Wall clock time and date at job start Tue Mar 31 2020 00:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21484 * 119.99968 * 0.02562 * 14 13 3 16 16 C 1.48465 * 120.00151 * 179.97438 * 14 13 3 17 17 C 1.39507 * 120.50299 * 179.97438 * 16 14 13 18 18 C 1.38778 * 118.42505 * 179.97438 * 17 16 14 19 19 N 1.32140 * 119.24306 * 0.02562 * 18 17 16 20 20 C 1.32567 * 120.96059 * 359.97438 * 19 18 17 21 21 N 1.38427 * 119.14098 * 179.97438 * 20 19 18 22 22 C 1.46502 * 119.99597 * 0.02562 * 21 20 19 23 23 C 1.46504 * 120.00070 * 180.02562 * 21 20 19 24 24 N 1.32290 * 121.72234 * 359.74440 * 20 19 18 25 25 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 27 27 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 28 28 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 29 29 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 32 32 H 1.08001 * 120.79450 * 0.02562 * 17 16 14 33 33 H 1.07994 * 120.38195 * 179.97438 * 18 17 16 34 34 H 1.09006 * 109.46911 * 90.00581 * 22 21 20 35 35 H 1.09006 * 109.47038 * 209.99454 * 22 21 20 36 36 H 1.09000 * 109.47433 * 330.00008 * 22 21 20 37 37 H 1.08996 * 109.46937 * 90.00312 * 23 21 20 38 38 H 1.09006 * 109.46507 * 210.00122 * 23 21 20 39 39 H 1.08992 * 109.46893 * 329.99385 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5967 0.1454 -0.2346 11 1 6.3978 0.2158 -2.6500 12 1 6.5003 2.2801 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3409 2.6318 0.4330 16 6 0.0423 3.3276 2.6358 17 6 -1.2149 3.9182 2.7664 18 6 -1.5374 4.5258 3.9717 19 7 -0.6508 4.5271 4.9515 20 6 0.5364 3.9575 4.7977 21 7 1.4367 3.9814 5.8490 22 6 1.0720 4.6299 7.1110 23 6 2.7541 3.3582 5.6995 24 7 0.8815 3.3630 3.6675 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0609 -2.9501 31 1 2.2720 2.1231 1.9977 32 1 -1.9208 3.9022 1.9491 33 1 -2.5016 4.9930 4.1070 34 1 0.6004 3.9015 7.7708 35 1 1.9685 5.0255 7.5886 36 1 0.3760 5.4450 6.9129 37 1 3.4621 4.0928 5.3157 38 1 3.0965 2.9954 6.6687 39 1 2.6839 2.5228 5.0030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188011386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:13 Heat of formation + Delta-G solvation = 9.231382 kcal Electronic energy + Delta-G solvation = -21753.237294 eV Core-core repulsion = 18502.886095 eV Total energy + Delta-G solvation = -3250.351199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.16130 -40.49633 -37.66987 -36.96351 -35.04011 -34.18255 -32.72778 -32.18774 -29.31199 -28.93170 -26.69983 -26.33708 -24.89577 -23.36002 -22.06536 -21.24742 -19.72323 -18.70850 -18.16848 -17.18229 -17.06616 -16.86425 -16.35919 -16.20142 -16.05766 -15.37660 -15.16326 -14.85177 -14.65088 -14.54927 -13.86716 -13.50239 -13.39791 -13.18156 -13.15061 -12.93253 -12.84199 -12.66333 -12.21200 -12.09498 -12.06568 -11.83386 -11.61225 -11.26420 -11.21340 -11.08072 -10.54047 -10.18643 -9.71548 -8.89588 -8.16356 -6.33636 -0.40550 0.18158 1.45214 1.47007 1.54825 1.66433 1.88108 2.22857 2.46668 2.92781 3.06990 3.13166 3.51123 3.80104 4.06058 4.24860 4.42089 4.47394 4.48170 4.55289 4.55337 4.70771 4.78502 4.81509 4.96065 4.98834 5.04435 5.23340 5.24758 5.40736 5.49355 5.57755 5.70275 5.78036 5.84217 5.90991 6.13740 6.30738 6.71047 6.83435 7.15887 7.27251 7.42917 8.88919 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.004944 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.789447 B = 5662.355805 C = 6746.734631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.276 3.724 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.680 5.680 14 C 0.551 3.449 15 O -0.562 6.562 16 C 0.164 3.836 17 C -0.240 4.240 18 C 0.206 3.794 19 N -0.561 5.561 20 C 0.542 3.458 21 N -0.596 5.596 22 C 0.103 3.897 23 C 0.098 3.902 24 N -0.563 5.563 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.161 0.839 33 H 0.221 0.779 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 7.278 18.001 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.327 5.327 14 C 0.335 3.665 15 O -0.441 6.441 16 C 0.015 3.985 17 C -0.267 4.267 18 C 0.037 3.963 19 N -0.284 5.284 20 C 0.186 3.814 21 N -0.313 5.313 22 C -0.039 4.039 23 C -0.044 4.044 24 N -0.289 5.289 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.179 0.821 33 H 0.238 0.762 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.644 7.126 18.056 19.959 hybrid contribution 0.598 -0.193 -1.018 1.196 sum -4.045 6.933 17.038 18.834 Atomic orbital electron populations 1.21689 0.96818 0.99417 1.00259 1.21788 0.93911 0.98811 1.01425 1.18536 0.94004 0.89401 0.80767 0.97567 1.21480 0.91214 1.39367 1.06827 0.91480 1.25717 1.03285 0.94201 0.94854 1.70027 1.37109 1.38081 1.09780 0.85435 0.79091 0.78401 0.77631 1.18996 1.20908 1.19811 1.46226 1.14822 1.53821 1.17855 1.18271 0.82756 0.79185 0.86333 1.90732 1.52356 1.61023 1.39984 1.21362 0.91762 0.93769 0.91583 1.22772 0.97740 1.03781 1.02413 1.23718 0.98259 0.89009 0.85335 1.67929 1.02714 1.23234 1.34517 1.19525 0.87256 0.88092 0.86504 1.46220 1.14101 1.59742 1.11252 1.21783 1.02259 0.97588 0.82298 1.21754 0.81207 0.97891 1.03570 1.67723 1.36750 1.23665 1.00761 0.93294 0.94315 0.94872 0.90441 0.94348 0.92450 0.75877 0.82100 0.76235 0.92323 0.88833 0.90752 0.92689 0.88298 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.05 16 2 C -0.12 -6.03 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.48 2.24 44.25 0.10 14.58 16 4 H 0.01 0.39 7.58 -2.39 -0.02 0.38 16 5 C -0.55 -29.72 8.73 25.60 0.22 -29.50 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.08 5.29 84.65 0.45 1.52 16 8 N -0.91 -51.93 11.30 21.45 0.24 -51.69 16 9 Si 0.97 42.27 29.54 68.60 2.03 44.29 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.68 -30.56 5.01 -448.38 -2.25 -32.81 16 14 C 0.55 23.63 6.40 86.97 0.56 24.19 16 15 O -0.56 -26.87 13.55 -3.66 -0.05 -26.92 16 16 C 0.16 5.76 6.79 42.00 0.29 6.05 16 17 C -0.24 -6.71 9.71 22.71 0.22 -6.49 16 18 C 0.21 4.42 11.30 84.78 0.96 5.38 16 19 N -0.56 -14.12 9.09 -198.02 -1.80 -15.92 16 20 C 0.54 15.47 8.17 261.53 2.14 17.61 16 21 N -0.60 -13.40 3.37 -761.10 -2.57 -15.96 16 22 C 0.10 1.53 10.44 127.77 1.33 2.87 16 23 C 0.10 1.92 10.44 127.77 1.33 3.25 16 24 N -0.56 -18.63 8.37 -187.10 -1.57 -20.20 16 25 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.04 1.72 5.64 -2.39 -0.01 1.71 16 27 H 0.03 1.59 7.84 -2.39 -0.02 1.58 16 28 H 0.08 4.28 5.95 -2.39 -0.01 4.26 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.41 16.93 7.92 -92.71 -0.73 16.19 16 32 H 0.16 4.23 7.73 -2.91 -0.02 4.21 16 33 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.09 0.91 8.07 -2.38 -0.02 0.90 16 36 H 0.07 1.21 7.33 -2.39 -0.02 1.19 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 1.28 8.07 -2.38 -0.02 1.26 16 39 H 0.06 1.51 7.33 -2.39 -0.02 1.49 16 Total: -1.00 -68.03 325.17 2.74 -65.29 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.33 Total: 25.38 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 8.38 Total: 28.54 kcal Atomic # 7 Polarization: -128.63 SS G_CDS: -7.94 Total: -136.57 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -68.03 2.74 -65.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188011386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.517 kcal (2) G-P(sol) polarization free energy of solvation -68.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds