Wall clock time and date at job start Tue Mar 31 2020 00:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21484 * 119.99968 * 0.02562 * 14 13 3 16 16 C 1.48465 * 120.00151 * 179.97438 * 14 13 3 17 17 C 1.39507 * 120.50299 * 179.97438 * 16 14 13 18 18 C 1.38778 * 118.42505 * 179.97438 * 17 16 14 19 19 N 1.32140 * 119.24306 * 0.02562 * 18 17 16 20 20 C 1.32567 * 120.96059 * 359.97438 * 19 18 17 21 21 N 1.38427 * 119.14098 * 179.97438 * 20 19 18 22 22 C 1.46502 * 119.99597 * 0.02562 * 21 20 19 23 23 C 1.46504 * 120.00070 * 180.02562 * 21 20 19 24 24 N 1.32290 * 121.72234 * 359.74440 * 20 19 18 25 25 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 27 27 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 28 28 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 29 29 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 32 32 H 1.08001 * 120.79450 * 0.02562 * 17 16 14 33 33 H 1.07994 * 120.38195 * 179.97438 * 18 17 16 34 34 H 1.09006 * 109.46911 * 90.00581 * 22 21 20 35 35 H 1.09006 * 109.47038 * 209.99454 * 22 21 20 36 36 H 1.09000 * 109.47433 * 330.00008 * 22 21 20 37 37 H 1.08996 * 109.46937 * 90.00312 * 23 21 20 38 38 H 1.09006 * 109.46507 * 210.00122 * 23 21 20 39 39 H 1.08992 * 109.46893 * 329.99385 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5967 0.1454 -0.2346 11 1 6.3978 0.2158 -2.6500 12 1 6.5003 2.2801 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3409 2.6318 0.4330 16 6 0.0423 3.3276 2.6358 17 6 -1.2149 3.9182 2.7664 18 6 -1.5374 4.5258 3.9717 19 7 -0.6508 4.5271 4.9515 20 6 0.5364 3.9575 4.7977 21 7 1.4367 3.9814 5.8490 22 6 1.0720 4.6299 7.1110 23 6 2.7541 3.3582 5.6995 24 7 0.8815 3.3630 3.6675 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0609 -2.9501 31 1 2.2720 2.1231 1.9977 32 1 -1.9208 3.9022 1.9491 33 1 -2.5016 4.9930 4.1070 34 1 0.6004 3.9015 7.7708 35 1 1.9685 5.0255 7.5886 36 1 0.3760 5.4450 6.9129 37 1 3.4621 4.0928 5.3157 38 1 3.0965 2.9954 6.6687 39 1 2.6839 2.5228 5.0030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188011386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:14 Heat of formation + Delta-G solvation = 27.602226 kcal Electronic energy + Delta-G solvation = -21752.440674 eV Core-core repulsion = 18502.886095 eV Total energy + Delta-G solvation = -3249.554579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.99221 -38.85968 -36.67636 -35.10433 -33.79480 -32.27935 -31.18894 -30.77872 -28.36397 -27.13433 -25.71790 -24.96690 -23.07810 -22.16270 -20.51863 -19.41177 -18.21385 -17.59468 -16.53293 -15.80369 -15.69545 -15.32176 -15.05650 -14.66476 -14.53737 -14.24541 -13.93880 -13.72691 -13.11282 -12.68336 -12.67876 -12.39222 -12.09475 -12.06592 -11.54122 -11.25262 -11.00342 -10.94228 -10.83319 -10.64934 -10.35443 -10.22346 -10.15025 -9.70687 -9.56430 -9.06409 -8.92191 -8.50090 -7.94544 -7.84270 -6.12151 -4.21376 0.85058 1.24201 2.60113 3.26523 3.31630 3.32647 3.36096 3.76299 4.17924 4.19765 4.36171 4.54971 5.00827 5.07745 5.19027 5.19836 5.24606 5.28515 5.48199 5.57161 5.65161 5.80908 5.89229 6.26741 6.38621 6.45081 6.64301 6.70838 6.82682 7.03739 7.17207 7.31369 7.35493 7.39878 7.61660 7.72703 7.88280 8.16177 8.22780 8.63514 8.74645 9.04328 9.45345 10.93266 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.004944 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.789447 B = 5662.355805 C = 6746.734631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.267 3.733 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.551 3.449 15 O -0.533 6.533 16 C 0.188 3.812 17 C -0.240 4.240 18 C 0.187 3.813 19 N -0.564 5.564 20 C 0.558 3.442 21 N -0.596 5.596 22 C 0.105 3.895 23 C 0.101 3.899 24 N -0.544 5.544 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.399 0.601 32 H 0.155 0.845 33 H 0.172 0.828 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 6.487 15.550 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.325 5.325 14 C 0.332 3.668 15 O -0.410 6.410 16 C 0.038 3.962 17 C -0.266 4.266 18 C 0.019 3.981 19 N -0.287 5.287 20 C 0.202 3.798 21 N -0.314 5.314 22 C -0.038 4.038 23 C -0.042 4.042 24 N -0.269 5.269 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.233 0.767 32 H 0.173 0.827 33 H 0.189 0.811 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.777 6.327 15.548 17.452 hybrid contribution 0.695 -0.016 -0.345 0.776 sum -4.082 6.310 15.203 16.960 Atomic orbital electron populations 1.21851 0.98348 0.98204 1.01164 1.21941 0.92616 0.99591 1.02475 1.18914 0.94508 0.89315 0.80656 0.93020 1.21174 0.90517 1.39160 1.06370 0.92017 1.24868 0.98626 0.94750 0.95320 1.69885 1.35227 1.37535 1.09334 0.86502 0.84814 0.78317 0.77435 1.20143 1.21135 1.20189 1.46445 1.13945 1.53318 1.18803 1.17800 0.83701 0.80005 0.85255 1.90763 1.51750 1.60084 1.38433 1.21860 0.90052 0.91737 0.92513 1.22602 0.98941 1.04011 1.01054 1.22949 0.97118 0.90924 0.87089 1.67765 1.02949 1.23678 1.34294 1.19139 0.86286 0.88070 0.86333 1.45834 1.14200 1.60231 1.11097 1.21583 1.00934 0.97678 0.83584 1.21664 0.81708 0.98577 1.02280 1.67842 1.36410 1.22432 1.00224 0.95691 0.94465 0.93003 0.88070 0.94897 0.92486 0.76689 0.82701 0.81136 0.93233 0.91460 0.90272 0.92843 0.91420 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.49 11.30 55.43 0.63 -23.87 16 9 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.68 -14.74 5.01 -55.68 -0.28 -15.02 16 14 C 0.55 11.47 6.40 -12.04 -0.08 11.39 16 15 O -0.53 -12.29 13.55 5.38 0.07 -12.22 16 16 C 0.19 3.31 6.79 -82.66 -0.56 2.75 16 17 C -0.24 -3.50 9.71 -38.91 -0.38 -3.88 16 18 C 0.19 2.29 11.30 -17.22 -0.19 2.10 16 19 N -0.56 -7.82 9.09 -13.94 -0.13 -7.94 16 20 C 0.56 8.37 8.17 -322.94 -2.64 5.73 16 21 N -0.60 -7.30 3.37 -191.92 -0.65 -7.95 16 22 C 0.11 0.94 10.44 59.85 0.62 1.57 16 23 C 0.10 1.06 10.44 59.85 0.62 1.69 16 24 N -0.54 -9.09 8.37 -10.49 -0.09 -9.17 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 28 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.40 8.07 7.92 -40.82 -0.32 7.75 16 32 H 0.16 2.12 7.73 -52.49 -0.41 1.71 16 33 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 36 H 0.08 0.75 7.33 -51.93 -0.38 0.37 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.08 1.03 7.33 -51.93 -0.38 0.65 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -30.56 325.17 -8.93 -39.49 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.39 Total: 7.01 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -2.98 Total: 9.24 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.52 Total: -63.94 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.56 -8.93 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188011386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.092 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds