Wall clock time and date at job start Tue Mar 31 2020 00:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47429 * 2 1 4 4 H 1.09003 * 109.47201 * 55.43436 * 3 2 1 5 5 C 1.53010 * 109.46746 * 295.43789 * 3 2 1 6 6 C 1.53001 * 109.47375 * 175.44219 * 3 2 1 7 7 H 1.08995 * 109.46935 * 175.40938 * 6 3 2 8 8 N 1.46492 * 109.47205 * 55.40501 * 6 3 2 9 9 C 1.37945 * 119.99652 * 155.00079 * 8 6 3 10 10 N 1.32615 * 120.23895 * 0.02562 * 9 8 6 11 11 C 1.32241 * 120.08885 * 179.97438 * 10 9 8 12 12 C 1.38963 * 120.56885 * 359.97438 * 11 10 9 13 13 N 1.31724 * 120.47806 * 0.02562 * 12 11 10 14 14 C 1.33910 * 119.88926 * 359.97438 * 13 12 11 15 15 C 1.40825 * 120.27701 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00141 * 180.02562 * 15 14 13 17 17 C 1.40122 * 119.99839 * 359.97438 * 15 14 13 18 18 N 1.30736 * 119.99719 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47175 * 89.99810 * 19 17 15 21 21 H 1.48506 * 109.46953 * 209.99694 * 19 17 15 22 22 H 1.48500 * 109.46961 * 329.99599 * 19 17 15 23 23 C 1.50704 * 109.46583 * 295.40711 * 6 3 2 24 24 N 1.34774 * 120.00037 * 279.97137 * 23 6 3 25 25 O 1.21277 * 119.99629 * 99.97968 * 23 6 3 26 26 H 1.08997 * 109.47134 * 300.00520 * 1 2 3 27 27 H 1.09008 * 109.46600 * 60.00598 * 1 2 3 28 28 H 1.08997 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47626 * 239.99671 * 2 1 3 30 30 H 1.09008 * 109.47325 * 119.99574 * 2 1 3 31 31 H 1.08999 * 109.46599 * 179.97438 * 5 3 2 32 32 H 1.08993 * 109.47031 * 299.99795 * 5 3 2 33 33 H 1.09003 * 109.46674 * 59.99956 * 5 3 2 34 34 H 0.96994 * 120.00670 * 335.00551 * 8 6 3 35 35 H 1.08001 * 119.71940 * 180.02562 * 11 10 9 36 36 H 1.08000 * 119.76721 * 180.28119 * 12 11 10 37 37 H 0.97008 * 119.99695 * 180.02562 * 18 17 15 38 38 H 0.97002 * 120.00293 * 355.00566 * 24 23 6 39 39 H 0.97002 * 120.00294 * 174.99199 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6115 1.9794 0.8463 5 6 1.6259 2.1298 -1.3028 6 6 3.5658 1.4440 0.1146 7 1 3.9352 2.4661 0.0327 8 7 4.1371 0.6305 -0.9613 9 6 5.4239 0.8691 -1.3974 10 7 6.1481 1.8333 -0.8456 11 6 7.3815 2.0592 -1.2656 12 6 7.9324 1.2924 -2.2853 13 7 7.2331 0.3290 -2.8492 14 6 5.9823 0.0841 -2.4385 15 6 5.2276 -0.9442 -3.0352 16 1 4.2191 -1.1376 -2.7008 17 6 5.7848 -1.7158 -4.0636 18 7 7.0051 -1.4807 -4.4694 19 14 4.7835 -3.0794 -4.8557 20 1 4.0295 -2.5321 -6.0120 21 1 5.6946 -4.1549 -5.3231 22 1 3.8305 -3.6352 -3.8615 23 6 3.9698 0.8691 1.4478 24 7 3.9200 1.6356 2.5552 25 8 4.3399 -0.2833 1.5241 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.9889 3.1576 -1.3025 32 1 2.0544 1.5929 -2.1490 33 1 0.5389 2.1287 -1.3844 34 1 3.6107 -0.0759 -1.3672 35 1 7.9661 2.8457 -0.8117 36 1 8.9426 1.4851 -2.6151 37 1 7.3907 -2.0146 -5.1816 38 1 3.6940 2.5763 2.4843 39 1 4.1098 1.2466 3.4233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169145272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:40 Heat of formation + Delta-G solvation = -26.949332 kcal Electronic energy + Delta-G solvation = -22432.563459 eV Core-core repulsion = 19180.643346 eV Total energy + Delta-G solvation = -3251.920112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29556 -40.35729 -37.93148 -35.82991 -35.38582 -34.50734 -33.32805 -31.65172 -30.05842 -28.04291 -27.67076 -24.87499 -23.92464 -23.35286 -21.95274 -20.37411 -19.50767 -18.59133 -18.51091 -17.68899 -17.31601 -16.77457 -16.13181 -15.86575 -15.48886 -15.31684 -15.19932 -14.83958 -14.61673 -14.19133 -13.85009 -13.78661 -13.23763 -13.18853 -12.95832 -12.79636 -12.52510 -12.38151 -11.96525 -11.93247 -11.74056 -11.60157 -11.49763 -11.41650 -11.23142 -10.79671 -10.54790 -10.32561 -9.24991 -8.61131 -8.26817 -6.32634 0.81152 1.25041 1.40591 1.52738 1.55893 1.75599 2.21982 2.52173 2.85954 2.89875 3.76254 3.85849 3.92524 3.98616 4.21351 4.27354 4.32095 4.47531 4.59866 4.63125 4.67948 4.71132 4.81741 4.93427 5.07546 5.12934 5.17667 5.21226 5.23041 5.24552 5.49161 5.54478 5.81748 5.99396 6.11224 6.26119 6.53012 6.70572 6.76965 7.00554 7.48106 7.58496 8.10170 8.43391 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.007284 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.792231 B = 3843.192822 C = 5067.020171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.080 4.080 4 H 0.113 0.887 5 C -0.142 4.142 6 C 0.151 3.849 7 H 0.101 0.899 8 N -0.688 5.688 9 C 0.263 3.737 10 N -0.507 5.507 11 C -0.082 4.082 12 C 0.005 3.995 13 N -0.485 5.485 14 C 0.159 3.841 15 C -0.445 4.445 16 H 0.092 0.908 17 C 0.022 3.978 18 N -0.755 5.755 19 Si 0.984 3.016 20 H -0.258 1.258 21 H -0.271 1.271 22 H -0.254 1.254 23 C 0.503 3.497 24 N -0.837 5.837 25 O -0.588 6.588 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.406 0.594 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.279 0.721 38 H 0.416 0.584 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 6.401 7.545 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C -0.099 4.099 4 H 0.131 0.869 5 C -0.199 4.199 6 C 0.040 3.960 7 H 0.119 0.881 8 N -0.328 5.328 9 C 0.016 3.984 10 N -0.229 5.229 11 C -0.236 4.236 12 C -0.157 4.157 13 N -0.203 5.203 14 C 0.025 3.975 15 C -0.479 4.479 16 H 0.110 0.890 17 C -0.199 4.199 18 N -0.378 5.378 19 Si 0.804 3.196 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.178 1.178 23 C 0.287 3.713 24 N -0.402 5.402 25 O -0.468 6.468 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.090 0.910 38 H 0.247 0.753 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.604 5.815 7.368 15.715 hybrid contribution 0.391 -0.610 -0.106 0.732 sum -12.213 5.206 7.262 15.133 Atomic orbital electron populations 1.21759 0.93256 1.02090 1.02912 1.21583 0.97877 0.95835 1.01099 1.21392 0.89648 0.97485 1.01347 0.86881 1.21826 1.02341 1.00163 0.95568 1.20850 0.95514 0.95870 0.83753 0.88109 1.43499 1.10947 1.39595 1.38791 1.19446 0.88509 0.95139 0.95319 1.67349 1.07634 1.18569 1.29365 1.22750 0.93189 1.05340 1.02310 1.23532 1.00674 0.95079 0.96411 1.69410 1.05936 1.17320 1.27657 1.19483 0.91066 0.94802 0.92178 1.19593 1.00398 1.12377 1.15547 0.88993 1.26969 0.96012 1.00339 0.96626 1.70213 1.14139 1.33430 1.20052 0.85172 0.78607 0.76822 0.78989 1.18194 1.19593 1.17764 1.21864 0.75565 0.85866 0.88019 1.43672 1.73186 1.14538 1.08754 1.90695 1.48200 1.20734 1.87133 0.91358 0.91305 0.92829 0.93424 0.93535 0.92053 0.94139 0.89779 0.75516 0.82728 0.83883 0.90994 0.75295 0.76649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.66 71.98 0.70 -1.90 16 2 C -0.13 -3.17 4.95 30.59 0.15 -3.02 16 3 C -0.08 -1.83 2.20 -10.79 -0.02 -1.85 16 4 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 5 C -0.14 -3.09 8.82 71.99 0.64 -2.45 16 6 C 0.15 4.82 2.08 44.25 0.09 4.91 16 7 H 0.10 3.21 7.54 -2.39 -0.02 3.19 16 8 N -0.69 -28.69 4.04 -326.46 -1.32 -30.00 16 9 C 0.26 13.34 7.48 134.03 1.00 14.34 16 10 N -0.51 -24.67 9.34 -190.82 -1.78 -26.46 16 11 C -0.08 -3.90 11.22 84.81 0.95 -2.94 16 12 C 0.00 0.24 11.21 84.88 0.95 1.19 16 13 N -0.48 -28.27 8.03 -188.05 -1.51 -29.78 16 14 C 0.16 9.05 6.56 40.35 0.26 9.32 16 15 C -0.44 -24.04 8.89 23.36 0.21 -23.84 16 16 H 0.09 4.54 6.12 -2.91 -0.02 4.53 16 17 C 0.02 1.14 5.50 85.31 0.47 1.61 16 18 N -0.76 -41.60 11.48 21.86 0.25 -41.35 16 19 Si 0.98 38.32 29.56 68.60 2.03 40.35 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 23 C 0.50 17.01 6.37 87.66 0.56 17.56 16 24 N -0.84 -18.58 8.87 -173.53 -1.54 -20.12 16 25 O -0.59 -26.46 16.98 -3.02 -0.05 -26.51 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.11 6.55 -2.38 -0.02 1.09 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.39 6.50 -2.39 -0.02 1.37 16 30 H 0.05 1.36 6.92 -2.38 -0.02 1.35 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.10 7.74 -2.39 -0.02 1.08 16 33 H 0.08 1.39 6.55 -2.39 -0.02 1.38 16 34 H 0.41 16.89 4.66 -92.71 -0.43 16.46 16 35 H 0.16 6.09 8.06 -2.91 -0.02 6.07 16 36 H 0.14 6.42 8.06 -2.91 -0.02 6.40 16 37 H 0.28 13.92 8.29 -92.70 -0.77 13.15 16 38 H 0.42 6.15 8.83 -92.71 -0.82 5.33 16 39 H 0.40 7.97 8.93 -92.71 -0.83 7.14 16 Total: -1.00 -75.58 321.90 1.06 -74.52 By element: Atomic # 1 Polarization: 47.39 SS G_CDS: -0.97 Total: 46.43 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.96 Total: 12.93 kcal Atomic # 7 Polarization: -141.81 SS G_CDS: -5.90 Total: -147.72 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -75.58 1.06 -74.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169145272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.570 kcal (2) G-P(sol) polarization free energy of solvation -75.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds