Wall clock time and date at job start Tue Mar 31 2020 00:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47301 * 2 1 4 4 H 1.09000 * 109.46977 * 54.89505 * 3 2 1 5 5 C 1.52998 * 109.47009 * 294.89606 * 3 2 1 6 6 C 1.52998 * 109.47275 * 174.89450 * 3 2 1 7 7 H 1.09006 * 109.46732 * 304.63927 * 6 3 2 8 8 N 1.46496 * 109.46981 * 184.63888 * 6 3 2 9 9 C 1.38807 * 119.99622 * 155.00003 * 8 6 3 10 10 C 1.40084 * 120.76328 * 359.72027 * 9 8 6 11 11 N 1.31651 * 119.13714 * 179.71163 * 10 9 8 12 12 C 1.33603 * 120.79628 * 0.57678 * 11 10 9 13 13 C 1.41142 * 119.17422 * 179.67790 * 12 11 10 14 14 H 1.08001 * 120.00019 * 180.02562 * 13 12 11 15 15 C 1.40042 * 119.99934 * 0.02562 * 13 12 11 16 16 N 1.30721 * 120.00329 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99800 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47071 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47155 * 119.99726 * 17 15 13 20 20 H 1.48503 * 109.46985 * 239.99499 * 17 15 13 21 21 N 1.33599 * 121.64976 * 359.69923 * 12 11 10 22 22 C 1.31657 * 120.79741 * 359.97438 * 21 12 11 23 23 C 1.50697 * 109.47176 * 64.63680 * 6 3 2 24 24 N 1.34776 * 120.00348 * 275.46961 * 23 6 3 25 25 O 1.21288 * 119.99989 * 95.47043 * 23 6 3 26 26 H 1.09004 * 109.47515 * 299.99777 * 1 2 3 27 27 H 1.09006 * 109.47261 * 59.99897 * 1 2 3 28 28 H 1.09000 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47515 * 240.00223 * 2 1 3 30 30 H 1.08997 * 109.47322 * 119.99811 * 2 1 3 31 31 H 1.09000 * 109.46954 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47168 * 299.99781 * 5 3 2 33 33 H 1.09004 * 109.47217 * 59.99696 * 5 3 2 34 34 H 0.97003 * 120.00291 * 335.00203 * 8 6 3 35 35 H 1.08000 * 120.42417 * 359.97438 * 10 9 8 36 36 H 0.97003 * 120.00392 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.43155 * 180.02562 * 22 21 12 38 38 H 0.96998 * 119.99559 * 354.94074 * 24 23 6 39 39 H 0.96997 * 120.00063 * 174.93591 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6039 1.9821 0.8407 5 6 1.6375 2.1258 -1.3084 6 6 3.5646 1.4445 0.1284 7 1 3.8549 0.8861 1.0184 8 7 4.0435 2.8244 0.2398 9 6 5.2534 3.0907 0.8658 10 6 6.0265 2.0527 1.4018 11 7 7.1717 2.3411 1.9836 12 6 7.5927 3.6057 2.0761 13 6 8.8228 3.8765 2.7130 14 1 9.1757 4.8939 2.7955 15 6 9.5857 2.8260 3.2379 16 7 9.1584 1.5946 3.1385 17 14 11.2134 3.1845 4.0815 18 1 11.4685 4.6473 4.0635 19 1 11.1579 2.7085 5.4870 20 1 12.3079 2.4826 3.3641 21 7 6.8783 4.6203 1.5811 22 6 5.7267 4.4042 0.9807 23 6 4.1721 0.7987 -1.0902 24 7 4.2990 -0.5418 -1.1500 25 8 4.5469 1.4852 -2.0171 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0004 3.1536 -1.3082 32 1 2.0735 1.5862 -2.1492 33 1 0.5513 2.1244 -1.3999 34 1 3.5151 3.5521 -0.1239 35 1 5.6894 1.0289 1.3347 36 1 9.6866 0.8669 3.5024 37 1 5.1542 5.2288 0.5824 38 1 4.0678 -1.0856 -0.3808 39 1 4.6214 -0.9626 -1.9622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169155850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:42 Heat of formation + Delta-G solvation = -23.934362 kcal Electronic energy + Delta-G solvation = -21836.491063 eV Core-core repulsion = 18584.701690 eV Total energy + Delta-G solvation = -3251.789373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40866 -40.51032 -37.77486 -36.16158 -35.03949 -34.45937 -33.67613 -31.67253 -30.08016 -28.42039 -26.85919 -25.08191 -24.43173 -23.30263 -21.94870 -20.58298 -19.74773 -18.66328 -18.15922 -17.51629 -17.21425 -17.00054 -16.48483 -16.04517 -15.65401 -15.30668 -15.10183 -14.67348 -14.59330 -14.44272 -14.03340 -13.78893 -12.99153 -12.98327 -12.90373 -12.81162 -12.58946 -12.49793 -12.04499 -11.97795 -11.83309 -11.60943 -11.45377 -11.25514 -11.20804 -10.99968 -10.56954 -10.52113 -9.24642 -8.55372 -8.32185 -6.34737 0.84685 1.00379 1.43205 1.52864 1.59685 1.69352 2.27452 2.49847 2.82259 2.89849 3.71543 3.82214 3.96091 3.98802 3.99814 4.07660 4.15894 4.33216 4.37339 4.57712 4.62834 4.67310 4.73981 4.81067 5.03884 5.14162 5.14924 5.18746 5.24642 5.31989 5.45956 5.52088 5.53203 5.95382 6.23500 6.35112 6.55954 6.59567 6.78995 6.97740 7.29611 7.42012 8.28023 8.50577 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.004155 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.625972 B = 6738.017509 C = 7012.304982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.081 4.081 4 H 0.097 0.903 5 C -0.147 4.147 6 C 0.146 3.854 7 H 0.098 0.902 8 N -0.713 5.713 9 C -0.008 4.008 10 C 0.079 3.921 11 N -0.503 5.503 12 C 0.337 3.663 13 C -0.457 4.457 14 H 0.081 0.919 15 C 0.027 3.973 16 N -0.762 5.762 17 Si 0.995 3.005 18 H -0.260 1.260 19 H -0.261 1.261 20 H -0.265 1.265 21 N -0.588 5.588 22 C 0.087 3.913 23 C 0.499 3.501 24 N -0.840 5.840 25 O -0.583 6.583 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.400 0.600 35 H 0.144 0.856 36 H 0.279 0.721 37 H 0.161 0.839 38 H 0.415 0.585 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.883 -8.412 -3.870 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.100 4.100 4 H 0.116 0.884 5 C -0.205 4.205 6 C 0.035 3.965 7 H 0.116 0.884 8 N -0.349 5.349 9 C -0.114 4.114 10 C -0.097 4.097 11 N -0.220 5.220 12 C 0.094 3.906 13 C -0.494 4.494 14 H 0.099 0.901 15 C -0.194 4.194 16 N -0.387 5.387 17 Si 0.814 3.186 18 H -0.183 1.183 19 H -0.185 1.185 20 H -0.189 1.189 21 N -0.307 5.307 22 C -0.086 4.086 23 C 0.283 3.717 24 N -0.406 5.406 25 O -0.462 6.462 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.237 0.763 35 H 0.161 0.839 36 H 0.090 0.910 37 H 0.178 0.822 38 H 0.246 0.754 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.751 -8.016 -3.810 17.215 hybrid contribution -0.126 -0.170 -0.518 0.560 sum -14.876 -8.186 -4.328 17.523 Atomic orbital electron populations 1.21770 0.94355 1.02378 1.02165 1.21698 0.97354 0.93967 1.03222 1.21341 0.89548 0.99193 0.99964 0.88444 1.21885 1.02276 1.00118 0.96185 1.20930 0.95877 0.84628 0.95028 0.88410 1.43322 1.20161 1.05946 1.65424 1.19190 0.91879 0.95719 1.04579 1.22992 0.91767 0.98018 0.96923 1.69175 1.13058 1.21478 1.18253 1.20143 0.94479 0.83296 0.92695 1.19389 1.01618 0.95406 1.33024 0.90088 1.26888 1.03104 0.93923 0.95522 1.70213 1.36529 1.00406 1.31538 0.84985 0.75784 0.79651 0.78140 1.18332 1.18543 1.18939 1.68538 1.08371 1.36890 1.16934 1.22764 0.93359 0.94463 0.98035 1.21928 0.77134 0.83113 0.89556 1.43883 1.69334 1.06872 1.20462 1.90695 1.50526 1.63988 1.40958 0.92307 0.92541 0.91697 0.91295 0.90134 0.93341 0.94075 0.90118 0.76336 0.83864 0.91016 0.82232 0.75378 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.67 71.98 0.70 -0.93 16 2 C -0.12 -1.61 4.68 30.59 0.14 -1.47 16 3 C -0.08 -1.47 2.32 -10.79 -0.03 -1.49 16 4 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 5 C -0.15 -2.86 8.41 71.98 0.61 -2.26 16 6 C 0.15 3.77 1.88 44.24 0.08 3.85 16 7 H 0.10 2.42 6.52 -2.38 -0.02 2.40 16 8 N -0.71 -23.32 4.77 -321.25 -1.53 -24.85 16 9 C -0.01 -0.33 6.69 38.93 0.26 -0.07 16 10 C 0.08 3.80 10.43 85.17 0.89 4.68 16 11 N -0.50 -29.03 7.84 -193.43 -1.52 -30.54 16 12 C 0.34 20.33 7.35 134.95 0.99 21.32 16 13 C -0.46 -27.05 9.35 23.42 0.22 -26.84 16 14 H 0.08 4.69 7.85 -2.91 -0.02 4.67 16 15 C 0.03 1.43 5.50 85.30 0.47 1.90 16 16 N -0.76 -42.11 11.41 21.84 0.25 -41.86 16 17 Si 0.99 40.08 29.56 68.60 2.03 42.11 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 21 N -0.59 -33.00 10.34 -193.42 -2.00 -35.00 16 22 C 0.09 4.12 11.20 85.17 0.95 5.07 16 23 C 0.50 14.36 5.50 87.66 0.48 14.85 16 24 N -0.84 -16.40 7.71 -173.53 -1.34 -17.73 16 25 O -0.58 -22.76 16.84 -3.05 -0.05 -22.81 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.63 6.57 -2.38 -0.02 0.61 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.90 6.69 -2.38 -0.02 0.89 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 1.04 6.75 -2.39 -0.02 1.02 16 32 H 0.04 0.95 6.75 -2.39 -0.02 0.94 16 33 H 0.08 1.20 6.57 -2.39 -0.02 1.19 16 34 H 0.40 11.83 7.18 -92.71 -0.67 11.16 16 35 H 0.14 5.98 6.35 -2.91 -0.02 5.96 16 36 H 0.28 13.74 8.29 -92.71 -0.77 12.97 16 37 H 0.16 6.23 8.06 -2.91 -0.02 6.21 16 38 H 0.41 5.38 8.44 -92.71 -0.78 4.60 16 39 H 0.40 7.16 8.93 -92.71 -0.83 6.33 16 Total: -1.00 -78.13 320.29 0.45 -77.68 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -1.16 Total: 34.40 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 5.77 Total: 18.62 kcal Atomic # 7 Polarization: -143.86 SS G_CDS: -6.14 Total: -149.99 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -78.13 0.45 -77.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169155850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.746 kcal (2) G-P(sol) polarization free energy of solvation -78.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds