Wall clock time and date at job start Tue Mar 31 2020 00:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47153 * 2 1 4 4 C 1.52998 * 109.46824 * 119.99471 * 2 1 3 5 5 H 1.09000 * 109.47317 * 60.00357 * 4 2 1 6 6 N 1.46903 * 109.47059 * 179.97438 * 4 2 1 7 7 C 1.46900 * 111.00425 * 275.00591 * 6 4 2 8 8 C 1.52994 * 109.47557 * 180.02562 * 7 6 4 9 9 H 1.09008 * 109.46970 * 304.99717 * 8 7 6 10 10 C 1.47205 * 109.47251 * 64.99350 * 8 7 6 11 11 N 6.10189 * 143.04508 * 127.22871 * 2 1 3 12 12 C 1.52997 * 109.47404 * 184.99766 * 8 7 6 13 13 C 1.50701 * 109.47212 * 174.99684 * 12 8 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 8 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 8 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50698 * 109.47306 * 300.00318 * 4 2 1 22 22 N 1.34492 * 126.28913 * 105.00288 * 21 4 2 23 23 C 1.31130 * 105.61449 * 179.97438 * 22 21 4 24 24 O 1.33641 * 106.90044 * 359.97438 * 23 22 21 25 25 N 1.21304 * 109.81146 * 359.73795 * 24 23 22 26 26 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47332 * 300.00509 * 1 2 3 28 28 H 1.09007 * 109.46767 * 60.00402 * 1 2 3 29 29 H 1.08992 * 109.47610 * 239.99944 * 2 1 3 30 30 H 1.08998 * 109.46967 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46464 * 299.99540 * 3 2 1 32 32 H 1.08994 * 109.47417 * 59.99543 * 3 2 1 33 33 H 1.00900 * 110.99940 * 151.04516 * 6 4 2 34 34 H 1.09001 * 109.46898 * 59.99249 * 7 6 4 35 35 H 1.09009 * 109.46674 * 299.99940 * 7 6 4 36 36 H 1.09002 * 109.47153 * 54.99686 * 12 8 7 37 37 H 1.09001 * 109.46832 * 294.99876 * 12 8 7 38 38 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 39 39 H 1.08000 * 126.55157 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6766 -1.7488 1.2494 6 7 3.5089 -0.7217 1.2491 7 6 4.0349 -1.8454 0.4625 8 6 5.5643 -1.8129 0.4862 9 1 5.9125 -0.8396 0.1402 10 6 6.0388 -2.0435 1.8605 11 7 6.4061 -2.2194 2.9209 12 6 6.1120 -2.9067 -0.4328 13 6 7.6132 -2.7965 -0.5056 14 1 8.1255 -2.0239 0.0485 15 6 8.3328 -3.6827 -1.2788 16 7 7.7090 -4.6238 -1.9532 17 14 10.1936 -3.5466 -1.3685 18 1 10.7680 -3.7087 -0.0086 19 1 10.7252 -4.6082 -2.2606 20 1 10.5671 -2.2144 -1.9080 21 6 1.5375 -0.0107 2.4797 22 7 0.5495 -0.4271 3.2916 23 6 0.4495 0.4891 4.2244 24 8 1.3683 1.4210 3.9538 25 7 1.9839 1.1135 2.9548 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9565 0.8899 33 1 3.8707 -0.7388 2.1908 34 1 3.6852 -1.7637 -0.5666 35 1 3.6851 -2.7844 0.8917 36 1 5.6901 -2.7877 -1.4308 37 1 5.8382 -3.8846 -0.0368 38 1 8.2152 -5.2471 -2.4975 39 1 -0.2426 0.4900 5.0535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262572656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:09 Heat of formation + Delta-G solvation = 83.202060 kcal Electronic energy + Delta-G solvation = -21425.477462 eV Core-core repulsion = 18178.333873 eV Total energy + Delta-G solvation = -3247.143589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.81048 -38.64643 -36.73931 -35.42087 -34.24635 -33.19978 -32.34997 -31.20954 -27.55578 -27.16999 -25.47248 -24.36136 -22.96860 -22.81099 -21.77844 -19.92993 -18.29098 -17.90247 -16.78587 -16.56693 -16.17328 -15.66897 -15.16818 -14.77770 -14.48907 -13.95587 -13.55537 -13.07385 -12.90514 -12.76603 -12.57999 -12.38904 -12.11669 -12.05076 -11.96438 -11.75122 -11.33867 -11.26768 -11.10570 -11.07585 -10.94400 -10.80356 -10.69212 -10.58545 -10.29246 -10.17330 -9.57405 -9.26286 -8.49997 -8.45255 -6.10391 -4.13617 1.02398 2.04477 2.83034 3.31136 3.35239 3.36663 3.39763 3.54398 3.58882 3.82287 4.26464 4.41420 4.65164 4.75465 4.83645 5.03913 5.16178 5.27693 5.33251 5.41680 5.46967 5.56430 5.64485 5.68228 5.75883 5.85458 5.93803 6.03508 6.09197 6.27351 6.29967 6.49771 6.52249 6.89843 7.23220 7.41322 7.50704 7.84371 8.01879 8.21704 8.36897 8.90533 9.51913 11.00444 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.003769 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.731777 B = 7426.356142 C = 7951.261558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.140 4.140 4 C 0.181 3.819 5 H 0.076 0.924 6 N -0.677 5.677 7 C 0.066 3.934 8 C 0.008 3.992 9 H 0.113 0.887 10 C 0.240 3.760 11 N -0.475 5.475 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.170 3.830 22 N -0.482 5.482 23 C 0.150 3.850 24 O 0.076 5.924 25 N -0.353 5.353 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.342 0.658 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.348 10.697 6.237 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.198 4.198 4 C 0.070 3.930 5 H 0.094 0.906 6 N -0.309 5.309 7 C -0.063 4.063 8 C -0.014 4.014 9 H 0.131 0.869 10 C -0.077 4.077 11 N -0.152 5.152 12 C -0.005 4.005 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.103 4.103 22 N -0.215 5.215 23 C -0.091 4.091 24 O 0.016 5.984 25 N -0.059 5.059 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -17.147 10.788 6.610 21.309 hybrid contribution 0.543 -0.751 0.483 1.045 sum -16.604 10.037 7.093 20.658 Atomic orbital electron populations 1.21835 0.95147 1.01905 1.01429 1.21129 0.94916 0.97763 0.96400 1.21776 1.03131 0.94265 1.00594 1.19947 0.88696 0.97021 0.87330 0.90629 1.60639 1.04354 1.46647 1.19284 1.22212 0.93990 0.90704 0.99431 1.19324 0.92501 1.04809 0.84732 0.86947 1.29326 0.92306 0.91669 0.94414 1.81032 1.09674 1.10592 1.13936 1.19160 0.96199 0.91550 0.93617 1.21099 0.91498 1.15269 1.28703 0.92553 1.24941 0.98604 0.95070 0.95268 1.69925 1.35837 1.17411 1.29833 0.86653 0.85511 0.77863 0.78053 1.20279 1.21175 1.19988 1.25850 0.93192 0.91671 0.99608 1.71887 1.17898 1.27197 1.04503 1.30457 0.94423 0.84186 1.00084 1.85364 1.36748 1.43250 1.33069 1.74771 1.16411 1.16268 0.98426 0.92398 0.93563 0.92207 0.89242 0.90538 0.93404 0.93238 0.83914 0.88509 0.94281 0.94095 0.95721 0.92724 0.72410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.95 37.16 0.33 -1.07 16 2 C -0.08 -0.89 2.83 -90.62 -0.26 -1.15 16 3 C -0.14 -1.61 8.66 37.16 0.32 -1.29 16 4 C 0.18 2.21 2.39 -68.86 -0.16 2.05 16 5 H 0.08 0.92 7.80 -51.93 -0.40 0.52 16 6 N -0.68 -9.26 5.53 -107.95 -0.60 -9.86 16 7 C 0.07 0.96 4.92 -3.83 -0.02 0.94 16 8 C 0.01 0.15 2.42 -93.41 -0.23 -0.07 16 9 H 0.11 1.98 8.14 -51.92 -0.42 1.55 16 10 C 0.24 4.90 12.98 -20.76 -0.27 4.64 16 11 N -0.48 -10.56 18.54 42.15 0.78 -9.78 16 12 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 13 C -0.53 -14.01 8.60 -34.44 -0.30 -14.31 16 14 H 0.06 1.49 7.59 -52.49 -0.40 1.10 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.17 2.09 4.90 -156.37 -0.77 1.33 16 22 N -0.48 -5.29 11.55 -13.72 -0.16 -5.45 16 23 C 0.15 1.10 13.40 51.98 0.70 1.79 16 24 O 0.08 0.75 11.31 18.11 0.20 0.96 16 25 N -0.35 -4.45 10.41 30.88 0.32 -4.13 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.48 7.22 -51.93 -0.37 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.94 7.45 -51.93 -0.39 0.56 16 30 H 0.08 0.99 7.60 -51.93 -0.39 0.59 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.61 6.09 -51.93 -0.32 0.29 16 33 H 0.34 5.19 7.43 -39.29 -0.29 4.89 16 34 H 0.10 1.27 7.43 -51.93 -0.39 0.88 16 35 H 0.04 0.57 8.05 -51.92 -0.42 0.15 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.26 0.33 8.06 -52.49 -0.42 -0.09 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -31.77 333.30 -5.04 -36.82 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.47 Total: -0.34 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.87 Total: -4.87 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 1.08 Total: -53.91 kcal Atomic # 8 Polarization: 0.75 SS G_CDS: 0.20 Total: 0.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.77 -5.04 -36.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262572656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.018 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds