 * 109.47568 * 295.00485 * 4 2 1 6 6 N 1.46499 * 109.47475 * 175.00126 * 4 2 1 7 7 C 1.38800 * 120.00630 * 182.70964 * 6 4 2 8 8 C 1.40091 * 120.75330 * 6.22149 * 7 6 4 9 9 N 1.31660 * 119.13125 * 179.97438 * 8 7 6 10 10 C 1.33600 * 120.79878 * 0.02562 * 9 8 7 11 11 C 1.41143 * 119.17297 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99870 * 359.72494 * 11 10 9 13 13 C 1.40042 * 119.99744 * 179.97438 * 11 10 9 14 14 N 1.30728 * 120.00250 * 359.72777 * 13 11 10 15 15 Si 1.86799 * 119.99819 * 179.72443 * 13 11 10 16 16 H 1.48501 * 109.47391 * 60.00248 * 15 13 11 17 17 H 1.48503 * 109.47220 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47369 * 300.00053 * 15 13 11 19 19 N 1.33603 * 121.65010 * 0.25690 * 10 9 8 20 20 C 1.31656 * 120.79659 * 359.47170 * 19 10 9 21 21 C 1.50706 * 109.46849 * 55.00152 * 4 2 1 22 22 N 1.34778 * 119.99556 * 85.00393 * 21 4 2 23 23 O 1.21284 * 120.00215 * 264.99793 * 21 4 2 24 24 H 1.08997 * 109.47163 * 300.00219 * 1 2 3 25 25 H 1.08993 * 109.47118 * 60.00177 * 1 2 3 26 26 H 1.09002 * 109.46894 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47548 * 239.99409 * 2 1 3 28 28 H 1.09001 * 109.47028 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46782 * 299.99230 * 3 2 1 30 30 H 1.08997 * 109.47386 * 59.99917 * 3 2 1 31 31 H 1.09004 * 109.46458 * 293.77474 * 5 4 2 32 32 H 1.09000 * 109.47107 * 53.76901 * 5 4 2 33 33 H 1.09001 * 109.47273 * 173.77294 * 5 4 2 34 34 H 0.97004 * 119.99602 * 2.70989 * 6 4 2 35 35 H 1.07993 * 120.43333 * 0.02562 * 8 7 6 36 36 H 0.97000 * 120.00367 * 179.97438 * 14 13 11 37 37 H 1.07994 * 120.43569 * 180.27828 * 20 19 10 38 38 H 0.96997 * 120.00548 * 359.97438 * 22 21 4 39 39 H 0.97004 * 119.99685 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 0.0691 2.4954 6 7 3.5001 -0.8263 1.1908 7 6 4.1885 -1.4957 2.1930 8 6 3.4986 -2.1867 3.1975 9 7 4.1837 -2.8111 4.1324 10 6 5.5196 -2.7905 4.1306 11 6 6.2196 -3.4712 5.1497 12 1 5.6753 -3.9963 5.9206 13 6 7.6199 -3.4613 5.1642 14 7 8.2788 -2.8260 4.2308 15 14 8.5463 -4.3558 6.5174 16 1 8.1981 -5.7990 6.4851 17 1 10.0074 -4.1938 6.3075 18 1 8.1698 -3.7852 7.8357 19 7 6.2093 -2.1369 3.1913 20 6 5.5890 -1.4954 2.2234 21 6 1.4391 -2.1017 1.3129 22 7 2.0182 -3.1200 0.6464 23 8 0.4345 -2.2965 1.9638 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 2.1575 1.0258 2.5044 32 1 0.5592 0.2426 2.4819 33 1 1.9006 -0.4982 3.3875 34 1 3.9857 -0.4280 0.4515 35 1 2.4189 -2.2076 3.2044 36 1 9.2487 -2.8188 4.2410 37 1 6.1524 -0.9727 1.4646 38 1 2.8215 -2.9642 0.1255 39 1 1.6312 -4.0086 0.6869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167415533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:56 Heat of formation + Delta-G solvation = -13.152128 kcal Electronic energy + Delta-G solvation = -22439.798946 eV Core-core repulsion = 19188.477125 eV Total energy + Delta-G solvation = -3251.321821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90669 -40.45608 -38.09080 -35.89721 -34.91302 -34.26513 -33.72111 -31.13356 -30.14148 -28.14499 -27.51341 -25.66580 -24.61531 -23.31831 -22.25356 -20.11535 -19.71972 -18.56166 -18.26983 -17.87820 -17.34405 -16.82715 -16.26443 -16.11882 -15.70171 -15.28514 -15.00680 -14.49907 -14.31180 -14.07257 -13.85931 -13.70357 -13.25565 -13.16098 -12.92413 -12.77878 -12.55659 -12.43317 -12.28655 -11.99904 -11.93941 -11.86781 -11.47395 -11.25635 -11.16127 -11.00923 -10.60395 -10.56679 -9.21595 -8.57816 -8.32619 -6.36438 0.86330 1.00653 1.42762 1.54918 1.55131 1.58100 2.26538 2.54019 2.68625 2.84402 3.64311 3.76980 3.94563 3.98623 4.00156 4.14764 4.27900 4.32768 4.35168 4.51370 4.62855 4.77930 4.83763 4.87145 4.94853 5.05675 5.12799 5.16341 5.20434 5.32616 5.41695 5.50550 5.56016 5.85413 6.19916 6.34371 6.51192 6.57614 6.76994 7.03804 7.31717 7.32756 8.29863 8.48919 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035001 B = 0.004544 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.790463 B = 6160.998384 C = 6507.476034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.145 4.145 4 C 0.180 3.820 5 C -0.152 4.152 6 N -0.718 5.718 7 C -0.006 4.006 8 C 0.087 3.913 9 N -0.599 5.599 10 C 0.343 3.657 11 C -0.458 4.458 12 H 0.077 0.923 13 C 0.030 3.970 14 N -0.757 5.757 15 Si 0.991 3.009 16 H -0.262 1.262 17 H -0.261 1.261 18 H -0.263 1.263 19 N -0.502 5.502 20 C 0.094 3.906 21 C 0.514 3.486 22 N -0.835 5.835 23 O -0.587 6.587 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.410 0.590 35 H 0.134 0.866 36 H 0.280 0.720 37 H 0.162 0.838 38 H 0.411 0.589 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 6.917 -12.543 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.202 4.202 4 C 0.089 3.911 5 C -0.211 4.211 6 N -0.359 5.359 7 C -0.112 4.112 8 C -0.086 4.086 9 N -0.319 5.319 10 C 0.101 3.899 11 C -0.495 4.495 12 H 0.095 0.905 13 C -0.192 4.192 14 N -0.381 5.381 15 Si 0.811 3.189 16 H -0.187 1.187 17 H -0.185 1.185 18 H -0.188 1.188 19 N -0.219 5.219 20 C -0.082 4.082 21 C 0.298 3.702 22 N -0.396 5.396 23 O -0.467 6.467 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.248 0.752 35 H 0.151 0.849 36 H 0.091 0.909 37 H 0.180 0.820 38 H 0.241 0.759 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.355 6.510 -11.363 15.020 hybrid contribution 0.157 -0.350 -0.283 0.477 sum -7.198 6.160 -11.646 15.013 Atomic orbital electron populations 1.21912 0.93795 1.01675 1.03213 1.21237 0.96748 0.97644 0.94293 1.21887 1.01610 0.93635 1.03049 1.20317 0.81531 0.90551 0.98723 1.22218 1.02447 1.00310 0.96126 1.43617 1.02766 1.63647 1.25829 1.18958 0.93087 1.03416 0.95747 1.22664 0.98660 0.95478 0.91802 1.68533 1.09982 1.25432 1.27978 1.20073 0.84766 0.92331 0.92765 1.19323 0.91978 1.29438 1.08768 0.90516 1.26810 0.97971 0.95371 0.99002 1.70173 1.08857 1.29637 1.29465 0.85142 0.77092 0.78930 0.77725 1.18653 1.18504 1.18791 1.69223 1.38356 1.10797 1.03491 1.23248 0.89654 0.97792 0.97535 1.21399 0.83067 0.88695 0.77029 1.43750 1.31782 1.11670 1.52420 1.90711 1.27529 1.85310 1.43153 0.92287 0.89771 0.94176 0.88696 0.91813 0.90290 0.92341 0.90077 0.90440 0.95102 0.75193 0.84922 0.90881 0.82046 0.75878 0.76879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.53 71.98 0.61 -2.08 16 2 C -0.08 -1.40 2.32 -10.79 -0.03 -1.42 16 3 C -0.14 -2.04 8.58 71.98 0.62 -1.42 16 4 C 0.18 4.61 0.47 2.86 0.00 4.62 16 5 C -0.15 -4.43 6.96 71.98 0.50 -3.92 16 6 N -0.72 -19.15 4.26 -301.54 -1.28 -20.43 16 7 C -0.01 -0.25 6.07 38.94 0.24 -0.02 16 8 C 0.09 4.05 8.58 85.17 0.73 4.78 16 9 N -0.60 -33.55 10.34 -193.42 -2.00 -35.55 16 10 C 0.34 20.13 7.35 134.95 0.99 21.12 16 11 C -0.46 -26.69 9.35 23.42 0.22 -26.47 16 12 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 13 C 0.03 1.59 5.50 85.29 0.47 2.06 16 14 N -0.76 -40.61 11.41 21.84 0.25 -40.36 16 15 Si 0.99 39.48 29.56 68.60 2.03 41.51 16 16 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 N -0.50 -27.40 7.84 -193.43 -1.52 -28.92 16 20 C 0.09 4.10 11.21 85.17 0.95 5.05 16 21 C 0.51 15.74 2.94 87.66 0.26 15.99 16 22 N -0.83 -21.62 8.35 -173.52 -1.45 -23.07 16 23 O -0.59 -22.24 16.01 -3.04 -0.05 -22.29 16 24 H 0.06 1.15 6.44 -2.39 -0.02 1.13 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 0.89 6.73 -2.39 -0.02 0.88 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 0.87 7.12 -2.39 -0.02 0.86 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.91 6.49 -2.39 -0.02 0.89 16 31 H 0.08 2.09 6.73 -2.39 -0.02 2.08 16 32 H 0.08 2.10 6.22 -2.39 -0.01 2.09 16 33 H 0.03 1.12 5.53 -2.39 -0.01 1.11 16 34 H 0.41 8.39 7.60 -92.71 -0.70 7.69 16 35 H 0.13 6.10 3.91 -2.91 -0.01 6.09 16 36 H 0.28 13.49 8.29 -92.71 -0.77 12.72 16 37 H 0.16 5.74 8.06 -2.91 -0.02 5.72 16 38 H 0.41 9.25 8.16 -92.71 -0.76 8.50 16 39 H 0.40 9.79 8.93 -92.71 -0.83 8.97 16 Total: -1.00 -72.84 309.41 0.39 -72.46 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -1.16 Total: 38.37 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 5.57 Total: 18.28 kcal Atomic # 7 Polarization: -142.33 SS G_CDS: -6.00 Total: -148.33 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -72.84 0.39 -72.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167415533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.305 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds