Wall clock time and date at job start Tue Mar 31 2020 00:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47429 * 2 1 4 4 H 1.09003 * 109.47201 * 55.43436 * 3 2 1 5 5 C 1.53010 * 109.46746 * 295.43789 * 3 2 1 6 6 C 1.53001 * 109.47375 * 175.44219 * 3 2 1 7 7 H 1.08995 * 109.46935 * 175.40938 * 6 3 2 8 8 N 1.46492 * 109.47205 * 55.40501 * 6 3 2 9 9 C 1.37945 * 119.99652 * 155.00079 * 8 6 3 10 10 N 1.32615 * 120.23895 * 0.02562 * 9 8 6 11 11 C 1.32241 * 120.08885 * 179.97438 * 10 9 8 12 12 C 1.38963 * 120.56885 * 359.97438 * 11 10 9 13 13 N 1.31724 * 120.47806 * 0.02562 * 12 11 10 14 14 C 1.33910 * 119.88926 * 359.97438 * 13 12 11 15 15 C 1.40825 * 120.27701 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00141 * 180.02562 * 15 14 13 17 17 C 1.40122 * 119.99839 * 359.97438 * 15 14 13 18 18 N 1.30736 * 119.99719 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47175 * 89.99810 * 19 17 15 21 21 H 1.48506 * 109.46953 * 209.99694 * 19 17 15 22 22 H 1.48500 * 109.46961 * 329.99599 * 19 17 15 23 23 C 1.50704 * 109.46583 * 295.40711 * 6 3 2 24 24 N 1.34774 * 120.00037 * 279.97137 * 23 6 3 25 25 O 1.21277 * 119.99629 * 99.97968 * 23 6 3 26 26 H 1.08997 * 109.47134 * 300.00520 * 1 2 3 27 27 H 1.09008 * 109.46600 * 60.00598 * 1 2 3 28 28 H 1.08997 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47626 * 239.99671 * 2 1 3 30 30 H 1.09008 * 109.47325 * 119.99574 * 2 1 3 31 31 H 1.08999 * 109.46599 * 179.97438 * 5 3 2 32 32 H 1.08993 * 109.47031 * 299.99795 * 5 3 2 33 33 H 1.09003 * 109.46674 * 59.99956 * 5 3 2 34 34 H 0.96994 * 120.00670 * 335.00551 * 8 6 3 35 35 H 1.08001 * 119.71940 * 180.02562 * 11 10 9 36 36 H 1.08000 * 119.76721 * 180.28119 * 12 11 10 37 37 H 0.97008 * 119.99695 * 180.02562 * 18 17 15 38 38 H 0.97002 * 120.00293 * 355.00566 * 24 23 6 39 39 H 0.97002 * 120.00294 * 174.99199 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6115 1.9794 0.8463 5 6 1.6259 2.1298 -1.3028 6 6 3.5658 1.4440 0.1146 7 1 3.9352 2.4661 0.0327 8 7 4.1371 0.6305 -0.9613 9 6 5.4239 0.8691 -1.3974 10 7 6.1481 1.8333 -0.8456 11 6 7.3815 2.0592 -1.2656 12 6 7.9324 1.2924 -2.2853 13 7 7.2331 0.3290 -2.8492 14 6 5.9823 0.0841 -2.4385 15 6 5.2276 -0.9442 -3.0352 16 1 4.2191 -1.1376 -2.7008 17 6 5.7848 -1.7158 -4.0636 18 7 7.0051 -1.4807 -4.4694 19 14 4.7835 -3.0794 -4.8557 20 1 4.0295 -2.5321 -6.0120 21 1 5.6946 -4.1549 -5.3231 22 1 3.8305 -3.6352 -3.8615 23 6 3.9698 0.8691 1.4478 24 7 3.9200 1.6356 2.5552 25 8 4.3399 -0.2833 1.5241 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.9889 3.1576 -1.3025 32 1 2.0544 1.5929 -2.1490 33 1 0.5389 2.1287 -1.3844 34 1 3.6107 -0.0759 -1.3672 35 1 7.9661 2.8457 -0.8117 36 1 8.9426 1.4851 -2.6151 37 1 7.3907 -2.0146 -5.1816 38 1 3.6940 2.5763 2.4843 39 1 4.1098 1.2466 3.4233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169145272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:40 Heat of formation + Delta-G solvation = -1.928540 kcal Electronic energy + Delta-G solvation = -22431.478476 eV Core-core repulsion = 19180.643346 eV Total energy + Delta-G solvation = -3250.835129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78186 -38.60921 -36.64853 -33.92838 -33.83476 -33.23112 -31.43088 -30.27631 -28.65307 -26.58680 -25.82851 -23.80634 -22.08556 -21.50009 -20.74745 -19.12105 -17.58391 -17.23164 -16.85310 -16.35903 -15.69312 -15.11581 -14.73336 -14.25749 -14.05052 -13.99092 -13.73276 -13.21856 -13.11665 -12.71100 -12.53245 -12.21736 -11.98321 -11.85734 -11.56002 -11.39087 -11.29507 -10.71408 -10.61267 -10.57696 -10.36787 -10.18416 -10.10251 -9.65751 -9.33113 -9.31460 -9.14536 -8.51452 -7.31685 -6.78286 -6.37442 -4.37651 2.69913 3.07296 3.08440 3.10995 3.13690 3.28749 3.86272 3.93056 4.33393 4.78345 4.86858 4.93355 5.03248 5.32970 5.53170 5.60684 5.68598 5.71189 5.85007 5.94942 5.95533 6.00698 6.16179 6.17644 6.19096 6.20556 6.43364 6.48736 6.53351 6.77237 7.03616 7.09569 7.11962 7.62193 7.71550 8.01324 8.13341 8.40907 8.65996 8.71552 8.90933 9.47735 10.04220 10.28525 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.007284 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.792231 B = 3843.192822 C = 5067.020171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.090 4.090 4 H 0.078 0.922 5 C -0.145 4.145 6 C 0.155 3.845 7 H 0.100 0.900 8 N -0.694 5.694 9 C 0.265 3.735 10 N -0.501 5.501 11 C -0.087 4.087 12 C 0.031 3.969 13 N -0.448 5.448 14 C 0.198 3.802 15 C -0.419 4.419 16 H 0.081 0.919 17 C 0.069 3.931 18 N -0.714 5.714 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.260 1.260 23 C 0.506 3.494 24 N -0.863 5.863 25 O -0.531 6.531 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.407 0.593 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.274 0.726 38 H 0.397 0.603 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.910 5.491 6.692 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.109 4.109 4 H 0.096 0.904 5 C -0.202 4.202 6 C 0.043 3.957 7 H 0.117 0.883 8 N -0.335 5.335 9 C 0.019 3.981 10 N -0.222 5.222 11 C -0.241 4.241 12 C -0.132 4.132 13 N -0.166 5.166 14 C 0.064 3.936 15 C -0.453 4.453 16 H 0.099 0.901 17 C -0.157 4.157 18 N -0.336 5.336 19 Si 0.730 3.270 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.184 1.184 23 C 0.289 3.711 24 N -0.427 5.427 25 O -0.406 6.406 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.224 0.776 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -10.361 4.821 6.452 13.124 hybrid contribution -0.308 -0.451 0.034 0.547 sum -10.669 4.370 6.486 13.229 Atomic orbital electron populations 1.21799 0.95812 1.01501 1.01546 1.21621 0.95708 0.95973 1.03155 1.21353 0.92715 0.97283 0.99544 0.90350 1.21844 1.00748 1.00483 0.97163 1.20538 0.92960 0.96952 0.85276 0.88274 1.43422 1.12454 1.39504 1.38168 1.19258 0.87128 0.95742 0.96013 1.67216 1.07342 1.18445 1.29244 1.22205 0.93152 1.05447 1.03254 1.23136 0.99670 0.94881 0.95526 1.69499 1.05047 1.15861 1.26208 1.19002 0.90535 0.93419 0.90641 1.19221 0.99739 1.11792 1.14588 0.90058 1.26007 0.95013 0.98097 0.96566 1.70103 1.12290 1.31949 1.19222 0.86346 0.80350 0.80400 0.79934 1.19375 1.20070 1.18413 1.21783 0.76126 0.86399 0.86797 1.43956 1.75312 1.13920 1.09555 1.90711 1.45305 1.18309 1.86251 0.93115 0.92403 0.92878 0.91257 0.91475 0.92626 0.91504 0.92443 0.75348 0.86135 0.85931 0.91499 0.77593 0.77821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.66 37.16 0.36 -1.20 16 2 C -0.13 -1.67 4.95 -26.73 -0.13 -1.81 16 3 C -0.09 -1.13 2.20 -90.61 -0.20 -1.33 16 4 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.15 -1.75 8.82 37.16 0.33 -1.42 16 6 C 0.15 2.56 2.08 -69.08 -0.14 2.41 16 7 H 0.10 1.66 7.54 -51.93 -0.39 1.27 16 8 N -0.69 -14.31 4.04 -54.54 -0.22 -14.53 16 9 C 0.27 6.60 7.48 -154.82 -1.16 5.44 16 10 N -0.50 -12.24 9.34 -11.67 -0.11 -12.35 16 11 C -0.09 -2.07 11.22 -17.11 -0.19 -2.26 16 12 C 0.03 0.78 11.21 -17.33 -0.19 0.58 16 13 N -0.45 -12.66 8.03 -10.79 -0.09 -12.74 16 14 C 0.20 5.44 6.56 -84.61 -0.56 4.89 16 15 C -0.42 -10.99 8.89 -37.90 -0.34 -11.33 16 16 H 0.08 1.95 6.12 -52.49 -0.32 1.62 16 17 C 0.07 1.74 5.50 -17.31 -0.10 1.64 16 18 N -0.71 -19.07 11.48 55.56 0.64 -18.43 16 19 Si 0.91 18.47 29.56 -169.99 -5.03 13.44 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 C 0.51 8.80 6.37 -10.98 -0.07 8.73 16 24 N -0.86 -10.59 8.87 31.22 0.28 -10.31 16 25 O -0.53 -11.84 16.98 5.56 0.09 -11.74 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.56 6.55 -51.92 -0.34 0.22 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.01 6.50 -51.93 -0.34 0.67 16 30 H 0.07 1.00 6.92 -51.92 -0.36 0.64 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.94 7.74 -51.93 -0.40 0.54 16 33 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 34 H 0.41 8.25 4.66 -40.82 -0.19 8.06 16 35 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.12 2.72 8.06 -52.49 -0.42 2.30 16 37 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 38 H 0.40 3.59 8.83 -40.82 -0.36 3.23 16 39 H 0.39 4.32 8.93 -40.82 -0.36 3.96 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -33.43 321.90 -7.05 -40.48 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -5.08 Total: 16.97 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.39 Total: 4.36 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: 0.50 Total: -68.36 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.43 -7.05 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169145272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.547 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds