Wall clock time and date at job start Tue Mar 31 2020 00:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47348 * 2 1 4 4 H 1.08999 * 109.46869 * 54.74518 * 3 2 1 5 5 N 1.46904 * 109.46737 * 294.75109 * 3 2 1 6 6 C 1.46907 * 110.99799 * 153.66720 * 5 3 2 7 7 C 1.53000 * 109.46724 * 176.15544 * 6 5 3 8 8 H 1.08996 * 109.47351 * 55.00063 * 7 6 5 9 9 C 1.47204 * 109.46962 * 294.99789 * 7 6 5 10 10 N 5.85060 * 107.19201 * 313.65309 * 2 1 3 11 11 C 1.53002 * 109.46927 * 175.00226 * 7 6 5 12 12 C 1.50695 * 109.47013 * 184.99462 * 11 7 6 13 13 H 1.07998 * 120.00149 * 0.02562 * 12 11 7 14 14 C 1.37885 * 119.99695 * 179.97438 * 12 11 7 15 15 N 1.31518 * 119.99677 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00281 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47027 * 89.99338 * 16 14 12 18 18 H 1.48499 * 109.47398 * 209.99899 * 16 14 12 19 19 H 1.48508 * 109.46804 * 329.99843 * 16 14 12 20 20 C 1.50694 * 109.47500 * 174.74939 * 3 2 1 21 21 N 1.29948 * 126.28879 * 75.02276 * 20 3 2 22 22 O 1.21301 * 110.25205 * 179.97438 * 21 20 3 23 23 C 1.33642 * 109.80966 * 0.02562 * 22 21 20 24 24 C 1.50701 * 126.54853 * 179.97438 * 23 22 21 25 25 N 1.31131 * 106.89864 * 359.76679 * 23 22 21 26 26 H 1.08993 * 109.47580 * 66.16517 * 1 2 3 27 27 H 1.08995 * 109.47252 * 186.17027 * 1 2 3 28 28 H 1.09005 * 109.47359 * 306.16387 * 1 2 3 29 29 H 1.09003 * 109.47206 * 240.00079 * 2 1 3 30 30 H 1.09002 * 109.47415 * 119.99752 * 2 1 3 31 31 H 1.00906 * 111.00168 * 29.71621 * 5 3 2 32 32 H 1.08995 * 109.46689 * 56.15864 * 6 5 3 33 33 H 1.09000 * 109.47316 * 296.15320 * 6 5 3 34 34 H 1.09000 * 109.47214 * 304.99927 * 11 7 6 35 35 H 1.09006 * 109.47210 * 64.99598 * 11 7 6 36 36 H 0.96999 * 119.99564 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46922 * 359.97383 * 24 23 22 38 38 H 1.08998 * 109.46924 * 119.97034 * 24 23 22 39 39 H 1.08999 * 109.47299 * 239.97394 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6019 1.9828 0.8392 5 7 1.6565 2.0974 -1.2578 6 6 1.5463 3.5517 -1.0818 7 6 1.2403 4.2068 -2.4302 8 1 0.3482 3.7523 -2.8609 9 6 2.3799 4.0100 -3.3411 10 7 3.2592 3.8582 -4.0440 11 6 1.0024 5.7045 -2.2273 12 6 0.5813 6.3277 -3.5331 13 1 0.4919 5.7166 -4.4191 14 6 0.3092 7.6779 -3.5965 15 7 -0.0588 8.2217 -4.7361 16 14 0.4632 8.7348 -2.0640 17 1 1.8450 9.2704 -1.9689 18 1 -0.5005 9.8620 -2.1411 19 1 0.1675 7.9120 -0.8636 20 6 3.5413 1.4446 0.1300 21 7 4.3945 1.1441 -0.8030 22 8 5.5282 1.2426 -0.3828 23 6 5.5051 1.6264 0.8971 24 6 6.6997 1.8628 1.7848 25 7 4.2445 1.7622 1.2316 26 1 -0.3634 0.4152 -0.9399 27 1 -0.3633 -1.0217 0.1105 28 1 -0.3634 0.6064 0.8297 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.7975 1.7108 -1.6196 32 1 2.4863 3.9429 -0.6928 33 1 0.7423 3.7729 -0.3797 34 1 0.2175 5.8505 -1.4851 35 1 1.9225 6.1749 -1.8802 36 1 -0.2506 9.1715 -4.7806 37 1 7.6137 1.6715 1.2225 38 1 6.6959 2.8962 2.1314 39 1 6.6536 1.1917 2.6424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169111084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:32 Heat of formation + Delta-G solvation = 80.836534 kcal Electronic energy + Delta-G solvation = -21305.401788 eV Core-core repulsion = 18058.155622 eV Total energy + Delta-G solvation = -3247.246166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.56773 -38.34797 -36.46221 -35.43787 -33.98901 -33.23256 -32.67996 -31.05718 -29.01772 -27.80204 -26.13818 -23.69358 -22.99475 -22.42726 -21.50546 -20.35388 -18.13665 -17.55491 -17.14679 -16.86087 -15.72815 -15.44345 -14.95570 -14.62725 -14.41813 -13.79084 -13.69996 -13.52684 -13.34284 -13.12354 -12.96350 -12.50051 -12.18206 -12.11084 -12.08955 -11.88097 -11.79846 -11.38724 -11.29999 -11.23380 -11.13008 -10.97612 -10.80709 -10.31520 -10.01175 -9.88679 -9.71549 -9.33672 -8.63028 -8.57796 -6.11111 -4.11759 1.17745 2.20188 2.80695 3.26243 3.33786 3.34041 3.40797 3.72676 3.82034 3.97426 4.21901 4.37665 4.62129 4.71730 4.80241 4.88127 4.96524 4.99095 5.13298 5.23672 5.25173 5.40245 5.44073 5.44482 5.58762 5.67278 5.73517 5.79258 5.84657 5.96394 5.99711 6.18029 6.26981 6.82777 6.92755 7.09118 7.29578 7.62653 8.23829 8.40371 8.58382 8.92653 9.48636 11.01996 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.004431 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.531697 B = 6317.967559 C = 6883.908902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.180 3.820 4 H 0.079 0.921 5 N -0.683 5.683 6 C 0.064 3.936 7 C 0.022 3.978 8 H 0.106 0.894 9 C 0.249 3.751 10 N -0.466 5.466 11 C -0.004 4.004 12 C -0.528 4.528 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.263 1.263 20 C 0.177 3.823 21 N -0.348 5.348 22 O 0.076 5.924 23 C 0.165 3.835 24 C -0.059 4.059 25 N -0.485 5.485 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.355 0.645 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.019 0.981 36 H 0.265 0.735 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 -16.046 17.349 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C 0.068 3.932 4 H 0.097 0.903 5 N -0.318 5.318 6 C -0.066 4.066 7 C 0.000 4.000 8 H 0.124 0.876 9 C -0.069 4.069 10 N -0.143 5.143 11 C -0.043 4.043 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.188 1.188 20 C -0.097 4.097 21 N -0.053 5.053 22 O 0.015 5.985 23 C -0.056 4.056 24 C -0.117 4.117 25 N -0.220 5.220 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.277 -16.222 15.395 23.519 hybrid contribution -0.878 0.995 1.423 1.946 sum 6.399 -15.227 16.819 23.573 Atomic orbital electron populations 1.21825 0.94475 1.02543 1.02418 1.21689 0.96658 0.94283 1.03415 1.19640 0.83798 0.96409 0.93319 0.90285 1.60196 1.40488 1.04460 1.26650 1.22175 1.01597 0.86200 0.96590 1.18920 0.91317 1.00107 0.89623 0.87585 1.28665 0.93808 0.91173 0.93223 1.80994 1.11960 1.10745 1.10553 1.19637 0.97418 0.88159 0.99124 1.21018 1.46601 0.94263 0.94654 0.90725 1.24985 0.94320 0.97849 0.95895 1.69908 1.46071 1.12335 1.25134 0.86825 0.78269 0.80426 0.84066 1.20265 1.21196 1.18774 1.25723 0.99779 0.99709 0.84538 1.74726 0.89354 1.19587 1.21649 1.85368 1.25332 1.62090 1.25691 1.28769 0.95956 0.95790 0.85070 1.20334 0.90086 1.04865 0.96444 1.71810 1.01541 1.21105 1.27506 0.91925 0.91858 0.92227 0.90381 0.91055 0.82251 0.91053 0.92648 0.94472 0.96235 0.92554 0.88652 0.88040 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.63 37.16 0.36 -0.81 16 2 C -0.12 -1.16 5.49 -26.73 -0.15 -1.31 16 3 C 0.18 2.16 2.58 -68.86 -0.18 1.98 16 4 H 0.08 0.89 7.83 -51.93 -0.41 0.48 16 5 N -0.68 -9.09 5.97 -107.95 -0.64 -9.73 16 6 C 0.06 0.94 4.81 -3.82 -0.02 0.93 16 7 C 0.02 0.41 2.39 -93.40 -0.22 0.19 16 8 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 9 C 0.25 5.44 13.67 -20.76 -0.28 5.15 16 10 N -0.47 -11.25 18.54 42.15 0.78 -10.46 16 11 C 0.00 -0.10 3.49 -27.88 -0.10 -0.19 16 12 C -0.53 -14.40 9.15 -34.44 -0.32 -14.72 16 13 H 0.07 2.24 7.84 -52.49 -0.41 1.83 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 16 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 20 C 0.18 2.52 6.84 -156.38 -1.07 1.46 16 21 N -0.35 -5.54 12.15 30.90 0.38 -5.17 16 22 O 0.08 1.05 11.31 18.10 0.20 1.25 16 23 C 0.16 1.83 8.51 -13.06 -0.11 1.72 16 24 C -0.06 -0.32 10.51 36.01 0.38 0.06 16 25 N -0.48 -6.45 11.55 -9.87 -0.11 -6.57 16 26 H 0.06 0.46 6.65 -51.93 -0.35 0.12 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.36 4.00 6.61 -39.29 -0.26 3.74 16 32 H 0.07 1.16 7.99 -51.93 -0.41 0.75 16 33 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.04 0.76 7.20 -51.93 -0.37 0.38 16 35 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -35.22 337.52 -5.59 -40.81 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.58 Total: -1.33 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.80 Total: -3.61 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 1.17 Total: -58.42 kcal Atomic # 8 Polarization: 1.05 SS G_CDS: 0.20 Total: 1.25 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.22 -5.59 -40.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169111084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.647 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds