Wall clock time and date at job start Tue Mar 31 2020 00:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46952 * 2 1 4 4 H 1.09009 * 109.47001 * 305.55730 * 3 2 1 5 5 N 1.46906 * 109.47001 * 185.56257 * 3 2 1 6 6 C 1.46893 * 111.00072 * 86.40829 * 5 3 2 7 7 C 1.52998 * 109.47309 * 174.46667 * 6 5 3 8 8 H 1.09004 * 109.47345 * 305.00419 * 7 6 5 9 9 C 1.47199 * 109.46796 * 64.99976 * 7 6 5 10 10 N 5.09380 * 171.41834 * 226.58756 * 2 1 3 11 11 C 1.52998 * 109.47685 * 185.00094 * 7 6 5 12 12 C 1.50694 * 109.47283 * 175.00051 * 11 7 6 13 13 H 1.08001 * 120.00226 * 0.02562 * 12 11 7 14 14 C 1.37878 * 119.99906 * 179.72558 * 12 11 7 15 15 N 1.31515 * 120.00230 * 0.27188 * 14 12 11 16 16 Si 1.86805 * 120.00072 * 180.27785 * 14 12 11 17 17 H 1.48499 * 109.47193 * 89.99859 * 16 14 12 18 18 H 1.48497 * 109.47192 * 209.99921 * 16 14 12 19 19 H 1.48498 * 109.46875 * 329.99756 * 16 14 12 20 20 C 1.50692 * 109.47366 * 65.56029 * 3 2 1 21 21 N 1.29945 * 126.29071 * 75.02180 * 20 3 2 22 22 O 1.21300 * 110.25718 * 179.97438 * 21 20 3 23 23 C 1.33645 * 109.80608 * 0.02562 * 22 21 20 24 24 C 1.50705 * 126.54574 * 179.97438 * 23 22 21 25 25 N 1.31123 * 106.89916 * 359.76579 * 23 22 21 26 26 H 1.09002 * 109.47137 * 294.70427 * 1 2 3 27 27 H 1.08999 * 109.47491 * 54.70586 * 1 2 3 28 28 H 1.09007 * 109.46928 * 174.70257 * 1 2 3 29 29 H 1.08996 * 109.46969 * 239.99958 * 2 1 3 30 30 H 1.08999 * 109.46847 * 120.00052 * 2 1 3 31 31 H 1.00897 * 110.99534 * 322.45064 * 5 3 2 32 32 H 1.09008 * 109.47169 * 54.47178 * 6 5 3 33 33 H 1.09000 * 109.47616 * 294.46799 * 6 5 3 34 34 H 1.09005 * 109.46874 * 54.99984 * 11 7 6 35 35 H 1.08999 * 109.46844 * 295.00475 * 11 7 6 36 36 H 0.96999 * 120.00086 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.47377 * 359.97085 * 24 23 22 38 38 H 1.08999 * 109.47276 * 119.97849 * 24 23 22 39 39 H 1.09007 * 109.46619 * 239.97618 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9842 -0.8361 5 7 3.5029 1.4447 -0.1343 6 6 3.9019 1.4038 -1.5474 7 6 5.4216 1.5463 -1.6526 8 1 5.7380 2.4534 -1.1376 9 6 6.0679 0.3787 -1.0315 10 7 6.5668 -0.5224 -0.5521 11 6 5.8254 1.6290 -3.1260 12 6 7.3058 1.8921 -3.2271 13 1 7.8994 1.9901 -2.3302 14 6 7.9035 2.0016 -4.4647 15 7 7.1809 1.8818 -5.5570 16 14 9.7400 2.3201 -4.5901 17 1 10.4654 1.0249 -4.6301 18 1 10.0260 3.0861 -5.8297 19 1 10.1883 3.1024 -3.4103 20 6 1.6532 2.1120 1.2934 21 7 2.2040 1.9186 2.4543 22 8 1.6658 2.6081 3.2947 23 6 0.6905 3.3285 2.7326 24 6 -0.2175 4.3083 3.4302 25 7 0.6776 3.0232 1.4575 26 1 -0.3633 0.4295 0.9336 27 1 -0.3634 0.5937 -0.8387 28 1 -0.3633 -1.0233 -0.0949 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9142 0.6802 0.3800 32 1 3.4223 2.2224 -2.0842 33 1 3.5950 0.4536 -1.9843 34 1 5.2786 2.4397 -3.6076 35 1 5.5891 0.6870 -3.6209 36 1 7.6015 1.9585 -6.4276 37 1 0.0378 4.3500 4.4890 38 1 -0.0941 5.2967 2.9875 39 1 -1.2531 3.9869 3.3185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169111083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:29 Heat of formation + Delta-G solvation = 51.964775 kcal Electronic energy + Delta-G solvation = -20970.807262 eV Core-core repulsion = 17722.309123 eV Total energy + Delta-G solvation = -3248.498140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.52796 -39.50676 -37.94332 -36.42867 -35.66686 -34.55274 -33.75935 -32.49242 -29.67222 -28.87198 -26.93037 -24.70358 -24.18453 -23.79734 -23.57491 -21.30210 -19.14285 -18.79760 -18.38502 -18.22346 -16.96371 -16.71730 -16.14950 -15.89186 -15.47088 -14.97169 -14.79244 -14.46866 -14.39865 -14.11583 -13.98942 -13.87468 -13.58158 -13.23698 -13.21569 -13.05739 -12.87374 -12.70885 -12.60654 -12.50979 -12.36439 -12.24754 -12.06711 -12.01685 -11.85300 -11.42707 -11.20887 -10.77517 -10.56288 -9.60541 -8.20656 -6.28566 0.29670 1.26955 1.38848 1.40996 1.50312 1.90566 1.94122 2.06200 2.39783 2.51374 3.06637 3.14145 3.21523 3.31786 3.73992 3.84045 4.11708 4.17121 4.24466 4.38961 4.43606 4.63871 4.67080 4.69171 4.70268 4.78687 4.89171 4.90243 4.97516 5.01953 5.10298 5.19468 5.25848 5.45936 5.60740 5.76164 5.80687 6.10355 6.19644 6.72196 6.85604 7.30469 7.39801 8.90154 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.003382 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.177498 B = 8276.057897 C = 8512.477761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.146 4.146 3 C 0.178 3.822 4 H 0.120 0.880 5 N -0.690 5.690 6 C 0.080 3.920 7 C 0.020 3.980 8 H 0.117 0.883 9 C 0.251 3.749 10 N -0.504 5.504 11 C 0.040 3.960 12 C -0.541 4.541 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.921 5.921 16 Si 0.947 3.053 17 H -0.283 1.283 18 H -0.277 1.277 19 H -0.266 1.266 20 C 0.185 3.815 21 N -0.401 5.401 22 O 0.066 5.934 23 C 0.180 3.820 24 C -0.059 4.059 25 N -0.503 5.503 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.341 0.659 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.005 0.995 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.894 4.665 15.165 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.186 4.186 3 C 0.066 3.934 4 H 0.138 0.862 5 N -0.320 5.320 6 C -0.049 4.049 7 C -0.002 4.002 8 H 0.135 0.865 9 C -0.065 4.065 10 N -0.181 5.181 11 C 0.001 3.999 12 C -0.579 4.579 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.561 5.561 16 Si 0.773 3.227 17 H -0.210 1.210 18 H -0.202 1.202 19 H -0.191 1.191 20 C -0.089 4.089 21 N -0.111 5.111 22 O 0.008 5.992 23 C -0.040 4.040 24 C -0.116 4.116 25 N -0.237 5.237 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.542 3.491 15.465 24.396 hybrid contribution 0.998 -0.552 -0.642 1.309 sum -17.543 2.938 14.823 23.154 Atomic orbital electron populations 1.21622 0.93536 1.02604 1.01824 1.22219 0.98463 0.94937 1.02975 1.19879 0.88218 0.95005 0.90287 0.86180 1.60292 1.07350 1.52007 1.12361 1.22021 0.92227 1.02948 0.87751 1.19214 0.93423 0.90156 0.97397 0.86492 1.29649 0.91990 0.93965 0.90920 1.81033 1.10797 1.13373 1.12939 1.18979 0.95363 0.97369 0.88159 1.21544 0.95042 1.49073 0.92233 0.93040 1.25683 1.02054 0.95137 0.95746 1.70018 1.37217 1.50856 0.98022 0.85719 0.80910 0.78104 0.78011 1.20974 1.20218 1.19059 1.25784 0.91426 0.95689 0.95958 1.74597 1.19845 1.15770 1.00840 1.85274 1.37739 1.41130 1.35008 1.29876 0.90796 0.95212 0.88104 1.20725 0.95766 0.93933 1.01215 1.71839 1.21171 1.14872 1.15856 0.94157 0.91196 0.91309 0.89681 0.92517 0.84021 0.87013 0.93319 0.94292 0.97668 0.92654 0.86354 0.86600 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.65 71.98 0.69 -1.79 16 2 C -0.15 -3.10 5.37 30.59 0.16 -2.93 16 3 C 0.18 4.27 2.60 44.16 0.12 4.39 16 4 H 0.12 2.66 7.69 -2.38 -0.02 2.64 16 5 N -0.69 -19.04 6.18 -495.46 -3.06 -22.10 16 6 C 0.08 2.26 4.94 86.30 0.43 2.69 16 7 C 0.02 0.73 2.42 -12.60 -0.03 0.70 16 8 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 9 C 0.25 10.26 13.07 89.44 1.17 11.43 16 10 N -0.50 -22.36 18.54 20.01 0.37 -21.98 16 11 C 0.04 1.85 4.42 29.85 0.13 1.98 16 12 C -0.54 -28.91 8.60 25.60 0.22 -28.69 16 13 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 14 C 0.01 0.71 5.46 84.65 0.46 1.17 16 15 N -0.92 -52.83 13.29 21.45 0.28 -52.55 16 16 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 C 0.19 4.84 6.16 138.46 0.85 5.70 16 21 N -0.40 -11.28 12.15 -60.31 -0.73 -12.01 16 22 O 0.07 1.52 11.31 74.81 0.85 2.37 16 23 C 0.18 3.19 8.51 88.38 0.75 3.94 16 24 C -0.06 -0.30 10.51 71.24 0.75 0.45 16 25 N -0.50 -11.69 11.55 -303.18 -3.50 -15.19 16 26 H 0.04 0.79 7.57 -2.39 -0.02 0.78 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.08 1.72 7.54 -2.39 -0.02 1.70 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.34 10.17 7.69 -89.70 -0.69 9.48 16 32 H 0.11 2.82 7.92 -2.38 -0.02 2.80 16 33 H 0.05 1.32 7.57 -2.39 -0.02 1.30 16 34 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 Total: -1.00 -68.92 340.74 2.31 -66.61 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.37 Total: 10.00 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.71 Total: -0.96 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -6.64 Total: -123.84 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.85 Total: 2.37 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.92 2.31 -66.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169111083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.570 kcal (2) G-P(sol) polarization free energy of solvation -68.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds