Wall clock time and date at job start Tue Mar 31 2020 00:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46920 * 2 1 4 4 N 1.32154 * 120.53880 * 96.15996 * 3 2 1 5 5 C 1.31857 * 120.96988 * 179.97438 * 4 3 2 6 6 N 1.31886 * 122.09536 * 0.02562 * 5 4 3 7 7 C 1.32131 * 120.96605 * 359.97438 * 6 5 4 8 8 C 1.39932 * 120.53417 * 276.13195 * 3 2 1 9 9 C 1.47827 * 120.94116 * 0.04970 * 8 3 2 10 10 O 1.21547 * 120.00351 * 5.80073 * 9 8 3 11 11 N 1.34785 * 119.99948 * 185.80222 * 9 8 3 12 12 C 1.46498 * 119.99954 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46784 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46499 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.46831 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00175 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99907 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00052 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00099 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00008 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47546 * 89.99903 * 20 18 16 22 22 H 1.48501 * 109.46940 * 209.99794 * 20 18 16 23 23 H 1.48500 * 109.47245 * 329.99708 * 20 18 16 24 24 H 1.09000 * 109.46830 * 300.00248 * 1 2 3 25 25 H 1.09001 * 109.46902 * 59.99761 * 1 2 3 26 26 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 239.99752 * 2 1 3 28 28 H 1.09001 * 109.46902 * 120.00239 * 2 1 3 29 29 H 1.07996 * 118.95044 * 180.27895 * 5 4 3 30 30 H 1.07992 * 120.54055 * 180.02562 * 7 6 5 31 31 H 0.96997 * 119.99903 * 359.97438 * 11 9 8 32 32 H 1.08999 * 109.47340 * 299.99914 * 12 11 9 33 33 H 1.09003 * 109.46942 * 59.99779 * 12 11 9 34 34 H 1.08994 * 109.47176 * 299.99595 * 13 12 11 35 35 H 1.09000 * 109.47024 * 60.00097 * 13 12 11 36 36 H 1.08999 * 109.47521 * 299.99912 * 14 13 12 37 37 H 1.09000 * 109.47363 * 60.00353 * 14 13 12 38 38 H 0.97001 * 119.99556 * 0.02562 * 15 14 13 39 39 H 0.97000 * 120.00196 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3713 2.0132 1.1316 5 6 2.8122 3.2559 1.1415 6 7 2.9361 3.9642 0.0359 7 6 2.6200 3.4505 -1.1397 8 6 2.1479 2.1340 -1.1984 9 6 1.7808 1.5151 -2.4896 10 8 1.2734 0.4108 -2.5119 11 7 2.0087 2.1753 -3.6424 12 6 1.6444 1.5621 -4.9221 13 6 2.0058 2.5134 -6.0646 14 6 1.6258 1.8727 -7.4010 15 7 1.9713 2.7839 -8.4951 16 6 1.7221 2.4220 -9.7920 17 1 1.2704 1.4652 -10.0084 18 6 2.0499 3.2851 -10.8286 19 7 1.8098 2.9376 -12.0752 20 14 2.8317 4.9398 -10.4543 21 1 4.3097 4.7966 -10.4376 22 1 2.4412 5.9195 -11.4997 23 1 2.3658 5.4188 -9.1282 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.0844 3.7065 2.0844 30 1 2.7245 4.0366 -2.0407 31 1 2.4133 3.0567 -3.6247 32 1 2.1874 0.6249 -5.0436 33 1 0.5723 1.3656 -4.9386 34 1 1.4624 3.4504 -5.9429 35 1 3.0777 2.7103 -6.0481 36 1 2.1696 0.9359 -7.5225 37 1 0.5540 1.6755 -7.4178 38 1 2.3773 3.6431 -8.3007 39 1 2.0393 3.5405 -12.7996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176233969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:15 Heat of formation + Delta-G solvation = 18.581859 kcal Electronic energy + Delta-G solvation = -20601.810323 eV Core-core repulsion = 17351.864591 eV Total energy + Delta-G solvation = -3249.945732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76535 -39.62667 -36.50465 -35.44848 -34.49371 -33.42778 -32.20308 -31.29942 -29.93499 -26.37862 -25.38036 -24.91839 -22.54435 -22.12158 -21.49344 -20.91418 -18.36270 -18.09185 -17.47471 -17.20909 -16.07000 -15.94505 -15.36951 -14.89040 -14.53406 -14.38857 -14.38055 -14.22784 -13.78531 -13.47931 -12.86277 -12.85177 -12.66408 -12.09880 -12.06997 -11.85213 -11.33552 -11.26431 -11.10165 -11.04302 -10.87488 -10.76970 -10.20901 -10.09311 -9.96651 -9.73935 -9.63470 -9.27780 -8.94759 -7.29237 -5.80703 -3.17286 -0.00825 0.54904 2.49448 2.76505 3.32985 3.33774 3.35323 3.41720 3.54259 3.57936 3.86803 4.24837 4.42077 4.54805 4.74125 4.86524 4.92226 5.09574 5.10531 5.13874 5.38471 5.41490 5.49389 5.67838 5.72009 5.75797 5.82773 5.85799 5.91530 6.00651 6.06491 6.21795 6.43711 6.61346 6.64487 7.12963 7.53647 7.83772 7.94956 8.37952 9.16413 9.88413 10.07455 11.37601 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030403 B = 0.002914 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.754833 B = 9607.227784 C =10428.120981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C 0.239 3.761 4 N -0.524 5.524 5 C 0.317 3.683 6 N -0.527 5.527 7 C 0.185 3.815 8 C -0.243 4.243 9 C 0.565 3.435 10 O -0.519 6.519 11 N -0.721 5.721 12 C 0.123 3.877 13 C -0.143 4.143 14 C 0.161 3.839 15 N -0.757 5.757 16 C -0.247 4.247 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.887 3.113 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.278 1.278 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.202 0.798 30 H 0.172 0.828 31 H 0.398 0.602 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.361 0.639 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -0.572 27.978 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 C 0.092 3.908 4 N -0.237 5.237 5 C 0.030 3.970 6 N -0.241 5.241 7 C 0.018 3.982 8 C -0.251 4.251 9 C 0.350 3.650 10 O -0.397 6.397 11 N -0.372 5.372 12 C 0.000 4.000 13 C -0.182 4.182 14 C 0.033 3.967 15 N -0.403 5.403 16 C -0.377 4.377 17 H 0.109 0.891 18 C -0.192 4.192 19 N -0.581 5.581 20 Si 0.717 3.283 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.218 0.782 30 H 0.189 0.811 31 H 0.233 0.767 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.193 0.807 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.103 -1.091 28.608 28.650 hybrid contribution 0.651 1.554 -0.664 1.811 sum 1.754 0.462 27.944 28.003 Atomic orbital electron populations 1.21569 0.92980 1.02715 1.01803 1.20859 0.97564 0.88802 1.04940 1.22069 0.85615 0.96682 0.86395 1.68430 1.13620 1.12105 1.29579 1.25266 0.88182 0.86357 0.97194 1.68463 1.18010 1.38444 0.99146 1.23506 0.87058 0.90924 0.96707 1.21669 1.08943 0.97924 0.96563 1.17715 0.78986 0.85299 0.82985 1.90761 1.42899 1.19129 1.86879 1.45981 1.63510 1.21431 1.06270 1.21417 1.01315 0.96805 0.80451 1.22017 1.02123 0.99123 0.94912 1.20490 0.98032 0.93225 0.84949 1.42683 1.76080 1.18496 1.03011 1.19063 1.34579 1.03033 0.81000 0.89131 1.24695 1.01178 0.98266 0.95062 1.69702 1.53293 1.37150 0.97959 0.86517 0.79496 0.85125 0.77160 1.21056 1.21675 1.20393 0.93261 0.91775 0.91458 0.86963 0.90120 0.78164 0.81123 0.76672 0.90720 0.90730 0.91233 0.91232 0.95116 0.95170 0.80682 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.51 37.16 0.35 -0.85 16 2 C -0.08 -0.79 5.49 -27.88 -0.15 -0.94 16 3 C 0.24 2.42 6.12 -81.82 -0.50 1.92 16 4 N -0.52 -5.10 10.36 -10.48 -0.11 -5.21 16 5 C 0.32 2.60 12.27 -92.02 -1.13 1.47 16 6 N -0.53 -4.72 10.42 -14.24 -0.15 -4.86 16 7 C 0.19 1.52 10.80 -16.77 -0.18 1.34 16 8 C -0.24 -2.34 5.91 -104.69 -0.62 -2.96 16 9 C 0.56 6.07 7.73 -12.33 -0.10 5.98 16 10 O -0.52 -6.80 12.03 5.32 0.06 -6.74 16 11 N -0.72 -6.76 5.51 -61.25 -0.34 -7.10 16 12 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 13 C -0.14 -1.84 5.44 -26.73 -0.15 -1.99 16 14 C 0.16 2.89 6.26 -4.04 -0.03 2.87 16 15 N -0.76 -17.49 5.41 -59.91 -0.32 -17.82 16 16 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 18 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 19 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 20 Si 0.89 21.69 27.74 -169.99 -4.71 16.98 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.68 6.89 -51.93 -0.36 0.32 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.11 1.18 5.94 -51.93 -0.31 0.87 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.20 0.93 8.06 -52.49 -0.42 0.50 16 30 H 0.17 0.89 6.58 -52.49 -0.35 0.54 16 31 H 0.40 2.73 6.64 -40.82 -0.27 2.46 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.36 8.01 5.53 -40.82 -0.23 7.78 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -33.82 326.63 -7.97 -41.79 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.33 Total: 5.36 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.77 Total: 1.09 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.14 Total: -63.40 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.06 Total: -6.74 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.82 -7.97 -41.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176233969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.370 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds