Wall clock time and date at job start Tue Mar 31 2020 00:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47183 * 60.00003 * 9 7 5 11 11 H 1.48496 * 109.47283 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47136 * 299.99823 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21586 * 120.00012 * 0.02562 * 14 13 3 16 16 C 1.47556 * 119.99802 * 180.02562 * 14 13 3 17 17 C 1.40104 * 120.87068 * 359.72277 * 16 14 13 18 18 N 1.31959 * 119.01481 * 179.71545 * 17 16 14 19 19 C 1.32669 * 120.89486 * 0.57427 * 18 17 16 20 20 N 1.37935 * 119.04096 * 179.72180 * 19 18 17 21 21 C 1.46507 * 119.99885 * 179.97438 * 20 19 18 22 22 C 1.46497 * 120.00291 * 359.97438 * 20 19 18 23 23 N 1.32665 * 121.91743 * 359.69789 * 19 18 17 24 24 C 1.31965 * 120.89949 * 0.02562 * 23 19 18 25 25 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 26 26 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 28 28 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 29 29 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 30 30 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 32 32 H 1.08003 * 120.48721 * 359.97280 * 17 16 14 33 33 H 1.08999 * 109.46523 * 90.00722 * 21 20 19 34 34 H 1.09001 * 109.46991 * 209.99988 * 21 20 19 35 35 H 1.08995 * 109.47377 * 330.00322 * 21 20 19 36 36 H 1.08998 * 109.47426 * 89.99432 * 22 20 19 37 37 H 1.08997 * 109.47150 * 209.99999 * 22 20 19 38 38 H 1.09000 * 109.46768 * 329.99645 * 22 20 19 39 39 H 1.07993 * 120.49583 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1451 -0.2345 11 1 6.3978 0.2158 -2.6499 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3374 2.6411 0.4285 16 6 0.0472 3.3293 2.6258 17 6 0.9234 3.3673 3.7184 18 7 0.5390 3.9723 4.8264 19 6 -0.6619 4.5290 4.9171 20 7 -1.0264 5.1465 6.0954 21 6 -2.3471 5.7685 6.2184 22 6 -0.0929 5.1804 7.2239 23 7 -1.5221 4.5095 3.9073 24 6 -1.2116 3.9289 2.7636 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8293 -0.0617 -2.9496 31 1 2.2720 2.1230 1.9979 32 1 1.9005 2.9118 3.6534 33 1 -3.0603 5.0351 6.5947 34 1 -2.2901 6.6084 6.9108 35 1 -2.6735 6.1245 5.2413 36 1 0.5245 6.0763 7.1581 37 1 -0.6532 5.1932 8.1587 38 1 0.5447 4.2968 7.1946 39 1 -1.9170 3.9165 1.9460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189858122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:51 Heat of formation + Delta-G solvation = 6.501044 kcal Electronic energy + Delta-G solvation = -21434.162212 eV Core-core repulsion = 18183.692617 eV Total energy + Delta-G solvation = -3250.469595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 5.01 seconds Orbital eigenvalues (eV) -42.17335 -40.40340 -37.73388 -36.87435 -34.97984 -34.23729 -33.17930 -31.88594 -29.18748 -28.94505 -27.14582 -25.37339 -24.89741 -23.66412 -22.10501 -21.17771 -19.43844 -18.74200 -18.68844 -17.56341 -17.04330 -16.82482 -16.20598 -16.09955 -15.68494 -15.44593 -15.13994 -14.80208 -14.57363 -14.38774 -13.80767 -13.45226 -13.42671 -13.20294 -13.14497 -12.88629 -12.85746 -12.76778 -12.62131 -12.15051 -12.02613 -11.95255 -11.55792 -11.23391 -11.02765 -10.72849 -10.48073 -10.23326 -9.64970 -8.96200 -8.12425 -6.29466 -0.30468 0.07537 1.48200 1.49555 1.57093 1.61819 2.04492 2.37127 2.61585 2.90471 3.06621 3.17420 3.51258 3.57923 3.90880 4.14373 4.30864 4.42244 4.51458 4.54345 4.61684 4.75580 4.78618 4.80637 4.89715 4.95463 5.10473 5.15677 5.30992 5.47968 5.58841 5.64258 5.72219 5.77891 5.83884 5.95546 6.20631 6.22594 6.77888 6.97217 7.10597 7.36370 7.56464 8.92668 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.003898 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.217954 B = 7181.391001 C = 7875.544306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.699 5.699 14 C 0.563 3.437 15 O -0.583 6.583 16 C -0.310 4.310 17 C 0.236 3.764 18 N -0.576 5.576 19 C 0.554 3.446 20 N -0.586 5.586 21 C 0.096 3.904 22 C 0.096 3.904 23 N -0.579 5.579 24 C 0.249 3.751 25 H 0.028 0.972 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.401 0.599 32 H 0.193 0.807 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 8.315 18.973 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.348 5.348 14 C 0.350 3.650 15 O -0.465 6.465 16 C -0.322 4.322 17 C 0.067 3.933 18 N -0.298 5.298 19 C 0.199 3.801 20 N -0.300 5.300 21 C -0.046 4.046 22 C -0.046 4.046 23 N -0.302 5.302 24 C 0.080 3.920 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.210 0.790 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.382 8.781 19.261 22.419 hybrid contribution 1.324 -0.579 -1.205 1.882 sum -6.058 8.203 18.056 20.737 Atomic orbital electron populations 1.21679 0.97029 0.99119 1.00306 1.21793 0.93722 0.99128 1.01383 1.18395 0.93646 0.89175 0.81115 0.97981 1.21562 0.91416 1.38965 1.06757 0.90856 1.25735 1.03119 0.94421 0.95060 1.70040 1.37061 1.38298 1.09859 0.85458 0.79344 0.78387 0.77499 1.18888 1.21396 1.19744 1.46132 1.15195 1.55680 1.17766 1.17984 0.82119 0.78125 0.86746 1.90728 1.52534 1.61901 1.41385 1.21311 1.00365 1.12838 0.97662 1.23499 0.98339 0.86500 0.85004 1.67993 1.16935 1.17178 1.27698 1.19852 0.85588 0.87137 0.87524 1.46296 1.18250 1.55979 1.09482 1.21858 0.81029 0.98046 1.03661 1.21867 0.92886 1.03010 0.86820 1.68053 1.35429 1.25441 1.01283 1.23239 0.92651 0.83239 0.92874 0.95326 0.93687 0.93876 0.90918 0.93984 0.92638 0.76320 0.79012 0.92048 0.88168 0.91204 0.92077 0.88220 0.90944 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.52 71.98 0.61 -4.93 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.73 16 3 C 0.28 14.07 2.24 44.24 0.10 14.17 16 4 H 0.00 0.14 7.57 -2.39 -0.02 0.12 16 5 C -0.55 -28.41 8.73 25.60 0.22 -28.19 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -51.72 11.29 21.45 0.24 -51.47 16 9 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 N -0.70 -28.21 4.97 -449.25 -2.23 -30.45 16 14 C 0.56 22.29 6.34 86.70 0.55 22.84 16 15 O -0.58 -27.26 13.60 -3.99 -0.05 -27.32 16 16 C -0.31 -9.81 5.91 -19.91 -0.12 -9.92 16 17 C 0.24 6.36 10.80 85.13 0.92 7.28 16 18 N -0.58 -15.33 9.06 -197.12 -1.79 -17.12 16 19 C 0.55 14.63 8.16 261.57 2.14 16.76 16 20 N -0.59 -11.36 3.36 -761.22 -2.56 -13.92 16 21 C 0.10 1.32 10.43 127.77 1.33 2.65 16 22 C 0.10 1.28 10.43 127.77 1.33 2.62 16 23 N -0.58 -16.31 9.06 -197.12 -1.79 -18.10 16 24 C 0.25 7.48 10.87 85.13 0.93 8.41 16 25 H 0.03 1.37 7.85 -2.39 -0.02 1.35 16 26 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.04 1.86 5.67 -2.39 -0.01 1.85 16 28 H 0.07 3.96 5.95 -2.38 -0.01 3.94 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.40 13.45 6.66 -92.70 -0.62 12.83 16 32 H 0.19 4.14 6.52 -2.91 -0.02 4.12 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 0.76 8.07 -2.39 -0.02 0.74 16 35 H 0.07 1.18 7.32 -2.39 -0.02 1.16 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.73 8.07 -2.39 -0.02 0.71 16 38 H 0.07 1.16 7.32 -2.39 -0.02 1.14 16 39 H 0.18 5.19 7.74 -2.91 -0.02 5.17 16 Total: -1.00 -67.63 322.74 2.93 -64.70 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.45 Total: 22.85 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: 8.63 Total: 27.30 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -8.12 Total: -131.06 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -67.63 2.93 -64.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189858122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.203 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.01 seconds