Wall clock time and date at job start Tue Mar 31 2020 00:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47301 * 2 1 4 4 H 1.09000 * 109.46977 * 54.89505 * 3 2 1 5 5 C 1.52998 * 109.47009 * 294.89606 * 3 2 1 6 6 C 1.52998 * 109.47275 * 174.89450 * 3 2 1 7 7 H 1.09006 * 109.46732 * 304.63927 * 6 3 2 8 8 N 1.46496 * 109.46981 * 184.63888 * 6 3 2 9 9 C 1.38807 * 119.99622 * 155.00003 * 8 6 3 10 10 C 1.40084 * 120.76328 * 359.72027 * 9 8 6 11 11 N 1.31651 * 119.13714 * 179.71163 * 10 9 8 12 12 C 1.33603 * 120.79628 * 0.57678 * 11 10 9 13 13 C 1.41142 * 119.17422 * 179.67790 * 12 11 10 14 14 H 1.08001 * 120.00019 * 180.02562 * 13 12 11 15 15 C 1.40042 * 119.99934 * 0.02562 * 13 12 11 16 16 N 1.30721 * 120.00329 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99800 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47071 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47155 * 119.99726 * 17 15 13 20 20 H 1.48503 * 109.46985 * 239.99499 * 17 15 13 21 21 N 1.33599 * 121.64976 * 359.69923 * 12 11 10 22 22 C 1.31657 * 120.79741 * 359.97438 * 21 12 11 23 23 C 1.50697 * 109.47176 * 64.63680 * 6 3 2 24 24 N 1.34776 * 120.00348 * 275.46961 * 23 6 3 25 25 O 1.21288 * 119.99989 * 95.47043 * 23 6 3 26 26 H 1.09004 * 109.47515 * 299.99777 * 1 2 3 27 27 H 1.09006 * 109.47261 * 59.99897 * 1 2 3 28 28 H 1.09000 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47515 * 240.00223 * 2 1 3 30 30 H 1.08997 * 109.47322 * 119.99811 * 2 1 3 31 31 H 1.09000 * 109.46954 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47168 * 299.99781 * 5 3 2 33 33 H 1.09004 * 109.47217 * 59.99696 * 5 3 2 34 34 H 0.97003 * 120.00291 * 335.00203 * 8 6 3 35 35 H 1.08000 * 120.42417 * 359.97438 * 10 9 8 36 36 H 0.97003 * 120.00392 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.43155 * 180.02562 * 22 21 12 38 38 H 0.96998 * 119.99559 * 354.94074 * 24 23 6 39 39 H 0.96997 * 120.00063 * 174.93591 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6039 1.9821 0.8407 5 6 1.6375 2.1258 -1.3084 6 6 3.5646 1.4445 0.1284 7 1 3.8549 0.8861 1.0184 8 7 4.0435 2.8244 0.2398 9 6 5.2534 3.0907 0.8658 10 6 6.0265 2.0527 1.4018 11 7 7.1717 2.3411 1.9836 12 6 7.5927 3.6057 2.0761 13 6 8.8228 3.8765 2.7130 14 1 9.1757 4.8939 2.7955 15 6 9.5857 2.8260 3.2379 16 7 9.1584 1.5946 3.1385 17 14 11.2134 3.1845 4.0815 18 1 11.4685 4.6473 4.0635 19 1 11.1579 2.7085 5.4870 20 1 12.3079 2.4826 3.3641 21 7 6.8783 4.6203 1.5811 22 6 5.7267 4.4042 0.9807 23 6 4.1721 0.7987 -1.0902 24 7 4.2990 -0.5418 -1.1500 25 8 4.5469 1.4852 -2.0171 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0004 3.1536 -1.3082 32 1 2.0735 1.5862 -2.1492 33 1 0.5513 2.1244 -1.3999 34 1 3.5151 3.5521 -0.1239 35 1 5.6894 1.0289 1.3347 36 1 9.6866 0.8669 3.5024 37 1 5.1542 5.2288 0.5824 38 1 4.0678 -1.0856 -0.3808 39 1 4.6214 -0.9626 -1.9622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169155850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:43 Heat of formation + Delta-G solvation = 2.774472 kcal Electronic energy + Delta-G solvation = -21835.332881 eV Core-core repulsion = 18584.701690 eV Total energy + Delta-G solvation = -3250.631191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.07325 -38.72327 -36.65518 -34.66028 -33.38679 -33.21186 -31.69536 -30.42041 -28.65365 -27.13687 -25.16203 -23.94753 -22.74601 -21.66191 -20.81053 -19.48892 -17.80009 -17.23779 -16.92447 -16.28706 -15.55453 -15.42431 -15.16664 -14.58728 -14.31150 -14.02596 -13.69925 -13.62319 -13.06485 -12.95173 -12.63818 -12.32337 -12.16072 -11.89494 -11.60950 -11.24316 -11.15582 -11.05246 -10.88156 -10.71621 -10.52796 -10.35044 -10.13644 -9.48471 -9.44454 -9.36253 -9.13614 -8.88167 -7.24825 -6.79023 -6.39193 -4.35531 2.72769 2.89332 2.95014 3.14559 3.19560 3.21000 3.66981 4.01190 4.12160 4.66694 4.71756 4.79457 4.81423 5.11020 5.14703 5.33316 5.43224 5.50481 5.58705 5.77939 5.79864 5.82506 5.88044 5.92294 5.96219 6.02824 6.16292 6.25914 6.29280 6.47052 6.93068 7.09459 7.16065 7.35990 7.49618 8.10108 8.30448 8.48333 8.52325 8.59409 8.76910 9.23442 10.25853 10.41694 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.004155 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.625972 B = 6738.017509 C = 7012.304982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.090 4.090 4 H 0.088 0.912 5 C -0.150 4.150 6 C 0.153 3.847 7 H 0.090 0.910 8 N -0.723 5.723 9 C -0.039 4.039 10 C 0.101 3.899 11 N -0.474 5.474 12 C 0.370 3.630 13 C -0.413 4.413 14 H 0.089 0.911 15 C 0.069 3.931 16 N -0.726 5.726 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.274 1.274 21 N -0.565 5.565 22 C 0.109 3.891 23 C 0.501 3.499 24 N -0.862 5.862 25 O -0.530 6.530 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.391 0.609 35 H 0.120 0.880 36 H 0.270 0.730 37 H 0.127 0.873 38 H 0.398 0.602 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.487 -7.182 -4.101 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.110 4.110 4 H 0.106 0.894 5 C -0.207 4.207 6 C 0.040 3.960 7 H 0.108 0.892 8 N -0.359 5.359 9 C -0.143 4.143 10 C -0.076 4.076 11 N -0.191 5.191 12 C 0.129 3.871 13 C -0.450 4.450 14 H 0.107 0.893 15 C -0.156 4.156 16 N -0.350 5.350 17 Si 0.738 3.262 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.199 1.199 21 N -0.284 5.284 22 C -0.066 4.066 23 C 0.284 3.716 24 N -0.427 5.427 25 O -0.405 6.405 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.226 0.774 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.226 0.774 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.257 -6.717 -4.017 15.394 hybrid contribution -0.294 -0.487 -0.305 0.645 sum -13.550 -7.204 -4.322 15.943 Atomic orbital electron populations 1.21783 0.95436 1.01572 1.02036 1.21690 0.96472 0.95768 1.02544 1.21340 0.92492 0.97273 0.99866 0.89354 1.21908 1.00972 1.01107 0.96737 1.20592 0.93467 0.86618 0.95273 0.89182 1.43229 1.22026 1.03782 1.66860 1.19173 0.91234 0.96704 1.07207 1.22572 0.92106 0.96345 0.96592 1.69252 1.11287 1.21608 1.16967 1.19815 0.93498 0.82491 0.91324 1.19133 1.00370 0.94938 1.30549 0.89260 1.25999 0.99549 0.94600 0.95440 1.70152 1.34741 0.99466 1.30670 0.86169 0.81037 0.79968 0.79014 1.18320 1.19920 1.19945 1.68558 1.06941 1.36762 1.16110 1.22173 0.93754 0.92590 0.98036 1.21827 0.77649 0.82088 0.90030 1.44089 1.71088 1.08048 1.19449 1.90705 1.47997 1.62586 1.39187 0.92607 0.92481 0.92766 0.91314 0.91441 0.92223 0.92323 0.92322 0.77438 0.86306 0.91867 0.85524 0.77389 0.77534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.15 0.36 -0.72 16 2 C -0.13 -1.03 4.68 -26.73 -0.13 -1.15 16 3 C -0.09 -0.94 2.32 -90.62 -0.21 -1.15 16 4 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -1.61 8.41 37.16 0.31 -1.30 16 6 C 0.15 2.12 1.88 -69.09 -0.13 1.99 16 7 H 0.09 1.24 6.52 -51.93 -0.34 0.90 16 8 N -0.72 -12.37 4.77 -52.89 -0.25 -12.63 16 9 C -0.04 -0.85 6.69 -83.32 -0.56 -1.41 16 10 C 0.10 2.43 10.43 -16.94 -0.18 2.26 16 11 N -0.47 -13.40 7.84 -12.49 -0.10 -13.50 16 12 C 0.37 10.79 7.35 -158.22 -1.16 9.62 16 13 C -0.41 -11.77 9.35 -37.80 -0.35 -12.12 16 14 H 0.09 2.46 7.85 -52.49 -0.41 2.05 16 15 C 0.07 1.81 5.50 -17.35 -0.10 1.71 16 16 N -0.73 -19.70 11.41 55.55 0.63 -19.07 16 17 Si 0.91 19.27 29.56 -169.99 -5.02 14.25 16 18 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 N -0.56 -15.46 10.34 -12.49 -0.13 -15.59 16 22 C 0.11 2.57 11.20 -16.93 -0.19 2.38 16 23 C 0.50 7.60 5.50 -10.99 -0.06 7.53 16 24 N -0.86 -9.33 7.71 31.22 0.24 -9.09 16 25 O -0.53 -10.50 16.84 5.55 0.09 -10.40 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.56 6.69 -51.93 -0.35 0.21 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.69 6.75 -51.93 -0.35 0.34 16 32 H 0.06 0.72 6.75 -51.93 -0.35 0.37 16 33 H 0.06 0.52 6.57 -51.93 -0.34 0.17 16 34 H 0.39 6.11 7.18 -40.82 -0.29 5.82 16 35 H 0.12 2.54 6.35 -52.49 -0.33 2.21 16 36 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 37 H 0.13 2.54 8.06 -52.48 -0.42 2.12 16 38 H 0.40 3.16 8.44 -40.82 -0.34 2.81 16 39 H 0.39 3.89 8.93 -40.82 -0.36 3.53 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -34.60 320.29 -7.16 -41.77 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.06 Total: 11.78 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.39 Total: 7.65 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: 0.39 Total: -69.87 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.60 -7.16 -41.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169155850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.541 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds