Wall clock time and date at job start Tue Mar 31 2020 00:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21521 * 119.99649 * 0.02562 * 14 13 3 16 16 C 1.48125 * 120.00480 * 180.02562 * 14 13 3 17 17 C 1.39248 * 120.04485 * 179.72510 * 16 14 13 18 18 N 1.32198 * 120.05671 * 179.72894 * 17 16 14 19 19 C 1.31918 * 120.17109 * 0.56658 * 18 17 16 20 20 C 1.39664 * 120.09467 * 359.68720 * 19 18 17 21 21 N 1.38974 * 120.03356 * 180.02562 * 20 19 18 22 22 C 1.46501 * 120.00327 * 5.01497 * 21 20 19 23 23 C 1.46505 * 120.00108 * 185.02058 * 21 20 19 24 24 N 1.32344 * 119.93319 * 0.02562 * 20 19 18 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.07989 * 119.97020 * 0.02562 * 17 16 14 33 33 H 1.08008 * 119.95580 * 179.70688 * 19 18 17 34 34 H 1.08998 * 109.46540 * 90.00338 * 22 21 20 35 35 H 1.08995 * 109.47566 * 210.00052 * 22 21 20 36 36 H 1.09000 * 109.47026 * 330.00450 * 22 21 20 37 37 H 1.09003 * 109.46923 * 59.99735 * 23 21 20 38 38 H 1.08995 * 109.47206 * 179.97438 * 23 21 20 39 39 H 1.09002 * 109.47061 * 299.99889 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3411 2.6319 0.4325 16 6 0.0434 3.3272 2.6324 17 6 -1.2119 3.9182 2.7503 18 7 -1.5638 4.5051 3.8814 19 6 -0.7239 4.5429 4.8980 20 6 0.5389 3.9569 4.7852 21 7 1.4225 3.9971 5.8571 22 6 0.9918 4.5560 7.1411 23 6 2.7848 3.4806 5.7032 24 7 0.8931 3.3634 3.6567 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 -1.9004 3.8929 1.9187 33 1 -1.0132 5.0275 5.8189 34 1 0.5660 3.7642 7.7573 35 1 1.8490 4.9934 7.6528 36 1 0.2400 5.3260 6.9682 37 1 3.2976 4.0366 4.9182 38 1 3.3256 3.5964 6.6424 39 1 2.7450 2.4251 5.4342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190735829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:31 Heat of formation + Delta-G solvation = 2.244403 kcal Electronic energy + Delta-G solvation = -21748.273638 eV Core-core repulsion = 18497.619462 eV Total energy + Delta-G solvation = -3250.654177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.26732 -40.47012 -37.92397 -36.96446 -35.33095 -34.20784 -32.79684 -31.77137 -29.44684 -28.92416 -26.70926 -26.21032 -24.91150 -23.39036 -22.08710 -21.22702 -19.60664 -18.77575 -18.23798 -17.54246 -17.15517 -16.99447 -16.79394 -16.20260 -16.09194 -15.35629 -15.14265 -14.85677 -14.59894 -14.06043 -13.85264 -13.50309 -13.42427 -13.29026 -13.18019 -12.92655 -12.76504 -12.67220 -12.51333 -12.38607 -12.19539 -12.08474 -11.62680 -11.27475 -11.06712 -11.05289 -10.54706 -10.13655 -9.70069 -8.73127 -8.16360 -6.33608 -0.55308 0.18736 1.44764 1.45528 1.56034 1.76958 1.82313 2.25156 2.47365 2.82206 3.12692 3.16901 3.31541 3.37950 4.05181 4.08195 4.24825 4.34598 4.48427 4.55398 4.55645 4.57438 4.73962 4.80565 4.95497 4.99002 5.04469 5.15029 5.24058 5.41455 5.50586 5.58227 5.67761 5.77363 5.88904 6.02929 6.14104 6.40811 6.69823 6.71897 6.93510 7.27842 7.43878 8.89169 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.004943 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.312148 B = 5662.765779 C = 6752.573206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.275 3.725 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.681 5.681 14 C 0.556 3.444 15 O -0.566 6.566 16 C 0.078 3.922 17 C 0.024 3.976 18 N -0.415 5.415 19 C 0.027 3.973 20 C 0.345 3.655 21 N -0.604 5.604 22 C 0.083 3.917 23 C 0.097 3.903 24 N -0.497 5.497 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.405 0.595 32 H 0.174 0.826 33 H 0.211 0.789 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.108 0.892 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 7.550 20.770 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.328 5.328 14 C 0.340 3.660 15 O -0.446 6.446 16 C -0.062 4.062 17 C -0.134 4.134 18 N -0.127 5.127 19 C -0.145 4.145 20 C 0.102 3.898 21 N -0.318 5.318 22 C -0.058 4.058 23 C -0.046 4.046 24 N -0.224 5.224 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.191 0.809 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.187 7.395 19.995 21.556 hybrid contribution 1.174 -0.250 -0.428 1.274 sum -2.013 7.146 19.567 20.928 Atomic orbital electron populations 1.21692 0.96862 0.99383 1.00285 1.21787 0.93869 0.98847 1.01388 1.18532 0.94002 0.89380 0.80829 0.97600 1.21506 0.91191 1.39268 1.06799 0.91496 1.25733 1.03330 0.94228 0.94850 1.70035 1.37051 1.38150 1.09797 0.85366 0.79051 0.78810 0.77230 1.19579 1.21014 1.19160 1.46193 1.14794 1.53996 1.17811 1.18089 0.82725 0.79040 0.86176 1.90741 1.52409 1.61305 1.40111 1.21744 0.93001 0.98474 0.92980 1.23295 0.95310 0.97598 0.97212 1.68429 1.32788 1.12239 0.99257 1.24089 0.89624 1.00445 1.00353 1.19706 0.90575 0.91529 0.87945 1.46572 1.11514 1.64503 1.09244 1.22156 1.02843 0.99224 0.81546 1.21689 0.80970 0.98660 1.03232 1.67804 1.34782 1.19605 1.00194 0.93320 0.94885 0.94319 0.94366 0.90459 0.92465 0.75936 0.80867 0.77219 0.91341 0.88261 0.89489 0.93594 0.87360 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.51 71.98 0.61 -5.16 16 2 C -0.12 -6.07 5.45 30.60 0.17 -5.90 16 3 C 0.28 14.59 2.24 44.25 0.10 14.69 16 4 H 0.01 0.38 7.58 -2.39 -0.02 0.36 16 5 C -0.55 -29.80 8.73 25.60 0.22 -29.58 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -52.23 11.29 21.45 0.24 -51.99 16 9 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 N -0.68 -30.89 5.01 -448.72 -2.25 -33.14 16 14 C 0.56 24.31 6.38 86.87 0.55 24.86 16 15 O -0.57 -27.71 13.47 -3.78 -0.05 -27.76 16 16 C 0.08 2.82 6.75 41.82 0.28 3.10 16 17 C 0.02 0.79 10.76 84.88 0.91 1.70 16 18 N -0.41 -11.45 10.48 -193.60 -2.03 -13.48 16 19 C 0.03 0.58 10.43 85.02 0.89 1.46 16 20 C 0.34 8.45 7.37 133.22 0.98 9.43 16 21 N -0.60 -10.34 3.39 -753.50 -2.55 -12.89 16 22 C 0.08 0.58 10.26 127.77 1.31 1.89 16 23 C 0.10 1.63 10.20 127.77 1.30 2.93 16 24 N -0.50 -15.89 8.95 -181.80 -1.63 -17.52 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.03 1.61 7.84 -2.39 -0.02 1.60 16 27 H 0.04 1.75 5.64 -2.38 -0.01 1.74 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 4.30 5.95 -2.39 -0.01 4.29 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.41 16.98 7.89 -92.71 -0.73 16.25 16 32 H 0.17 5.60 7.63 -2.92 -0.02 5.58 16 33 H 0.21 2.47 6.03 -2.91 -0.02 2.45 16 34 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.10 0.30 7.92 -2.39 -0.02 0.28 16 36 H 0.09 0.37 5.99 -2.39 -0.01 0.35 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 1.00 7.79 -2.39 -0.02 0.98 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -69.28 322.86 1.89 -67.40 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.34 Total: 24.04 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 7.78 Total: 20.90 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -8.22 Total: -129.01 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.28 1.89 -67.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190735829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.640 kcal (2) G-P(sol) polarization free energy of solvation -69.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds