Wall clock time and date at job start Tue Mar 31 2020 00:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47183 * 60.00003 * 9 7 5 11 11 H 1.48496 * 109.47283 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47136 * 299.99823 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21586 * 120.00012 * 0.02562 * 14 13 3 16 16 C 1.47556 * 119.99802 * 180.02562 * 14 13 3 17 17 C 1.40104 * 120.87068 * 359.72277 * 16 14 13 18 18 N 1.31959 * 119.01481 * 179.71545 * 17 16 14 19 19 C 1.32669 * 120.89486 * 0.57427 * 18 17 16 20 20 N 1.37935 * 119.04096 * 179.72180 * 19 18 17 21 21 C 1.46507 * 119.99885 * 179.97438 * 20 19 18 22 22 C 1.46497 * 120.00291 * 359.97438 * 20 19 18 23 23 N 1.32665 * 121.91743 * 359.69789 * 19 18 17 24 24 C 1.31965 * 120.89949 * 0.02562 * 23 19 18 25 25 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 26 26 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 28 28 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 29 29 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 30 30 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 32 32 H 1.08003 * 120.48721 * 359.97280 * 17 16 14 33 33 H 1.08999 * 109.46523 * 90.00722 * 21 20 19 34 34 H 1.09001 * 109.46991 * 209.99988 * 21 20 19 35 35 H 1.08995 * 109.47377 * 330.00322 * 21 20 19 36 36 H 1.08998 * 109.47426 * 89.99432 * 22 20 19 37 37 H 1.08997 * 109.47150 * 209.99999 * 22 20 19 38 38 H 1.09000 * 109.46768 * 329.99645 * 22 20 19 39 39 H 1.07993 * 120.49583 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1451 -0.2345 11 1 6.3978 0.2158 -2.6499 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3374 2.6411 0.4285 16 6 0.0472 3.3293 2.6258 17 6 0.9234 3.3673 3.7184 18 7 0.5390 3.9723 4.8264 19 6 -0.6619 4.5290 4.9171 20 7 -1.0264 5.1465 6.0954 21 6 -2.3471 5.7685 6.2184 22 6 -0.0929 5.1804 7.2239 23 7 -1.5221 4.5095 3.9073 24 6 -1.2116 3.9289 2.7636 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8293 -0.0617 -2.9496 31 1 2.2720 2.1230 1.9979 32 1 1.9005 2.9118 3.6534 33 1 -3.0603 5.0351 6.5947 34 1 -2.2901 6.6084 6.9108 35 1 -2.6735 6.1245 5.2413 36 1 0.5245 6.0763 7.1581 37 1 -0.6532 5.1932 8.1587 38 1 0.5447 4.2968 7.1946 39 1 -1.9170 3.9165 1.9460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189858122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:57 Heat of formation + Delta-G solvation = 24.982536 kcal Electronic energy + Delta-G solvation = -21433.360795 eV Core-core repulsion = 18183.692617 eV Total energy + Delta-G solvation = -3249.668177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.03494 -38.84654 -36.77764 -35.07717 -33.80456 -32.47665 -31.57957 -30.41571 -28.46849 -27.15452 -26.02136 -24.18797 -23.18844 -22.45113 -20.52210 -19.43223 -18.03354 -17.64002 -17.41617 -15.88434 -15.78620 -15.27621 -14.70523 -14.64886 -14.58468 -14.31090 -13.79323 -13.56144 -13.16284 -12.83258 -12.66947 -12.51627 -12.20436 -12.08230 -11.62122 -11.46605 -11.22985 -11.00109 -10.83382 -10.82534 -10.33034 -10.21960 -10.14267 -9.62500 -9.13961 -9.11779 -9.02463 -8.49995 -8.07815 -7.79486 -6.12436 -4.22116 0.87872 1.19672 2.49401 3.25870 3.31435 3.32289 3.43474 3.99109 4.15271 4.18063 4.38320 4.46523 4.70698 4.97577 5.03655 5.11477 5.15359 5.18957 5.40198 5.50715 5.58381 5.58770 5.85006 6.19104 6.40455 6.47184 6.58800 6.66634 6.77320 7.05166 7.19645 7.26444 7.36067 7.42793 7.61586 7.72320 7.89715 8.17305 8.18393 8.63174 8.76430 9.08680 9.45125 10.92809 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.003898 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.217954 B = 7181.391001 C = 7875.544306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.560 3.440 15 O -0.546 6.546 16 C -0.291 4.291 17 C 0.224 3.776 18 N -0.572 5.572 19 C 0.565 3.435 20 N -0.591 5.591 21 C 0.101 3.899 22 C 0.101 3.899 23 N -0.573 5.573 24 C 0.246 3.754 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.385 0.615 32 H 0.172 0.828 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 7.598 16.193 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.344 3.656 15 O -0.426 6.426 16 C -0.303 4.303 17 C 0.055 3.945 18 N -0.294 5.294 19 C 0.210 3.790 20 N -0.307 5.307 21 C -0.042 4.042 22 C -0.042 4.042 23 N -0.295 5.295 24 C 0.077 3.923 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.218 0.782 32 H 0.189 0.811 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.974 8.023 16.384 19.909 hybrid contribution 1.605 -0.456 -0.475 1.735 sum -6.368 7.567 15.908 18.732 Atomic orbital electron populations 1.21839 0.98336 0.98075 1.01243 1.21939 0.92638 0.99729 1.02337 1.18817 0.94219 0.89204 0.80768 0.93065 1.21190 0.90672 1.39217 1.06366 0.92103 1.24875 0.98580 0.94770 0.95366 1.69883 1.35227 1.37443 1.09341 0.86520 0.84873 0.78317 0.77457 1.20151 1.21154 1.20183 1.46425 1.14377 1.55552 1.18627 1.17588 0.83010 0.78962 0.86018 1.90750 1.51590 1.60593 1.39686 1.21724 0.99162 1.10720 0.98660 1.23215 0.98049 0.87513 0.85763 1.67869 1.16771 1.16715 1.28025 1.19381 0.85626 0.87283 0.86665 1.45807 1.17088 1.57707 1.10093 1.21652 0.82152 0.96903 1.03457 1.21652 0.92773 1.03144 0.86611 1.67974 1.35249 1.25007 1.01297 1.23170 0.92895 0.83751 0.92475 0.93067 0.95851 0.94321 0.88225 0.95003 0.92484 0.78153 0.81133 0.92924 0.91346 0.89913 0.92909 0.91350 0.89902 0.80345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.46 7.57 -51.93 -0.39 1.07 16 5 C -0.54 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.34 11.29 55.43 0.63 -23.72 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 13 N -0.70 -14.13 4.97 -55.97 -0.28 -14.41 16 14 C 0.56 10.95 6.34 -12.46 -0.08 10.87 16 15 O -0.55 -12.35 13.60 5.29 0.07 -12.28 16 16 C -0.29 -4.68 5.91 -104.69 -0.62 -5.30 16 17 C 0.22 3.18 10.80 -16.80 -0.18 3.00 16 18 N -0.57 -8.16 9.06 -13.66 -0.12 -8.28 16 19 C 0.57 7.97 8.16 -323.04 -2.64 5.33 16 20 N -0.59 -6.52 3.36 -191.95 -0.65 -7.16 16 21 C 0.10 0.84 10.43 59.85 0.62 1.46 16 22 C 0.10 0.84 10.43 59.85 0.62 1.46 16 23 N -0.57 -8.37 9.06 -13.66 -0.12 -8.50 16 24 C 0.25 3.73 10.87 -16.79 -0.18 3.54 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.83 5.67 -51.93 -0.29 0.53 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 6.65 6.66 -40.82 -0.27 6.38 16 32 H 0.17 2.02 6.52 -52.48 -0.34 1.68 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 35 H 0.08 0.78 7.32 -51.93 -0.38 0.40 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 38 H 0.08 0.77 7.32 -51.93 -0.38 0.39 16 39 H 0.18 2.52 7.74 -52.49 -0.41 2.12 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -30.87 322.74 -8.71 -39.58 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.25 Total: 6.09 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -2.83 Total: 8.51 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.55 Total: -62.07 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.87 -8.71 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189858122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.562 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds