Wall clock time and date at job start Tue Mar 31 2020 00:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46823 * 2 1 4 4 H 1.08997 * 109.47097 * 54.63645 * 3 2 1 5 5 N 1.46894 * 109.46732 * 174.63522 * 3 2 1 6 6 C 1.46901 * 111.00332 * 273.97542 * 5 3 2 7 7 C 1.52995 * 109.47539 * 174.31756 * 6 5 3 8 8 H 1.09000 * 109.47422 * 305.00100 * 7 6 5 9 9 C 1.47201 * 109.47094 * 65.00067 * 7 6 5 10 10 N 6.10441 * 145.42032 * 11.14486 * 2 1 3 11 11 C 1.53006 * 109.47174 * 184.99770 * 7 6 5 12 12 C 1.50701 * 109.46987 * 174.99752 * 11 7 6 13 13 H 1.08002 * 119.99909 * 0.02562 * 12 11 7 14 14 C 1.37878 * 119.99935 * 179.97438 * 12 11 7 15 15 N 1.31511 * 119.99635 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00014 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47113 * 60.00490 * 16 14 12 18 18 H 1.48502 * 109.47045 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47069 * 300.00448 * 16 14 12 20 20 C 1.50695 * 109.46963 * 294.63324 * 3 2 1 21 21 N 1.29950 * 126.28992 * 284.68912 * 20 3 2 22 22 O 1.21303 * 110.25132 * 179.84819 * 21 20 3 23 23 C 1.33637 * 109.81107 * 0.42437 * 22 21 20 24 24 C 1.50706 * 126.55323 * 179.72038 * 23 22 21 25 25 N 1.31131 * 106.89948 * 359.74011 * 23 22 21 26 26 H 1.08995 * 109.47083 * 176.34687 * 1 2 3 27 27 H 1.08995 * 109.46901 * 56.34700 * 1 2 3 28 28 H 1.09000 * 109.46768 * 296.34738 * 1 2 3 29 29 H 1.08997 * 109.47186 * 119.99520 * 2 1 3 30 30 H 1.08998 * 109.47262 * 240.00389 * 2 1 3 31 31 H 1.00906 * 111.00192 * 150.02100 * 5 3 2 32 32 H 1.09003 * 109.47055 * 294.32304 * 6 5 3 33 33 H 1.08997 * 109.46979 * 54.31543 * 6 5 3 34 34 H 1.08991 * 109.47377 * 295.00224 * 11 7 6 35 35 H 1.09000 * 109.46475 * 55.00556 * 11 7 6 36 36 H 0.97007 * 119.99771 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.46841 * 270.02334 * 24 23 22 38 38 H 1.09001 * 109.46727 * 30.02627 * 24 23 22 39 39 H 1.09001 * 109.47321 * 150.02172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6003 1.9834 0.8380 5 7 3.5032 1.4446 0.1295 6 6 3.9070 1.3929 1.5410 7 6 5.4279 1.2537 1.6317 8 1 5.7483 0.3854 1.0560 9 6 6.0647 2.4647 1.0887 10 7 6.5560 3.3992 0.6697 11 6 5.8372 1.0748 3.0951 12 6 7.3196 0.8151 3.1738 13 1 7.9107 0.7816 2.2705 14 6 7.9215 0.6215 4.3991 15 7 7.2017 0.6629 5.4990 16 14 9.7590 0.3004 4.4968 17 1 10.4943 1.4514 3.9140 18 1 10.1563 0.1266 5.9171 19 1 10.0871 -0.9326 3.7370 20 6 1.6491 2.1135 -1.2915 21 7 2.1996 1.9252 -2.4534 22 8 1.6552 2.6118 -3.2922 23 6 0.6821 3.3319 -2.7262 24 6 -0.2276 4.3132 -3.4195 25 7 0.6701 3.0217 -1.4522 26 1 -0.3633 -1.0255 -0.0655 27 1 -0.3633 0.5695 -0.8554 28 1 -0.3633 0.4561 0.9209 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.9061 2.2460 -0.3327 32 1 3.5954 2.3096 2.0418 33 1 3.4344 0.5371 2.0229 34 1 5.5967 1.9797 3.6529 35 1 5.2972 0.2300 3.5226 36 1 7.6251 0.5263 6.3611 37 1 0.2232 5.3053 -3.3964 38 1 -0.3737 4.0044 -4.4546 39 1 -1.1903 4.3396 -2.9089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169111080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:27 Heat of formation + Delta-G solvation = 76.630991 kcal Electronic energy + Delta-G solvation = -20983.759404 eV Core-core repulsion = 17736.330872 eV Total energy + Delta-G solvation = -3247.428532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.76299 -38.26482 -36.58136 -35.43940 -34.06269 -33.24737 -32.71403 -31.11202 -29.14022 -27.45795 -25.48070 -23.91993 -23.06644 -22.70532 -21.80411 -20.14548 -18.34602 -17.79433 -16.73315 -16.56427 -15.97527 -15.30772 -14.88467 -14.76193 -14.44245 -13.81535 -13.76633 -13.57164 -13.30989 -13.06245 -12.74909 -12.55940 -12.31377 -12.07198 -11.96152 -11.72959 -11.67022 -11.40920 -11.24067 -11.23236 -11.05594 -10.81847 -10.73377 -10.57100 -10.27283 -10.04285 -9.55830 -9.25674 -8.51405 -8.44835 -6.09689 -4.12822 0.99077 2.03499 2.63636 3.29496 3.31791 3.35679 3.39769 3.56630 3.61924 3.81238 4.15554 4.41755 4.66173 4.78465 4.84748 4.87294 4.90284 5.06239 5.24239 5.28291 5.28610 5.37553 5.47626 5.53228 5.62570 5.69679 5.79677 5.90112 6.02168 6.06961 6.21015 6.32876 6.51732 6.91124 7.23665 7.42140 7.51909 7.85254 8.04282 8.22695 8.39673 8.91378 9.52613 11.01168 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.003407 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.861366 B = 8217.167717 C = 8795.696862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.179 3.821 4 H 0.077 0.923 5 N -0.680 5.680 6 C 0.066 3.934 7 C 0.009 3.991 8 H 0.113 0.887 9 C 0.241 3.759 10 N -0.477 5.477 11 C 0.033 3.967 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.170 3.830 21 N -0.359 5.359 22 O 0.077 5.923 23 C 0.169 3.831 24 C -0.060 4.060 25 N -0.479 5.479 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.342 0.658 32 H 0.039 0.961 33 H 0.097 0.903 34 H 0.024 0.976 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.773 2.165 -14.632 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C 0.068 3.932 4 H 0.095 0.905 5 N -0.312 5.312 6 C -0.064 4.064 7 C -0.013 4.013 8 H 0.131 0.869 9 C -0.076 4.076 10 N -0.154 5.154 11 C -0.005 4.005 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.104 4.104 21 N -0.065 5.065 22 O 0.017 5.983 23 C -0.052 4.052 24 C -0.119 4.119 25 N -0.213 5.213 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.424 2.352 -14.862 23.022 hybrid contribution 0.684 0.537 0.499 1.003 sum -16.740 2.889 -14.362 22.245 Atomic orbital electron populations 1.21764 0.95541 1.01690 1.01845 1.21563 0.95163 0.93969 1.04148 1.19908 0.89436 0.95731 0.88138 0.90482 1.60638 1.06022 1.48799 1.15767 1.22204 0.95181 1.02039 0.86937 1.19316 0.90893 0.89555 1.01528 0.86946 1.29310 0.92657 0.94219 0.91383 1.81028 1.09829 1.12617 1.11877 1.19162 0.97144 0.98533 0.85692 1.21105 0.92983 1.49636 0.92812 0.92536 1.24946 0.98222 0.95041 0.95719 1.69927 1.35823 1.49460 0.97830 0.86647 0.85428 0.78968 0.77002 1.20276 1.21179 1.19991 1.25856 0.92029 0.95953 0.96535 1.74719 1.18288 1.13457 1.00015 1.85339 1.37036 1.40744 1.35218 1.28839 0.91970 0.95959 0.88424 1.20371 0.96393 0.94638 1.00467 1.71897 1.20518 1.14216 1.14708 0.92242 0.93460 0.92297 0.89702 0.90862 0.83918 0.94251 0.88515 0.95715 0.94117 0.92730 0.88123 0.88486 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.79 37.16 0.36 -1.11 16 2 C -0.11 -1.23 5.64 -26.72 -0.15 -1.38 16 3 C 0.18 2.29 2.63 -68.87 -0.18 2.11 16 4 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 5 N -0.68 -9.81 6.24 -107.96 -0.67 -10.48 16 6 C 0.07 0.99 4.88 -3.83 -0.02 0.97 16 7 C 0.01 0.17 2.42 -93.41 -0.23 -0.06 16 8 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 9 C 0.24 5.04 13.08 -20.76 -0.27 4.77 16 10 N -0.48 -10.77 18.54 42.15 0.78 -9.99 16 11 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 12 C -0.53 -14.13 8.60 -34.44 -0.30 -14.43 16 13 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.17 2.27 5.64 -156.37 -0.88 1.39 16 21 N -0.36 -5.04 12.15 30.90 0.38 -4.66 16 22 O 0.08 0.90 11.31 18.12 0.20 1.11 16 23 C 0.17 1.61 8.51 -13.05 -0.11 1.50 16 24 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 25 N -0.48 -5.85 11.53 -9.86 -0.11 -5.96 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.50 7.26 -51.93 -0.38 0.13 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.91 7.36 -51.93 -0.38 0.52 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.34 5.43 7.57 -39.29 -0.30 5.13 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.29 7.33 -51.93 -0.38 0.91 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -32.16 340.18 -5.81 -37.96 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.61 Total: -0.90 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.62 Total: -3.82 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 1.11 Total: -55.93 kcal Atomic # 8 Polarization: 0.90 SS G_CDS: 0.20 Total: 1.11 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.16 -5.81 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169111080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.592 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds