Wall clock time and date at job start Tue Mar 31 2020 00:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46825 * 2 1 4 4 H 1.09003 * 109.47362 * 54.59542 * 3 2 1 5 5 N 1.46897 * 109.47025 * 174.59614 * 3 2 1 6 6 C 1.46901 * 111.00272 * 273.66690 * 5 3 2 7 7 C 1.52995 * 109.47539 * 185.35412 * 6 5 3 8 8 H 1.09002 * 109.47257 * 55.00328 * 7 6 5 9 9 C 1.47198 * 109.47299 * 295.00259 * 7 6 5 10 10 N 5.08911 * 171.45734 * 134.69477 * 2 1 3 11 11 C 1.53002 * 109.47160 * 174.99760 * 7 6 5 12 12 C 1.50703 * 109.47185 * 185.00026 * 11 7 6 13 13 H 1.08005 * 119.99719 * 0.02562 * 12 11 7 14 14 C 1.37871 * 120.00049 * 180.02562 * 12 11 7 15 15 N 1.31522 * 120.00090 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00108 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46758 * 60.00360 * 16 14 12 18 18 H 1.48497 * 109.47078 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47369 * 300.00337 * 16 14 12 20 20 C 1.50699 * 109.47405 * 294.59370 * 3 2 1 21 21 N 1.29949 * 126.28765 * 284.69484 * 20 3 2 22 22 O 1.21297 * 110.25240 * 179.83735 * 21 20 3 23 23 C 1.33646 * 109.81311 * 0.42622 * 22 21 20 24 24 C 1.50695 * 126.55614 * 179.71821 * 23 22 21 25 25 N 1.31130 * 106.89145 * 359.73305 * 23 22 21 26 26 H 1.08998 * 109.46651 * 181.34599 * 1 2 3 27 27 H 1.08994 * 109.47078 * 61.34800 * 1 2 3 28 28 H 1.09001 * 109.47282 * 301.34712 * 1 2 3 29 29 H 1.08994 * 109.47349 * 119.99680 * 2 1 3 30 30 H 1.08998 * 109.47214 * 240.00042 * 2 1 3 31 31 H 1.00899 * 111.00815 * 37.62295 * 5 3 2 32 32 H 1.09003 * 109.47055 * 305.35960 * 6 5 3 33 33 H 1.08997 * 109.46979 * 65.35199 * 6 5 3 34 34 H 1.08998 * 109.47439 * 305.00136 * 11 7 6 35 35 H 1.09004 * 109.46767 * 65.00285 * 11 7 6 36 36 H 0.97001 * 119.99972 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47167 * 270.02567 * 24 23 22 38 38 H 1.08999 * 109.46863 * 30.01997 * 24 23 22 39 39 H 1.08994 * 109.47492 * 150.02147 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 0.8376 5 7 3.5031 1.4446 0.1304 6 6 3.9059 1.4007 1.5425 7 6 5.4263 1.5386 1.6437 8 1 5.7439 2.4456 1.1293 9 6 6.0677 0.3701 1.0193 10 7 6.5627 -0.5317 0.5374 11 6 5.8342 1.6182 3.1162 12 6 7.3156 1.8770 3.2138 13 1 7.9069 1.9753 2.3154 14 6 7.9160 1.9882 4.4499 15 7 7.1960 1.8680 5.5440 16 14 9.7524 2.3082 4.5709 17 1 10.0765 3.5917 3.8979 18 1 10.1485 2.3844 6.0001 19 1 10.4922 1.2026 3.9110 20 6 1.6499 2.1133 -1.2919 21 7 2.2012 1.9246 -2.4534 22 8 1.6574 2.6110 -3.2928 23 6 0.6837 3.3312 -2.7276 24 6 -0.2254 4.3123 -3.4217 25 7 0.6710 3.0213 -1.4535 26 1 -0.3632 -1.0274 0.0241 27 1 -0.3633 0.4927 -0.9018 28 1 -0.3634 0.5346 0.8777 29 1 1.8934 -0.5137 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.9135 0.6814 -0.3865 32 1 3.4300 2.2197 2.0817 33 1 3.5974 0.4507 1.9788 34 1 5.2910 2.4297 3.6004 35 1 5.5966 0.6761 3.6104 36 1 7.6185 1.9458 6.4136 37 1 0.2254 5.3045 -3.3986 38 1 -0.3708 4.0033 -4.4568 39 1 -1.1884 4.3388 -2.9118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169111085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:34 Heat of formation + Delta-G solvation = 52.111881 kcal Electronic energy + Delta-G solvation = -20971.363407 eV Core-core repulsion = 17722.871647 eV Total energy + Delta-G solvation = -3248.491761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.52937 -39.50831 -37.94469 -36.42960 -35.66659 -34.55229 -33.75789 -32.49279 -29.67374 -28.87151 -26.92887 -24.70606 -24.18485 -23.79859 -23.57646 -21.29870 -19.14845 -18.79662 -18.38301 -18.22395 -16.96711 -16.71886 -16.14954 -15.89166 -15.46843 -14.97685 -14.79267 -14.46196 -14.40004 -14.10454 -13.98442 -13.87512 -13.58705 -13.23430 -13.22392 -13.05522 -12.88146 -12.69376 -12.60119 -12.50683 -12.38002 -12.26414 -12.07025 -12.01696 -11.84461 -11.42624 -11.22057 -10.77498 -10.55601 -9.60639 -8.20484 -6.28572 0.29567 1.26978 1.40180 1.41451 1.48732 1.90444 1.94003 2.05899 2.39873 2.51311 3.06613 3.14193 3.21421 3.31929 3.74073 3.84010 4.11627 4.17131 4.24612 4.39009 4.43566 4.63778 4.66964 4.67574 4.70489 4.78216 4.89188 4.90211 4.97507 5.02238 5.11515 5.19381 5.26045 5.45721 5.60671 5.76063 5.80579 6.10243 6.19564 6.72110 6.85406 7.30394 7.39781 8.90135 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.003382 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.706299 B = 8277.080365 C = 8513.621361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.146 4.146 3 C 0.178 3.822 4 H 0.120 0.880 5 N -0.690 5.690 6 C 0.080 3.920 7 C 0.020 3.980 8 H 0.118 0.882 9 C 0.251 3.749 10 N -0.504 5.504 11 C 0.040 3.960 12 C -0.542 4.542 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.921 5.921 16 Si 0.947 3.053 17 H -0.264 1.264 18 H -0.280 1.280 19 H -0.282 1.282 20 C 0.185 3.815 21 N -0.401 5.401 22 O 0.066 5.934 23 C 0.180 3.820 24 C -0.059 4.059 25 N -0.503 5.503 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.341 0.659 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.005 0.995 36 H 0.265 0.735 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.898 4.754 -15.107 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.186 4.186 3 C 0.066 3.934 4 H 0.138 0.862 5 N -0.320 5.320 6 C -0.049 4.049 7 C -0.002 4.002 8 H 0.135 0.865 9 C -0.065 4.065 10 N -0.182 5.182 11 C 0.002 3.998 12 C -0.580 4.580 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.561 5.561 16 Si 0.773 3.227 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.207 1.207 20 C -0.089 4.089 21 N -0.110 5.110 22 O 0.008 5.992 23 C -0.040 4.040 24 C -0.117 4.117 25 N -0.237 5.237 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.552 3.575 -15.405 24.378 hybrid contribution 1.004 -0.545 0.625 1.302 sum -17.548 3.030 -14.780 23.142 Atomic orbital electron populations 1.21624 0.93544 1.02463 1.01999 1.22219 0.98463 0.94940 1.02971 1.19871 0.88192 0.94995 0.90327 0.86191 1.60292 1.07296 1.52096 1.12321 1.22021 0.92190 1.02951 0.87786 1.19214 0.93474 0.90137 0.97366 0.86475 1.29650 0.91971 0.93972 0.90927 1.81035 1.10792 1.13373 1.12957 1.18975 0.95320 0.97369 0.88171 1.21521 0.95031 1.49233 0.92247 0.93036 1.25683 1.02081 0.95111 0.95718 1.70016 1.37345 1.50751 0.98005 0.85772 0.80816 0.78947 0.77186 1.18901 1.20543 1.20749 1.25782 0.91305 0.95837 0.95968 1.74603 1.19657 1.15867 1.00887 1.85265 1.37725 1.41236 1.34927 1.29872 0.90887 0.95178 0.88053 1.20728 0.95712 0.93941 1.01310 1.71856 1.21127 1.14794 1.15943 0.91377 0.94093 0.91152 0.89679 0.92527 0.84022 0.87014 0.93323 0.94303 0.97673 0.92641 0.86381 0.86165 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.71 71.98 0.70 -1.80 16 2 C -0.15 -3.10 5.37 30.60 0.16 -2.94 16 3 C 0.18 4.28 2.61 44.17 0.12 4.39 16 4 H 0.12 2.66 7.69 -2.39 -0.02 2.64 16 5 N -0.69 -19.05 6.18 -495.46 -3.06 -22.11 16 6 C 0.08 2.26 4.94 86.30 0.43 2.69 16 7 C 0.02 0.73 2.42 -12.60 -0.03 0.70 16 8 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 9 C 0.25 10.28 13.07 89.44 1.17 11.44 16 10 N -0.50 -22.40 18.54 20.01 0.37 -22.03 16 11 C 0.04 1.86 4.42 29.85 0.13 1.99 16 12 C -0.54 -29.00 8.60 25.60 0.22 -28.78 16 13 H 0.05 2.75 7.59 -2.91 -0.02 2.72 16 14 C 0.01 0.73 5.46 84.65 0.46 1.19 16 15 N -0.92 -52.87 13.29 21.45 0.28 -52.58 16 16 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 20 C 0.18 4.84 6.08 138.46 0.84 5.68 16 21 N -0.40 -11.27 12.15 -60.31 -0.73 -12.00 16 22 O 0.07 1.52 11.31 74.81 0.85 2.37 16 23 C 0.18 3.19 8.51 88.38 0.75 3.94 16 24 C -0.06 -0.30 10.51 71.23 0.75 0.44 16 25 N -0.50 -11.69 11.55 -303.19 -3.50 -15.19 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.81 7.44 -2.39 -0.02 0.79 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.73 7.53 -2.39 -0.02 1.71 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.34 10.17 7.68 -89.69 -0.69 9.49 16 32 H 0.11 2.82 7.92 -2.39 -0.02 2.81 16 33 H 0.05 1.32 7.56 -2.39 -0.02 1.30 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -68.94 340.58 2.31 -66.64 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.37 Total: 10.14 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.70 Total: -1.04 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -6.64 Total: -123.92 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.85 Total: 2.37 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.94 2.31 -66.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169111085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.749 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds