Wall clock time and date at job start Tue Mar 31 2020 00:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46920 * 2 1 4 4 N 1.32154 * 120.53880 * 96.15996 * 3 2 1 5 5 C 1.31857 * 120.96988 * 179.97438 * 4 3 2 6 6 N 1.31886 * 122.09536 * 0.02562 * 5 4 3 7 7 C 1.32131 * 120.96605 * 359.97438 * 6 5 4 8 8 C 1.39932 * 120.53417 * 276.13195 * 3 2 1 9 9 C 1.47827 * 120.94116 * 0.04970 * 8 3 2 10 10 O 1.21547 * 120.00351 * 5.80073 * 9 8 3 11 11 N 1.34785 * 119.99948 * 185.80222 * 9 8 3 12 12 C 1.46498 * 119.99954 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46784 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46499 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.46831 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00175 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99907 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00052 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00099 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00008 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47546 * 89.99903 * 20 18 16 22 22 H 1.48501 * 109.46940 * 209.99794 * 20 18 16 23 23 H 1.48500 * 109.47245 * 329.99708 * 20 18 16 24 24 H 1.09000 * 109.46830 * 300.00248 * 1 2 3 25 25 H 1.09001 * 109.46902 * 59.99761 * 1 2 3 26 26 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 239.99752 * 2 1 3 28 28 H 1.09001 * 109.46902 * 120.00239 * 2 1 3 29 29 H 1.07996 * 118.95044 * 180.27895 * 5 4 3 30 30 H 1.07992 * 120.54055 * 180.02562 * 7 6 5 31 31 H 0.96997 * 119.99903 * 359.97438 * 11 9 8 32 32 H 1.08999 * 109.47340 * 299.99914 * 12 11 9 33 33 H 1.09003 * 109.46942 * 59.99779 * 12 11 9 34 34 H 1.08994 * 109.47176 * 299.99595 * 13 12 11 35 35 H 1.09000 * 109.47024 * 60.00097 * 13 12 11 36 36 H 1.08999 * 109.47521 * 299.99912 * 14 13 12 37 37 H 1.09000 * 109.47363 * 60.00353 * 14 13 12 38 38 H 0.97001 * 119.99556 * 0.02562 * 15 14 13 39 39 H 0.97000 * 120.00196 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3713 2.0132 1.1316 5 6 2.8122 3.2559 1.1415 6 7 2.9361 3.9642 0.0359 7 6 2.6200 3.4505 -1.1397 8 6 2.1479 2.1340 -1.1984 9 6 1.7808 1.5151 -2.4896 10 8 1.2734 0.4108 -2.5119 11 7 2.0087 2.1753 -3.6424 12 6 1.6444 1.5621 -4.9221 13 6 2.0058 2.5134 -6.0646 14 6 1.6258 1.8727 -7.4010 15 7 1.9713 2.7839 -8.4951 16 6 1.7221 2.4220 -9.7920 17 1 1.2704 1.4652 -10.0084 18 6 2.0499 3.2851 -10.8286 19 7 1.8098 2.9376 -12.0752 20 14 2.8317 4.9398 -10.4543 21 1 4.3097 4.7966 -10.4376 22 1 2.4412 5.9195 -11.4997 23 1 2.3658 5.4188 -9.1282 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.0844 3.7065 2.0844 30 1 2.7245 4.0366 -2.0407 31 1 2.4133 3.0567 -3.6247 32 1 2.1874 0.6249 -5.0436 33 1 0.5723 1.3656 -4.9386 34 1 1.4624 3.4504 -5.9429 35 1 3.0777 2.7103 -6.0481 36 1 2.1696 0.9359 -7.5225 37 1 0.5540 1.6755 -7.4178 38 1 2.3773 3.6431 -8.3007 39 1 2.0393 3.5405 -12.7996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176233969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:14 Heat of formation + Delta-G solvation = -5.524484 kcal Electronic energy + Delta-G solvation = -20602.855652 eV Core-core repulsion = 17351.864591 eV Total energy + Delta-G solvation = -3250.991061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44817 -40.44442 -37.70752 -36.49006 -35.62456 -34.26024 -33.75477 -32.37815 -31.25956 -27.51940 -26.06420 -26.04964 -24.03488 -23.00135 -22.61302 -21.94636 -19.73642 -19.00928 -18.67342 -17.88236 -16.96079 -16.93139 -16.49604 -16.22072 -15.78395 -15.34689 -15.21972 -15.14800 -14.90360 -14.80305 -14.29409 -13.90739 -13.76347 -13.53884 -12.88004 -12.78991 -12.58220 -12.52637 -12.48390 -12.14876 -12.00696 -11.94706 -11.80049 -11.72261 -10.97008 -10.83655 -10.79013 -10.40668 -10.11022 -9.30835 -8.02709 -5.37598 -0.67707 -0.11764 1.39062 1.44431 1.51804 1.71807 1.94700 2.49823 2.66174 2.90277 3.02511 3.23593 3.28732 3.51969 3.59779 3.72556 4.10656 4.17318 4.23460 4.25853 4.31137 4.38025 4.47131 4.71570 4.74108 4.74550 4.90284 5.00735 5.08142 5.20256 5.22324 5.30911 5.31282 5.41781 5.75609 5.77817 6.20989 6.39078 6.89258 7.06603 7.08265 7.83064 8.03340 9.18849 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030403 B = 0.002914 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.754833 B = 9607.227784 C =10428.120981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C 0.227 3.773 4 N -0.538 5.538 5 C 0.317 3.683 6 N -0.538 5.538 7 C 0.193 3.807 8 C -0.254 4.254 9 C 0.566 3.434 10 O -0.548 6.548 11 N -0.709 5.709 12 C 0.133 3.867 13 C -0.125 4.125 14 C 0.153 3.847 15 N -0.759 5.759 16 C -0.241 4.241 17 H 0.053 0.947 18 C -0.069 4.069 19 N -0.986 5.986 20 Si 0.962 3.038 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.244 1.244 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.201 0.799 31 H 0.413 0.587 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.369 0.631 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 1.525 30.337 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 C 0.081 3.919 4 N -0.252 5.252 5 C 0.031 3.969 6 N -0.252 5.252 7 C 0.025 3.975 8 C -0.262 4.262 9 C 0.352 3.648 10 O -0.427 6.427 11 N -0.361 5.361 12 C 0.009 3.991 13 C -0.163 4.163 14 C 0.027 3.973 15 N -0.405 5.405 16 C -0.372 4.372 17 H 0.071 0.929 18 C -0.260 4.260 19 N -0.636 5.636 20 Si 0.789 3.211 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.168 1.168 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.249 0.751 30 H 0.218 0.782 31 H 0.251 0.749 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.202 0.798 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.146 1.014 31.036 31.126 hybrid contribution 0.290 0.797 -1.360 1.603 sum 2.435 1.812 29.676 29.830 Atomic orbital electron populations 1.21506 0.92884 1.03029 1.01036 1.20805 0.97604 0.88889 1.04655 1.22198 0.85782 0.96974 0.86955 1.68479 1.14403 1.12933 1.29402 1.25943 0.86810 0.85826 0.98307 1.68572 1.18505 1.38583 0.99525 1.23968 0.85494 0.90369 0.97627 1.21567 1.10233 0.98700 0.95684 1.17875 0.78450 0.84942 0.83532 1.90756 1.44226 1.20452 1.87290 1.45760 1.63209 1.21945 1.05194 1.21154 1.00857 0.96274 0.80784 1.21789 1.03122 0.99300 0.92102 1.20667 0.97634 0.92771 0.86255 1.42664 1.76032 1.19608 1.02210 1.19047 1.33095 1.01525 0.83512 0.92888 1.25632 1.02571 1.03090 0.94682 1.69905 1.55427 1.38987 0.99327 0.85305 0.78467 0.79140 0.78219 1.20263 1.22455 1.16823 0.92858 0.93506 0.90662 0.88264 0.89280 0.75092 0.78208 0.74902 0.91369 0.91392 0.89860 0.89814 0.95605 0.95685 0.79756 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.51 71.98 0.68 -1.58 16 2 C -0.08 -1.51 5.49 29.85 0.16 -1.34 16 3 C 0.23 4.35 6.12 42.92 0.26 4.61 16 4 N -0.54 -9.62 10.36 -187.06 -1.94 -11.56 16 5 C 0.32 4.45 12.27 180.84 2.22 6.67 16 6 N -0.54 -8.18 10.42 -198.97 -2.07 -10.25 16 7 C 0.19 2.63 10.80 85.07 0.92 3.54 16 8 C -0.25 -4.47 5.91 -19.91 -0.12 -4.59 16 9 C 0.57 11.37 7.73 86.78 0.67 12.04 16 10 O -0.55 -14.16 12.03 -3.86 -0.05 -14.21 16 11 N -0.71 -11.54 5.51 -465.98 -2.57 -14.11 16 12 C 0.13 2.73 5.67 86.38 0.49 3.22 16 13 C -0.13 -2.84 5.44 30.60 0.17 -2.67 16 14 C 0.15 5.32 6.26 86.38 0.54 5.86 16 15 N -0.76 -33.93 5.41 -343.45 -1.86 -35.79 16 16 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 17 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 19 N -0.99 -63.16 13.97 21.65 0.30 -62.86 16 20 Si 0.96 44.00 27.74 68.60 1.90 45.90 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.24 -9.70 6.52 99.48 0.65 -9.05 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 1.00 6.89 -2.39 -0.02 0.98 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 2.10 5.94 -2.39 -0.01 2.09 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.23 1.46 8.06 -2.91 -0.02 1.43 16 30 H 0.20 1.31 6.58 -2.91 -0.02 1.29 16 31 H 0.41 4.17 6.64 -92.71 -0.62 3.55 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.37 15.19 5.53 -92.71 -0.51 14.68 16 39 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -74.32 326.63 0.96 -73.36 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.11 Total: 20.06 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 7.35 Total: 9.44 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -8.14 Total: -134.57 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.05 Total: -14.21 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Total: -74.32 0.96 -73.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176233969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.840 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds