Wall clock time and date at job start Tue Mar 31 2020 00:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47153 * 2 1 4 4 C 1.52998 * 109.46824 * 119.99471 * 2 1 3 5 5 H 1.09000 * 109.47317 * 60.00357 * 4 2 1 6 6 N 1.46903 * 109.47059 * 179.97438 * 4 2 1 7 7 C 1.46900 * 111.00425 * 275.00591 * 6 4 2 8 8 C 1.52994 * 109.47557 * 180.02562 * 7 6 4 9 9 H 1.09008 * 109.46970 * 304.99717 * 8 7 6 10 10 C 1.47205 * 109.47251 * 64.99350 * 8 7 6 11 11 N 6.10189 * 143.04508 * 127.22871 * 2 1 3 12 12 C 1.52997 * 109.47404 * 184.99766 * 8 7 6 13 13 C 1.50701 * 109.47212 * 174.99684 * 12 8 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 8 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 8 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50698 * 109.47306 * 300.00318 * 4 2 1 22 22 N 1.34492 * 126.28913 * 105.00288 * 21 4 2 23 23 C 1.31130 * 105.61449 * 179.97438 * 22 21 4 24 24 O 1.33641 * 106.90044 * 359.97438 * 23 22 21 25 25 N 1.21304 * 109.81146 * 359.73795 * 24 23 22 26 26 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47332 * 300.00509 * 1 2 3 28 28 H 1.09007 * 109.46767 * 60.00402 * 1 2 3 29 29 H 1.08992 * 109.47610 * 239.99944 * 2 1 3 30 30 H 1.08998 * 109.46967 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46464 * 299.99540 * 3 2 1 32 32 H 1.08994 * 109.47417 * 59.99543 * 3 2 1 33 33 H 1.00900 * 110.99940 * 151.04516 * 6 4 2 34 34 H 1.09001 * 109.46898 * 59.99249 * 7 6 4 35 35 H 1.09009 * 109.46674 * 299.99940 * 7 6 4 36 36 H 1.09002 * 109.47153 * 54.99686 * 12 8 7 37 37 H 1.09001 * 109.46832 * 294.99876 * 12 8 7 38 38 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 39 39 H 1.08000 * 126.55157 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6766 -1.7488 1.2494 6 7 3.5089 -0.7217 1.2491 7 6 4.0349 -1.8454 0.4625 8 6 5.5643 -1.8129 0.4862 9 1 5.9125 -0.8396 0.1402 10 6 6.0388 -2.0435 1.8605 11 7 6.4061 -2.2194 2.9209 12 6 6.1120 -2.9067 -0.4328 13 6 7.6132 -2.7965 -0.5056 14 1 8.1255 -2.0239 0.0485 15 6 8.3328 -3.6827 -1.2788 16 7 7.7090 -4.6238 -1.9532 17 14 10.1936 -3.5466 -1.3685 18 1 10.7680 -3.7087 -0.0086 19 1 10.7252 -4.6082 -2.2606 20 1 10.5671 -2.2144 -1.9080 21 6 1.5375 -0.0107 2.4797 22 7 0.5495 -0.4271 3.2916 23 6 0.4495 0.4891 4.2244 24 8 1.3683 1.4210 3.9538 25 7 1.9839 1.1135 2.9548 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9565 0.8899 33 1 3.8707 -0.7388 2.1908 34 1 3.6852 -1.7637 -0.5666 35 1 3.6851 -2.7844 0.8917 36 1 5.6901 -2.7877 -1.4308 37 1 5.8382 -3.8846 -0.0368 38 1 8.2152 -5.2471 -2.4975 39 1 -0.2426 0.4900 5.0535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262572656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:08 Heat of formation + Delta-G solvation = 60.440241 kcal Electronic energy + Delta-G solvation = -21426.464489 eV Core-core repulsion = 18178.333873 eV Total energy + Delta-G solvation = -3248.130616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.59901 -39.71078 -38.16500 -36.33494 -35.75456 -34.82245 -33.26214 -32.69718 -28.99120 -28.03511 -26.87667 -25.11769 -24.22414 -23.85845 -23.43343 -20.76478 -19.10155 -18.80324 -18.46273 -18.25966 -17.16786 -16.69216 -16.51503 -16.04516 -15.65679 -15.07467 -14.95603 -14.44330 -14.33064 -14.17508 -13.90075 -13.51613 -13.38436 -13.22608 -13.09919 -12.94444 -12.75284 -12.69553 -12.52041 -12.39886 -12.13753 -12.04981 -11.83884 -11.81873 -11.64474 -11.44216 -11.22390 -10.94273 -10.54848 -9.57564 -8.19646 -6.27646 0.34340 1.25922 1.41055 1.42134 1.49389 1.88321 1.91324 2.24276 2.41028 2.62445 2.88426 3.14860 3.21065 3.43669 3.79428 3.96326 4.13394 4.25178 4.30442 4.37966 4.49859 4.66590 4.74348 4.79356 4.81228 4.91305 4.96008 5.03207 5.06678 5.10867 5.22756 5.42880 5.46750 5.57907 5.61740 5.77793 5.82489 6.06355 6.20053 6.70274 6.86146 7.29004 7.40760 8.91001 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.003769 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.731777 B = 7426.356142 C = 7951.261558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.134 4.134 4 C 0.181 3.819 5 H 0.075 0.925 6 N -0.675 5.675 7 C 0.078 3.922 8 C 0.021 3.979 9 H 0.124 0.876 10 C 0.250 3.750 11 N -0.507 5.507 12 C 0.040 3.960 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.946 3.054 18 H -0.282 1.282 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.158 3.842 22 N -0.513 5.513 23 C 0.175 3.825 24 O 0.073 5.927 25 N -0.380 5.380 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.333 0.667 34 H 0.116 0.884 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.427 11.572 6.453 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 C -0.191 4.191 4 C 0.070 3.930 5 H 0.093 0.907 6 N -0.306 5.306 7 C -0.052 4.052 8 C -0.001 4.001 9 H 0.142 0.858 10 C -0.066 4.066 11 N -0.184 5.184 12 C 0.001 3.999 13 C -0.579 4.579 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.772 3.228 18 H -0.208 1.208 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.115 4.115 22 N -0.246 5.246 23 C -0.064 4.064 24 O 0.013 5.987 25 N -0.087 5.087 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.330 0.670 Dipole moment (debyes) X Y Z Total from point charges -18.239 11.674 6.824 22.705 hybrid contribution 0.807 -0.999 0.500 1.378 sum -17.433 10.675 7.325 21.714 Atomic orbital electron populations 1.21764 0.94046 1.02202 1.01553 1.21142 0.95776 0.97162 0.95901 1.21696 1.01970 0.94788 1.00670 1.19980 0.87400 0.97301 0.88355 0.90688 1.60621 1.05646 1.45846 1.18497 1.22071 0.91168 0.91152 1.00791 1.19238 0.94932 1.03487 0.82463 0.85817 1.29746 0.91416 0.90779 0.94683 1.81026 1.10824 1.11534 1.15042 1.18979 0.94554 0.91896 0.94448 1.21516 0.93544 1.14822 1.28052 0.92952 1.25674 1.02571 0.95017 0.95277 1.70015 1.37252 1.18181 1.30692 0.85781 0.80901 0.78393 0.77692 1.20807 1.20628 1.18811 1.25842 0.93851 0.91874 0.99933 1.71874 1.18386 1.28704 1.05619 1.31620 0.93083 0.82005 0.99729 1.85319 1.37204 1.43736 1.32399 1.74763 1.17625 1.16774 0.99548 0.92014 0.94432 0.91008 0.88681 0.92159 0.92238 0.94189 0.84992 0.86575 0.94388 0.94092 0.98020 0.92673 0.67020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.95 71.98 0.64 -1.79 16 2 C -0.08 -1.63 2.83 -10.79 -0.03 -1.66 16 3 C -0.13 -2.95 8.66 71.98 0.62 -2.32 16 4 C 0.18 4.24 2.39 44.17 0.11 4.35 16 5 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 6 N -0.67 -18.00 5.53 -495.45 -2.74 -20.74 16 7 C 0.08 2.19 4.92 86.30 0.42 2.61 16 8 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 9 H 0.12 4.22 8.14 -2.38 -0.02 4.20 16 10 C 0.25 10.20 12.98 89.44 1.16 11.36 16 11 N -0.51 -22.54 18.54 20.01 0.37 -22.17 16 12 C 0.04 1.83 4.42 29.85 0.13 1.96 16 13 C -0.54 -28.69 8.60 25.60 0.22 -28.47 16 14 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 15 C 0.01 0.76 5.46 84.66 0.46 1.22 16 16 N -0.92 -52.70 13.29 21.45 0.28 -52.41 16 17 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 21 C 0.16 3.75 4.90 138.46 0.68 4.43 16 22 N -0.51 -10.47 11.55 -315.36 -3.64 -14.11 16 23 C 0.18 2.12 13.40 130.51 1.75 3.87 16 24 O 0.07 1.35 11.31 74.85 0.85 2.19 16 25 N -0.38 -9.32 10.41 -60.37 -0.63 -9.95 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 0.73 7.22 -2.39 -0.02 0.71 16 28 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.10 1.83 7.45 -2.39 -0.02 1.81 16 30 H 0.06 1.51 7.60 -2.39 -0.02 1.49 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.04 0.95 6.09 -2.39 -0.01 0.94 16 33 H 0.33 10.00 7.43 -89.69 -0.67 9.34 16 34 H 0.12 2.84 7.43 -2.39 -0.02 2.82 16 35 H 0.04 1.08 8.05 -2.38 -0.02 1.06 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.32 -0.55 8.06 -2.91 -0.02 -0.57 16 Total: -1.00 -68.57 333.30 3.06 -65.51 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.40 Total: 9.85 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.14 Total: -3.74 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.35 Total: -119.38 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.85 Total: 2.19 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.57 3.06 -65.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262572656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.953 kcal (2) G-P(sol) polarization free energy of solvation -68.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds