Wall clock time and date at job start Tue Mar 31 2020 00:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46825 * 2 1 4 4 H 1.09003 * 109.47362 * 54.59542 * 3 2 1 5 5 N 1.46897 * 109.47025 * 174.59614 * 3 2 1 6 6 C 1.46901 * 111.00272 * 273.66690 * 5 3 2 7 7 C 1.52995 * 109.47539 * 185.35412 * 6 5 3 8 8 H 1.09002 * 109.47257 * 55.00328 * 7 6 5 9 9 C 1.47198 * 109.47299 * 295.00259 * 7 6 5 10 10 N 5.08911 * 171.45734 * 134.69477 * 2 1 3 11 11 C 1.53002 * 109.47160 * 174.99760 * 7 6 5 12 12 C 1.50703 * 109.47185 * 185.00026 * 11 7 6 13 13 H 1.08005 * 119.99719 * 0.02562 * 12 11 7 14 14 C 1.37871 * 120.00049 * 180.02562 * 12 11 7 15 15 N 1.31522 * 120.00090 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00108 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46758 * 60.00360 * 16 14 12 18 18 H 1.48497 * 109.47078 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47369 * 300.00337 * 16 14 12 20 20 C 1.50699 * 109.47405 * 294.59370 * 3 2 1 21 21 N 1.29949 * 126.28765 * 284.69484 * 20 3 2 22 22 O 1.21297 * 110.25240 * 179.83735 * 21 20 3 23 23 C 1.33646 * 109.81311 * 0.42622 * 22 21 20 24 24 C 1.50695 * 126.55614 * 179.71821 * 23 22 21 25 25 N 1.31130 * 106.89145 * 359.73305 * 23 22 21 26 26 H 1.08998 * 109.46651 * 181.34599 * 1 2 3 27 27 H 1.08994 * 109.47078 * 61.34800 * 1 2 3 28 28 H 1.09001 * 109.47282 * 301.34712 * 1 2 3 29 29 H 1.08994 * 109.47349 * 119.99680 * 2 1 3 30 30 H 1.08998 * 109.47214 * 240.00042 * 2 1 3 31 31 H 1.00899 * 111.00815 * 37.62295 * 5 3 2 32 32 H 1.09003 * 109.47055 * 305.35960 * 6 5 3 33 33 H 1.08997 * 109.46979 * 65.35199 * 6 5 3 34 34 H 1.08998 * 109.47439 * 305.00136 * 11 7 6 35 35 H 1.09004 * 109.46767 * 65.00285 * 11 7 6 36 36 H 0.97001 * 119.99972 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47167 * 270.02567 * 24 23 22 38 38 H 1.08999 * 109.46863 * 30.01997 * 24 23 22 39 39 H 1.08994 * 109.47492 * 150.02147 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 0.8376 5 7 3.5031 1.4446 0.1304 6 6 3.9059 1.4007 1.5425 7 6 5.4263 1.5386 1.6437 8 1 5.7439 2.4456 1.1293 9 6 6.0677 0.3701 1.0193 10 7 6.5627 -0.5317 0.5374 11 6 5.8342 1.6182 3.1162 12 6 7.3156 1.8770 3.2138 13 1 7.9069 1.9753 2.3154 14 6 7.9160 1.9882 4.4499 15 7 7.1960 1.8680 5.5440 16 14 9.7524 2.3082 4.5709 17 1 10.0765 3.5917 3.8979 18 1 10.1485 2.3844 6.0001 19 1 10.4922 1.2026 3.9110 20 6 1.6499 2.1133 -1.2919 21 7 2.2012 1.9246 -2.4534 22 8 1.6574 2.6110 -3.2928 23 6 0.6837 3.3312 -2.7276 24 6 -0.2254 4.3123 -3.4217 25 7 0.6710 3.0213 -1.4535 26 1 -0.3632 -1.0274 0.0241 27 1 -0.3633 0.4927 -0.9018 28 1 -0.3634 0.5346 0.8777 29 1 1.8934 -0.5137 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.9135 0.6814 -0.3865 32 1 3.4300 2.2197 2.0817 33 1 3.5974 0.4507 1.9788 34 1 5.2910 2.4297 3.6004 35 1 5.5966 0.6761 3.6104 36 1 7.6185 1.9458 6.4136 37 1 0.2254 5.3045 -3.3986 38 1 -0.3708 4.0033 -4.4568 39 1 -1.1884 4.3388 -2.9118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169111085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:34 Heat of formation + Delta-G solvation = 75.104324 kcal Electronic energy + Delta-G solvation = -20970.366380 eV Core-core repulsion = 17722.871647 eV Total energy + Delta-G solvation = -3247.494734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.63028 -38.33604 -36.55113 -35.41637 -34.05069 -33.22937 -32.66012 -31.04796 -29.05493 -27.44637 -25.49554 -23.77599 -23.02274 -22.73044 -21.84221 -20.40618 -18.24228 -17.71332 -16.72565 -16.54476 -15.81644 -15.31535 -14.97872 -14.74833 -14.33494 -13.98061 -13.74385 -13.42421 -13.22502 -12.96326 -12.81471 -12.52587 -12.19656 -12.18178 -12.05769 -11.73221 -11.70724 -11.46227 -11.28768 -11.14743 -11.03638 -10.94702 -10.76815 -10.56907 -10.28590 -9.93925 -9.55878 -9.26866 -8.50736 -8.45026 -6.09992 -4.13181 1.10573 2.17576 2.73972 3.31469 3.35447 3.36188 3.39945 3.56589 3.63277 4.00645 4.22950 4.42008 4.62833 4.70797 4.79318 4.88587 4.94037 4.99838 5.13389 5.27254 5.28128 5.42363 5.44190 5.54937 5.61292 5.66407 5.77356 5.84917 5.92694 6.06587 6.07782 6.30962 6.51371 6.89567 7.27683 7.41894 7.51355 7.84897 8.16084 8.22340 8.39832 8.90996 9.52299 11.00849 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.003382 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.706299 B = 8277.080365 C = 8513.621361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.152 4.152 3 C 0.177 3.823 4 H 0.112 0.888 5 N -0.685 5.685 6 C 0.069 3.931 7 C 0.008 3.992 8 H 0.111 0.889 9 C 0.241 3.759 10 N -0.475 5.475 11 C 0.033 3.967 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.194 3.806 21 N -0.370 5.370 22 O 0.073 5.927 23 C 0.167 3.833 24 C -0.060 4.060 25 N -0.479 5.479 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.347 0.653 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.807 3.715 -14.357 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.192 4.192 3 C 0.065 3.935 4 H 0.130 0.870 5 N -0.316 5.316 6 C -0.061 4.061 7 C -0.014 4.014 8 H 0.129 0.871 9 C -0.076 4.076 10 N -0.152 5.152 11 C -0.005 4.005 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.080 4.080 21 N -0.076 5.076 22 O 0.014 5.986 23 C -0.054 4.054 24 C -0.118 4.118 25 N -0.213 5.213 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.167 0.833 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.440 2.517 -14.639 22.908 hybrid contribution 0.727 -0.270 0.457 0.900 sum -16.713 2.246 -14.182 22.034 Atomic orbital electron populations 1.21677 0.94730 1.01756 1.02126 1.22281 0.97500 0.95984 1.03388 1.19809 0.89475 0.94098 0.90145 0.86986 1.60363 1.05880 1.52253 1.13065 1.22165 0.95128 1.01813 0.86982 1.19313 0.90924 0.90674 1.00451 0.87140 1.29281 0.92713 0.94087 0.91531 1.81037 1.09740 1.12364 1.12023 1.19161 0.97146 0.98711 0.85507 1.21105 0.93067 1.49922 0.92455 0.92551 1.24946 0.98217 0.94987 0.95772 1.69928 1.35835 1.49646 0.97633 0.86647 0.85419 0.78994 0.76990 1.20002 1.21171 1.20264 1.25630 0.90928 0.95501 0.95918 1.74621 1.18267 1.14435 1.00326 1.85311 1.37083 1.40951 1.35224 1.28779 0.91913 0.96155 0.88517 1.20343 0.96402 0.94715 1.00331 1.71846 1.20765 1.14183 1.14543 0.92451 0.93173 0.91951 0.90081 0.91370 0.83327 0.88680 0.94050 0.94161 0.95660 0.92726 0.88152 0.88669 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.71 37.16 0.36 -1.04 16 2 C -0.15 -1.67 5.37 -26.73 -0.14 -1.82 16 3 C 0.18 2.21 2.61 -68.87 -0.18 2.03 16 4 H 0.11 1.32 7.69 -51.93 -0.40 0.93 16 5 N -0.68 -9.73 6.18 -107.96 -0.67 -10.40 16 6 C 0.07 1.01 4.94 -3.83 -0.02 0.99 16 7 C 0.01 0.16 2.42 -93.41 -0.23 -0.07 16 8 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 9 C 0.24 4.96 13.07 -20.76 -0.27 4.68 16 10 N -0.47 -10.55 18.54 42.15 0.78 -9.77 16 11 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 12 C -0.53 -14.14 8.60 -34.44 -0.30 -14.43 16 13 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.19 2.60 6.08 -156.37 -0.95 1.65 16 21 N -0.37 -5.24 12.15 30.90 0.38 -4.87 16 22 O 0.07 0.87 11.31 18.09 0.20 1.08 16 23 C 0.17 1.61 8.51 -13.06 -0.11 1.50 16 24 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 25 N -0.48 -5.85 11.55 -9.87 -0.11 -5.96 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.52 7.44 -51.93 -0.39 0.14 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.87 7.53 -51.93 -0.39 0.48 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.35 5.23 7.68 -39.29 -0.30 4.93 16 32 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 33 H 0.04 0.59 7.56 -51.93 -0.39 0.19 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -32.22 340.58 -5.87 -38.09 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.62 Total: -0.85 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.68 Total: -4.07 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 1.11 Total: -55.83 kcal Atomic # 8 Polarization: 0.87 SS G_CDS: 0.20 Total: 1.08 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.22 -5.87 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169111085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.192 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds