Wall clock time and date at job start Tue Mar 31 2020 00:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46823 * 2 1 4 4 H 1.08997 * 109.47097 * 54.63645 * 3 2 1 5 5 N 1.46894 * 109.46732 * 174.63522 * 3 2 1 6 6 C 1.46901 * 111.00332 * 273.97542 * 5 3 2 7 7 C 1.52995 * 109.47539 * 174.31756 * 6 5 3 8 8 H 1.09000 * 109.47422 * 305.00100 * 7 6 5 9 9 C 1.47201 * 109.47094 * 65.00067 * 7 6 5 10 10 N 6.10441 * 145.42032 * 11.14486 * 2 1 3 11 11 C 1.53006 * 109.47174 * 184.99770 * 7 6 5 12 12 C 1.50701 * 109.46987 * 174.99752 * 11 7 6 13 13 H 1.08002 * 119.99909 * 0.02562 * 12 11 7 14 14 C 1.37878 * 119.99935 * 179.97438 * 12 11 7 15 15 N 1.31511 * 119.99635 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00014 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47113 * 60.00490 * 16 14 12 18 18 H 1.48502 * 109.47045 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47069 * 300.00448 * 16 14 12 20 20 C 1.50695 * 109.46963 * 294.63324 * 3 2 1 21 21 N 1.29950 * 126.28992 * 284.68912 * 20 3 2 22 22 O 1.21303 * 110.25132 * 179.84819 * 21 20 3 23 23 C 1.33637 * 109.81107 * 0.42437 * 22 21 20 24 24 C 1.50706 * 126.55323 * 179.72038 * 23 22 21 25 25 N 1.31131 * 106.89948 * 359.74011 * 23 22 21 26 26 H 1.08995 * 109.47083 * 176.34687 * 1 2 3 27 27 H 1.08995 * 109.46901 * 56.34700 * 1 2 3 28 28 H 1.09000 * 109.46768 * 296.34738 * 1 2 3 29 29 H 1.08997 * 109.47186 * 119.99520 * 2 1 3 30 30 H 1.08998 * 109.47262 * 240.00389 * 2 1 3 31 31 H 1.00906 * 111.00192 * 150.02100 * 5 3 2 32 32 H 1.09003 * 109.47055 * 294.32304 * 6 5 3 33 33 H 1.08997 * 109.46979 * 54.31543 * 6 5 3 34 34 H 1.08991 * 109.47377 * 295.00224 * 11 7 6 35 35 H 1.09000 * 109.46475 * 55.00556 * 11 7 6 36 36 H 0.97007 * 119.99771 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.46841 * 270.02334 * 24 23 22 38 38 H 1.09001 * 109.46727 * 30.02627 * 24 23 22 39 39 H 1.09001 * 109.47321 * 150.02172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6003 1.9834 0.8380 5 7 3.5032 1.4446 0.1295 6 6 3.9070 1.3929 1.5410 7 6 5.4279 1.2537 1.6317 8 1 5.7483 0.3854 1.0560 9 6 6.0647 2.4647 1.0887 10 7 6.5560 3.3992 0.6697 11 6 5.8372 1.0748 3.0951 12 6 7.3196 0.8151 3.1738 13 1 7.9107 0.7816 2.2705 14 6 7.9215 0.6215 4.3991 15 7 7.2017 0.6629 5.4990 16 14 9.7590 0.3004 4.4968 17 1 10.4943 1.4514 3.9140 18 1 10.1563 0.1266 5.9171 19 1 10.0871 -0.9326 3.7370 20 6 1.6491 2.1135 -1.2915 21 7 2.1996 1.9252 -2.4534 22 8 1.6552 2.6118 -3.2922 23 6 0.6821 3.3319 -2.7262 24 6 -0.2276 4.3132 -3.4195 25 7 0.6701 3.0217 -1.4522 26 1 -0.3633 -1.0255 -0.0655 27 1 -0.3633 0.5695 -0.8554 28 1 -0.3633 0.4561 0.9209 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.9061 2.2460 -0.3327 32 1 3.5954 2.3096 2.0418 33 1 3.4344 0.5371 2.0229 34 1 5.5967 1.9797 3.6529 35 1 5.2972 0.2300 3.5226 36 1 7.6251 0.5263 6.3611 37 1 0.2232 5.3053 -3.3964 38 1 -0.3737 4.0044 -4.4546 39 1 -1.1903 4.3396 -2.9089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169111080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:25 Heat of formation + Delta-G solvation = 53.527734 kcal Electronic energy + Delta-G solvation = -20984.761236 eV Core-core repulsion = 17736.330872 eV Total energy + Delta-G solvation = -3248.430365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -46.65995 -39.46205 -37.96674 -36.47513 -35.66808 -34.58884 -33.78894 -32.59126 -29.75463 -28.89940 -26.92163 -24.82622 -24.25663 -23.81452 -23.51379 -21.04341 -19.24889 -18.84465 -18.40252 -18.26849 -17.15971 -16.69351 -16.18671 -15.76339 -15.54304 -15.02608 -14.80696 -14.47665 -14.29182 -14.18165 -14.15594 -13.92290 -13.74830 -13.27899 -13.09295 -12.97784 -12.84966 -12.70604 -12.59254 -12.54388 -12.38368 -12.18616 -12.12841 -11.97760 -11.72601 -11.43966 -11.21327 -10.86672 -10.55349 -9.64625 -8.20154 -6.28169 0.18059 1.13382 1.40641 1.41755 1.49092 1.87889 1.91396 1.95540 2.39440 2.46063 2.82202 3.14321 3.20757 3.24658 3.79911 3.93618 4.14334 4.21954 4.33169 4.44153 4.44302 4.55939 4.61621 4.64454 4.66333 4.83097 4.89421 4.91024 4.99696 5.12005 5.13261 5.18575 5.35465 5.46196 5.60886 5.76411 5.80683 6.01703 6.19640 6.70008 6.85547 7.18730 7.40155 8.90504 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.003407 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.861366 B = 8217.167717 C = 8795.696862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.179 3.821 4 H 0.081 0.919 5 N -0.681 5.681 6 C 0.077 3.923 7 C 0.021 3.979 8 H 0.124 0.876 9 C 0.251 3.749 10 N -0.508 5.508 11 C 0.040 3.960 12 C -0.542 4.542 13 H 0.052 0.948 14 C 0.013 3.987 15 N -0.922 5.922 16 Si 0.947 3.053 17 H -0.282 1.282 18 H -0.281 1.281 19 H -0.264 1.264 20 C 0.160 3.840 21 N -0.389 5.389 22 O 0.072 5.928 23 C 0.182 3.818 24 C -0.060 4.060 25 N -0.504 5.504 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.333 0.667 32 H 0.039 0.961 33 H 0.118 0.882 34 H 0.002 0.998 35 H 0.041 0.959 36 H 0.265 0.735 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 1.988 -15.469 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.068 3.932 4 H 0.099 0.901 5 N -0.312 5.312 6 C -0.053 4.053 7 C -0.001 4.001 8 H 0.141 0.859 9 C -0.065 4.065 10 N -0.185 5.185 11 C 0.002 3.998 12 C -0.580 4.580 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.561 5.561 16 Si 0.773 3.227 17 H -0.208 1.208 18 H -0.206 1.206 19 H -0.188 1.188 20 C -0.113 4.113 21 N -0.097 5.097 22 O 0.012 5.988 23 C -0.038 4.038 24 C -0.118 4.118 25 N -0.239 5.239 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.058 0.942 33 H 0.137 0.863 34 H 0.020 0.980 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.513 2.174 -15.714 24.380 hybrid contribution 0.952 0.654 0.696 1.348 sum -17.561 2.828 -15.017 23.279 Atomic orbital electron populations 1.21706 0.94341 1.02411 1.01673 1.21541 0.96135 0.92803 1.03894 1.19984 0.88141 0.96776 0.88303 0.90095 1.60619 1.07360 1.48282 1.14934 1.22077 0.92423 1.03071 0.87689 1.19243 0.93291 0.88971 0.98617 0.85855 1.29746 0.91888 0.94205 0.90691 1.81022 1.10961 1.13692 1.12869 1.18980 0.95381 0.97281 0.88195 1.21519 0.94922 1.48925 0.92610 0.92975 1.25684 1.02093 0.95174 0.95654 1.70016 1.37338 1.50563 0.98218 0.85770 0.80810 0.78876 0.77250 1.20816 1.20576 1.18818 1.25958 0.92442 0.96330 0.96551 1.74693 1.19577 1.14869 1.00525 1.85293 1.37630 1.40980 1.34865 1.29922 0.90944 0.94994 0.87920 1.20761 0.95676 0.93841 1.01500 1.71903 1.20951 1.14853 1.16172 0.90929 0.94535 0.91630 0.88885 0.92068 0.85017 0.94237 0.86345 0.97969 0.94029 0.92650 0.86413 0.85879 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.79 71.98 0.70 -1.89 16 2 C -0.10 -2.23 5.64 30.60 0.17 -2.06 16 3 C 0.18 4.42 2.63 44.17 0.12 4.54 16 4 H 0.08 1.93 7.84 -2.39 -0.02 1.91 16 5 N -0.68 -19.12 6.24 -495.47 -3.09 -22.21 16 6 C 0.08 2.22 4.88 86.30 0.42 2.64 16 7 C 0.02 0.75 2.42 -12.60 -0.03 0.72 16 8 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 9 C 0.25 10.44 13.08 89.44 1.17 11.61 16 10 N -0.51 -23.00 18.54 20.01 0.37 -22.63 16 11 C 0.04 1.86 4.42 29.85 0.13 1.99 16 12 C -0.54 -28.93 8.60 25.60 0.22 -28.71 16 13 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 14 C 0.01 0.72 5.46 84.66 0.46 1.18 16 15 N -0.92 -52.88 13.29 21.45 0.28 -52.60 16 16 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 C 0.16 4.22 5.64 138.46 0.78 5.01 16 21 N -0.39 -10.85 12.15 -60.30 -0.73 -11.58 16 22 O 0.07 1.63 11.31 74.88 0.85 2.48 16 23 C 0.18 3.22 8.51 88.38 0.75 3.97 16 24 C -0.06 -0.31 10.51 71.24 0.75 0.44 16 25 N -0.50 -11.87 11.53 -303.18 -3.49 -15.37 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.74 7.26 -2.39 -0.02 0.72 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.81 7.36 -2.39 -0.02 1.79 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.33 10.48 7.57 -89.69 -0.68 9.80 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.12 2.92 7.33 -2.39 -0.02 2.91 16 34 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.26 14.45 8.31 -92.70 -0.77 13.67 16 37 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -69.01 340.18 2.24 -66.77 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.38 Total: 9.91 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.65 Total: -0.55 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.67 Total: -124.39 kcal Atomic # 8 Polarization: 1.63 SS G_CDS: 0.85 Total: 2.48 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.01 2.24 -66.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169111080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.296 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds