Wall clock time and date at job start Tue Mar 31 2020 00:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21521 * 119.99649 * 0.02562 * 14 13 3 16 16 C 1.48125 * 120.00480 * 180.02562 * 14 13 3 17 17 C 1.39248 * 120.04485 * 179.72510 * 16 14 13 18 18 N 1.32198 * 120.05671 * 179.72894 * 17 16 14 19 19 C 1.31918 * 120.17109 * 0.56658 * 18 17 16 20 20 C 1.39664 * 120.09467 * 359.68720 * 19 18 17 21 21 N 1.38974 * 120.03356 * 180.02562 * 20 19 18 22 22 C 1.46501 * 120.00327 * 5.01497 * 21 20 19 23 23 C 1.46505 * 120.00108 * 185.02058 * 21 20 19 24 24 N 1.32344 * 119.93319 * 0.02562 * 20 19 18 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.07989 * 119.97020 * 0.02562 * 17 16 14 33 33 H 1.08008 * 119.95580 * 179.70688 * 19 18 17 34 34 H 1.08998 * 109.46540 * 90.00338 * 22 21 20 35 35 H 1.08995 * 109.47566 * 210.00052 * 22 21 20 36 36 H 1.09000 * 109.47026 * 330.00450 * 22 21 20 37 37 H 1.09003 * 109.46923 * 59.99735 * 23 21 20 38 38 H 1.08995 * 109.47206 * 179.97438 * 23 21 20 39 39 H 1.09002 * 109.47061 * 299.99889 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3411 2.6319 0.4325 16 6 0.0434 3.3272 2.6324 17 6 -1.2119 3.9182 2.7503 18 7 -1.5638 4.5051 3.8814 19 6 -0.7239 4.5429 4.8980 20 6 0.5389 3.9569 4.7852 21 7 1.4225 3.9971 5.8571 22 6 0.9918 4.5560 7.1411 23 6 2.7848 3.4806 5.7032 24 7 0.8931 3.3634 3.6567 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 -1.9004 3.8929 1.9187 33 1 -1.0132 5.0275 5.8189 34 1 0.5660 3.7642 7.7573 35 1 1.8490 4.9934 7.6528 36 1 0.2400 5.3260 6.9682 37 1 3.2976 4.0366 4.9182 38 1 3.3256 3.5964 6.6424 39 1 2.7450 2.4251 5.4342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190735829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:33 Heat of formation + Delta-G solvation = 23.568815 kcal Electronic energy + Delta-G solvation = -21747.348943 eV Core-core repulsion = 18497.619462 eV Total energy + Delta-G solvation = -3249.729481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09833 -38.83022 -37.01107 -35.08122 -34.12375 -32.28521 -31.09630 -30.49733 -28.66576 -27.06297 -25.80155 -24.87438 -23.09199 -22.20808 -20.53031 -19.37976 -18.11209 -17.64479 -16.85509 -16.30275 -15.77347 -15.51838 -15.28215 -14.72268 -14.57505 -14.32582 -13.82186 -13.40033 -12.94571 -12.79653 -12.67723 -12.61373 -12.11869 -12.03162 -11.55765 -11.43366 -11.25649 -11.24270 -10.99291 -10.82329 -10.33786 -10.19027 -9.98631 -9.73027 -9.57815 -9.04069 -8.84512 -8.49817 -7.89173 -7.77170 -6.11681 -4.20711 0.65979 1.31138 2.60531 3.24873 3.27182 3.32057 3.34352 3.78963 4.12798 4.29808 4.31345 4.38882 4.53954 4.79322 5.00800 5.06565 5.19813 5.24831 5.32800 5.38227 5.50620 5.60235 5.76788 6.24942 6.40433 6.46959 6.52881 6.66240 6.95650 7.05485 7.19124 7.34377 7.40489 7.45767 7.61992 7.71584 7.85950 7.92853 8.17420 8.64840 8.75783 9.06446 9.45998 10.93774 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.004943 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.312148 B = 5662.765779 C = 6752.573206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.267 3.733 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.555 3.445 15 O -0.535 6.535 16 C 0.100 3.900 17 C 0.032 3.968 18 N -0.407 5.407 19 C 0.001 3.999 20 C 0.350 3.650 21 N -0.612 5.612 22 C 0.094 3.906 23 C 0.100 3.900 24 N -0.475 5.475 25 H 0.024 0.976 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.101 0.899 30 H 0.264 0.736 31 H 0.398 0.602 32 H 0.179 0.821 33 H 0.166 0.834 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 6.636 17.407 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.327 5.327 14 C 0.337 3.663 15 O -0.413 6.413 16 C -0.043 4.043 17 C -0.128 4.128 18 N -0.119 5.119 19 C -0.169 4.169 20 C 0.111 3.889 21 N -0.327 5.327 22 C -0.049 4.049 23 C -0.042 4.042 24 N -0.201 5.201 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.232 0.768 32 H 0.196 0.804 33 H 0.183 0.817 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.912 6.478 16.609 18.252 hybrid contribution 1.407 -0.061 0.396 1.463 sum -2.505 6.417 17.005 18.348 Atomic orbital electron populations 1.21851 0.98312 0.98192 1.01219 1.21940 0.92651 0.99601 1.02419 1.18910 0.94471 0.89317 0.80721 0.92986 1.21213 0.90554 1.39036 1.06334 0.92024 1.24872 0.98602 0.94792 0.95333 1.69893 1.35110 1.37609 1.09329 0.86448 0.84877 0.78429 0.77356 1.20553 1.21073 1.19882 1.46430 1.13981 1.53485 1.18757 1.17644 0.83672 0.79873 0.85145 1.90775 1.51742 1.60307 1.38479 1.22421 0.91858 0.96318 0.93655 1.23414 0.95926 0.97082 0.96423 1.68343 1.32295 1.12041 0.99266 1.23324 0.90781 1.02896 0.99873 1.19317 0.89468 0.92103 0.88007 1.46180 1.11904 1.65701 1.08909 1.21780 1.01174 0.98409 0.83521 1.21614 0.80950 0.99954 1.01717 1.67925 1.34610 1.18181 0.99415 0.95721 0.92960 0.94430 0.94961 0.88098 0.92550 0.76787 0.80422 0.81734 0.92680 0.90653 0.91029 0.92106 0.91047 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.61 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.68 -14.82 5.01 -55.79 -0.28 -15.10 16 14 C 0.56 11.61 6.38 -12.20 -0.08 11.54 16 15 O -0.54 -12.40 13.47 5.35 0.07 -12.33 16 16 C 0.10 1.77 6.75 -82.87 -0.56 1.21 16 17 C 0.03 0.52 10.76 -17.02 -0.18 0.33 16 18 N -0.41 -5.97 10.48 -12.54 -0.13 -6.10 16 19 C 0.00 0.01 10.43 -16.98 -0.18 -0.17 16 20 C 0.35 4.70 7.37 -154.90 -1.14 3.55 16 21 N -0.61 -6.26 3.39 -189.51 -0.64 -6.90 16 22 C 0.09 0.56 10.26 59.85 0.61 1.18 16 23 C 0.10 0.96 10.20 59.85 0.61 1.57 16 24 N -0.48 -7.70 8.95 -8.81 -0.08 -7.78 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 27 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.40 8.08 7.89 -40.82 -0.32 7.76 16 32 H 0.18 2.75 7.63 -52.49 -0.40 2.35 16 33 H 0.17 1.42 6.03 -52.48 -0.32 1.10 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.32 7.92 -51.93 -0.41 -0.10 16 36 H 0.07 0.35 5.99 -51.93 -0.31 0.04 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -30.66 322.86 -7.11 -37.77 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.22 Total: 6.89 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -1.29 Total: 7.06 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.51 Total: -59.81 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.33 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.66 -7.11 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190735829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.336 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds