Wall clock time and date at job start Tue Mar 31 2020 00:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46952 * 2 1 4 4 H 1.09009 * 109.47001 * 305.55730 * 3 2 1 5 5 N 1.46906 * 109.47001 * 185.56257 * 3 2 1 6 6 C 1.46893 * 111.00072 * 86.40829 * 5 3 2 7 7 C 1.52998 * 109.47309 * 174.46667 * 6 5 3 8 8 H 1.09004 * 109.47345 * 305.00419 * 7 6 5 9 9 C 1.47199 * 109.46796 * 64.99976 * 7 6 5 10 10 N 5.09380 * 171.41834 * 226.58756 * 2 1 3 11 11 C 1.52998 * 109.47685 * 185.00094 * 7 6 5 12 12 C 1.50694 * 109.47283 * 175.00051 * 11 7 6 13 13 H 1.08001 * 120.00226 * 0.02562 * 12 11 7 14 14 C 1.37878 * 119.99906 * 179.72558 * 12 11 7 15 15 N 1.31515 * 120.00230 * 0.27188 * 14 12 11 16 16 Si 1.86805 * 120.00072 * 180.27785 * 14 12 11 17 17 H 1.48499 * 109.47193 * 89.99859 * 16 14 12 18 18 H 1.48497 * 109.47192 * 209.99921 * 16 14 12 19 19 H 1.48498 * 109.46875 * 329.99756 * 16 14 12 20 20 C 1.50692 * 109.47366 * 65.56029 * 3 2 1 21 21 N 1.29945 * 126.29071 * 75.02180 * 20 3 2 22 22 O 1.21300 * 110.25718 * 179.97438 * 21 20 3 23 23 C 1.33645 * 109.80608 * 0.02562 * 22 21 20 24 24 C 1.50705 * 126.54574 * 179.97438 * 23 22 21 25 25 N 1.31123 * 106.89916 * 359.76579 * 23 22 21 26 26 H 1.09002 * 109.47137 * 294.70427 * 1 2 3 27 27 H 1.08999 * 109.47491 * 54.70586 * 1 2 3 28 28 H 1.09007 * 109.46928 * 174.70257 * 1 2 3 29 29 H 1.08996 * 109.46969 * 239.99958 * 2 1 3 30 30 H 1.08999 * 109.46847 * 120.00052 * 2 1 3 31 31 H 1.00897 * 110.99534 * 322.45064 * 5 3 2 32 32 H 1.09008 * 109.47169 * 54.47178 * 6 5 3 33 33 H 1.09000 * 109.47616 * 294.46799 * 6 5 3 34 34 H 1.09005 * 109.46874 * 54.99984 * 11 7 6 35 35 H 1.08999 * 109.46844 * 295.00475 * 11 7 6 36 36 H 0.96999 * 120.00086 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.47377 * 359.97085 * 24 23 22 38 38 H 1.08999 * 109.47276 * 119.97849 * 24 23 22 39 39 H 1.09007 * 109.46619 * 239.97618 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9842 -0.8361 5 7 3.5029 1.4447 -0.1343 6 6 3.9019 1.4038 -1.5474 7 6 5.4216 1.5463 -1.6526 8 1 5.7380 2.4534 -1.1376 9 6 6.0679 0.3787 -1.0315 10 7 6.5668 -0.5224 -0.5521 11 6 5.8254 1.6290 -3.1260 12 6 7.3058 1.8921 -3.2271 13 1 7.8994 1.9901 -2.3302 14 6 7.9035 2.0016 -4.4647 15 7 7.1809 1.8818 -5.5570 16 14 9.7400 2.3201 -4.5901 17 1 10.4654 1.0249 -4.6301 18 1 10.0260 3.0861 -5.8297 19 1 10.1883 3.1024 -3.4103 20 6 1.6532 2.1120 1.2934 21 7 2.2040 1.9186 2.4543 22 8 1.6658 2.6081 3.2947 23 6 0.6905 3.3285 2.7326 24 6 -0.2175 4.3083 3.4302 25 7 0.6776 3.0232 1.4575 26 1 -0.3633 0.4295 0.9336 27 1 -0.3634 0.5937 -0.8387 28 1 -0.3633 -1.0233 -0.0949 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9142 0.6802 0.3800 32 1 3.4223 2.2224 -2.0842 33 1 3.5950 0.4536 -1.9843 34 1 5.2786 2.4397 -3.6076 35 1 5.5891 0.6870 -3.6209 36 1 7.6015 1.9585 -6.4276 37 1 0.0378 4.3500 4.4890 38 1 -0.0941 5.2967 2.9875 39 1 -1.2531 3.9869 3.3185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169111083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:29 Heat of formation + Delta-G solvation = 74.929404 kcal Electronic energy + Delta-G solvation = -20969.811441 eV Core-core repulsion = 17722.309123 eV Total energy + Delta-G solvation = -3247.502319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.62882 -38.33520 -36.55040 -35.41640 -34.05164 -33.23073 -32.66230 -31.04828 -29.05374 -27.44765 -25.49754 -23.77349 -23.02258 -22.72963 -21.84268 -20.41004 -18.23648 -17.71346 -16.72539 -16.54670 -15.81270 -15.31692 -14.98263 -14.74913 -14.33262 -13.98334 -13.74688 -13.43124 -13.22495 -12.95961 -12.81948 -12.51993 -12.20372 -12.17698 -12.06102 -11.73737 -11.70883 -11.45126 -11.28360 -11.14409 -11.04308 -10.95529 -10.78396 -10.54648 -10.28711 -9.93848 -9.56137 -9.25681 -8.50760 -8.45469 -6.10221 -4.13263 1.10727 2.17579 2.74224 3.29882 3.36050 3.36612 3.40634 3.56547 3.63239 4.00329 4.22952 4.41946 4.62546 4.70763 4.79259 4.88531 4.94519 4.99911 5.13110 5.27046 5.28021 5.42390 5.44185 5.55273 5.61252 5.66283 5.77172 5.84675 5.92479 6.06390 6.07612 6.31018 6.51416 6.89563 7.27690 7.41940 7.51334 7.84938 8.16173 8.22299 8.39752 8.91181 9.52267 11.00658 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.003382 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.177498 B = 8276.057897 C = 8512.477761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.152 4.152 3 C 0.177 3.823 4 H 0.112 0.888 5 N -0.685 5.685 6 C 0.069 3.931 7 C 0.008 3.992 8 H 0.111 0.889 9 C 0.241 3.759 10 N -0.475 5.475 11 C 0.033 3.967 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.195 3.805 21 N -0.370 5.370 22 O 0.073 5.927 23 C 0.167 3.833 24 C -0.059 4.059 25 N -0.479 5.479 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.347 0.653 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.784 3.662 14.420 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.192 4.192 3 C 0.065 3.935 4 H 0.130 0.870 5 N -0.316 5.316 6 C -0.061 4.061 7 C -0.014 4.014 8 H 0.129 0.871 9 C -0.076 4.076 10 N -0.152 5.152 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.079 4.079 21 N -0.077 5.077 22 O 0.014 5.986 23 C -0.054 4.054 24 C -0.117 4.117 25 N -0.214 5.214 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.167 0.833 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.412 2.471 14.703 22.923 hybrid contribution 0.717 -0.290 -0.473 0.907 sum -16.695 2.181 14.230 22.045 Atomic orbital electron populations 1.21676 0.94726 1.01822 1.02030 1.22281 0.97498 0.95985 1.03391 1.19816 0.89501 0.94103 0.90111 0.86981 1.60363 1.05930 1.52162 1.13102 1.22166 0.95165 1.01810 0.86948 1.19314 0.90872 0.90691 1.00481 0.87135 1.29282 0.92722 0.94079 0.91520 1.81035 1.09755 1.12371 1.12016 1.19165 0.97197 0.98707 0.85493 1.21140 0.93091 1.49766 0.92468 0.92499 1.24949 0.98209 0.95002 0.95790 1.69935 1.35694 1.49763 0.97632 0.86589 0.85459 0.78385 0.77641 1.20679 1.21068 1.19707 1.25630 0.91052 0.95355 0.95905 1.74615 1.18462 1.14335 1.00278 1.85319 1.37094 1.40842 1.35300 1.28783 0.91826 0.96195 0.88560 1.20338 0.96137 0.94968 1.00285 1.71830 1.20793 1.14278 1.14454 0.93259 0.91929 0.92422 0.90085 0.91360 0.83329 0.88680 0.94050 0.94153 0.95663 0.92786 0.88704 0.87967 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.65 37.16 0.36 -1.04 16 2 C -0.15 -1.67 5.37 -26.73 -0.14 -1.81 16 3 C 0.18 2.21 2.60 -68.87 -0.18 2.03 16 4 H 0.11 1.32 7.69 -51.92 -0.40 0.92 16 5 N -0.68 -9.73 6.18 -107.95 -0.67 -10.40 16 6 C 0.07 1.01 4.94 -3.83 -0.02 0.99 16 7 C 0.01 0.16 2.42 -93.41 -0.23 -0.07 16 8 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 9 C 0.24 4.95 13.07 -20.76 -0.27 4.68 16 10 N -0.47 -10.54 18.54 42.15 0.78 -9.76 16 11 C 0.03 0.76 4.42 -27.89 -0.12 0.64 16 12 C -0.53 -14.11 8.60 -34.44 -0.30 -14.40 16 13 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.19 2.61 6.16 -156.37 -0.96 1.64 16 21 N -0.37 -5.25 12.15 30.90 0.38 -4.87 16 22 O 0.07 0.87 11.31 18.10 0.20 1.08 16 23 C 0.17 1.61 8.51 -13.06 -0.11 1.50 16 24 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 25 N -0.48 -5.85 11.55 -9.87 -0.11 -5.97 16 26 H 0.05 0.51 7.57 -51.93 -0.39 0.12 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.87 7.54 -51.93 -0.39 0.48 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.35 5.22 7.69 -39.29 -0.30 4.92 16 32 H 0.09 1.29 7.92 -51.92 -0.41 0.88 16 33 H 0.04 0.59 7.57 -51.93 -0.39 0.19 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -32.22 340.74 -5.89 -38.11 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.63 Total: -0.91 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.69 Total: -4.06 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 1.11 Total: -55.81 kcal Atomic # 8 Polarization: 0.87 SS G_CDS: 0.20 Total: 1.08 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.22 -5.89 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169111083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.041 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds