Wall clock time and date at job start Tue Mar 31 2020 00:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 C 1.52999 * 109.47226 * 119.99487 * 2 1 3 5 5 H 1.08993 * 109.47686 * 180.02562 * 4 2 1 6 6 N 1.46900 * 109.46849 * 60.07459 * 4 2 1 7 7 C 1.46902 * 111.00283 * 84.64370 * 6 4 2 8 8 C 1.52998 * 109.47304 * 185.21253 * 7 6 4 9 9 H 1.08997 * 109.47043 * 305.00299 * 8 7 6 10 10 C 1.47200 * 109.47141 * 65.00199 * 8 7 6 11 11 N 4.79161 * 66.00386 * 192.62140 * 2 1 3 12 12 C 1.53002 * 109.47007 * 185.00174 * 8 7 6 13 13 C 1.50697 * 109.46874 * 175.00225 * 12 8 7 14 14 H 1.07997 * 120.00434 * 359.97438 * 13 12 8 15 15 C 1.37875 * 119.99778 * 179.97438 * 13 12 8 16 16 N 1.31517 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00100 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47239 * 60.00037 * 17 15 13 19 19 H 1.48498 * 109.47380 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47093 * 300.00101 * 17 15 13 21 21 C 1.50703 * 109.47322 * 300.07620 * 4 2 1 22 22 N 1.34495 * 126.28968 * 254.99892 * 21 4 2 23 23 C 1.31123 * 105.61681 * 179.97438 * 22 21 4 24 24 O 1.33646 * 106.89921 * 359.97438 * 23 22 21 25 25 N 1.21301 * 109.80799 * 359.74725 * 24 23 22 26 26 H 1.09000 * 109.46787 * 65.92535 * 1 2 3 27 27 H 1.08990 * 109.47099 * 185.92546 * 1 2 3 28 28 H 1.09000 * 109.46909 * 305.92701 * 1 2 3 29 29 H 1.08994 * 109.47339 * 239.99819 * 2 1 3 30 30 H 1.09000 * 109.47421 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47355 * 299.99536 * 3 2 1 32 32 H 1.09000 * 109.47598 * 59.99649 * 3 2 1 33 33 H 1.00899 * 111.00196 * 208.59873 * 6 4 2 34 34 H 1.09004 * 109.46843 * 65.21442 * 7 6 4 35 35 H 1.08998 * 109.46781 * 305.21646 * 7 6 4 36 36 H 1.09000 * 109.46814 * 294.99995 * 12 8 7 37 37 H 1.08996 * 109.46898 * 55.00260 * 12 8 7 38 38 H 0.96998 * 119.99979 * 179.97438 * 16 15 13 39 39 H 1.07998 * 126.55396 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1300 -0.7208 1.2496 6 7 1.5518 -2.1066 1.2485 7 6 2.4322 -2.9746 0.4551 8 6 1.8245 -4.3762 0.3697 9 1 1.6350 -4.7518 1.3752 10 6 0.5584 -4.3172 -0.3789 11 7 -0.4186 -4.2717 -0.9565 12 6 2.7989 -5.3116 -0.3491 13 6 2.2558 -6.7171 -0.3253 14 1 1.3105 -6.9227 0.1548 15 6 2.9658 -7.7405 -0.9165 16 7 4.1167 -7.4900 -1.5016 17 14 2.2930 -9.4829 -0.8864 18 1 0.9762 -9.5170 -1.5721 19 1 3.2386 -10.3908 -1.5841 20 1 2.1296 -9.9262 0.5215 21 6 1.5362 -0.0117 2.4797 22 7 2.2567 0.7815 3.2924 23 6 1.4251 1.1807 4.2243 24 8 0.2405 0.6252 3.9518 25 7 0.3241 -0.0489 2.9468 26 1 -0.3633 0.4192 -0.9383 27 1 -0.3633 -1.0221 0.1061 28 1 -0.3633 0.6030 0.8322 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.4528 -2.4557 2.1899 34 1 3.4112 -3.0315 0.9310 35 1 2.5395 -2.5633 -0.5486 36 1 2.9196 -4.9861 -1.3823 37 1 3.7650 -5.2867 0.1550 38 1 4.6163 -8.2101 -1.9172 39 1 1.6537 1.8337 5.0536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262572657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:11 Heat of formation + Delta-G solvation = 60.524035 kcal Electronic energy + Delta-G solvation = -21465.231734 eV Core-core repulsion = 18217.104752 eV Total energy + Delta-G solvation = -3248.126982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.56077 -39.66618 -38.05265 -36.27904 -35.71484 -34.83579 -33.24134 -32.66283 -28.98648 -28.12745 -26.87939 -25.07120 -24.21677 -23.79793 -23.41255 -20.78232 -19.05821 -18.92533 -18.44938 -18.26750 -16.93598 -16.55682 -16.45745 -16.01653 -15.73851 -15.26960 -14.79982 -14.65262 -14.32218 -13.88661 -13.69957 -13.53924 -13.36353 -13.22599 -13.09581 -12.95273 -12.81620 -12.71737 -12.49955 -12.41817 -12.03672 -11.98197 -11.93290 -11.91532 -11.69140 -11.42004 -11.20085 -10.92284 -10.54779 -9.49047 -8.19469 -6.27482 0.39330 1.30161 1.40733 1.42517 1.49460 2.07709 2.15375 2.29097 2.41334 2.65184 2.93649 3.16071 3.33377 3.49187 3.77552 3.93508 4.17531 4.21050 4.28475 4.36154 4.49951 4.67729 4.71510 4.73914 4.80792 4.83484 4.93666 4.97726 5.01403 5.10179 5.15417 5.34796 5.45722 5.47060 5.61776 5.78108 5.84922 6.20159 6.26895 6.83314 6.94321 7.34429 7.40988 8.91197 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026868 B = 0.003678 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.868149 B = 7611.319054 C = 7756.035942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.135 4.135 4 C 0.186 3.814 5 H 0.084 0.916 6 N -0.685 5.685 7 C 0.078 3.922 8 C 0.023 3.977 9 H 0.116 0.884 10 C 0.265 3.735 11 N -0.513 5.513 12 C 0.039 3.961 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.946 3.054 18 H -0.282 1.282 19 H -0.281 1.281 20 H -0.264 1.264 21 C 0.162 3.838 22 N -0.509 5.509 23 C 0.176 3.824 24 O 0.074 5.926 25 N -0.383 5.383 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.348 0.652 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.003 0.997 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 20.655 12.668 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.103 4.103 3 C -0.193 4.193 4 C 0.075 3.925 5 H 0.102 0.898 6 N -0.318 5.318 7 C -0.052 4.052 8 C 0.001 3.999 9 H 0.134 0.866 10 C -0.051 4.051 11 N -0.190 5.190 12 C 0.000 4.000 13 C -0.579 4.579 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.772 3.228 18 H -0.208 1.208 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.111 4.111 22 N -0.242 5.242 23 C -0.064 4.064 24 O 0.014 5.986 25 N -0.090 5.090 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.167 0.833 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.021 0.979 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.330 0.670 Dipole moment (debyes) X Y Z Total from point charges -2.650 20.250 10.598 23.009 hybrid contribution 0.800 -1.168 0.689 1.575 sum -1.850 19.081 11.287 22.247 Atomic orbital electron populations 1.21629 0.95092 1.01636 1.00341 1.21126 0.96386 0.96381 0.96397 1.21741 1.01585 0.94475 1.01509 1.19828 0.97993 0.86984 0.87697 0.89806 1.60435 1.51555 1.00742 1.19076 1.21984 0.94321 0.89532 0.99327 1.19127 0.85412 0.96895 0.98473 0.86648 1.29325 0.93896 0.89766 0.92134 1.80980 1.14022 1.12094 1.11943 1.18981 0.94027 0.91889 0.95086 1.21518 1.05935 0.94268 1.36154 0.92937 1.25678 0.95172 1.02753 0.94959 1.70017 1.14715 1.33855 1.37615 0.85781 0.77892 0.80276 0.78823 1.20779 1.20644 1.18820 1.25719 0.86332 0.99271 0.99804 1.71878 1.32707 1.14027 1.05571 1.31622 0.78628 0.96394 0.99720 1.85333 1.36310 1.45172 1.31828 1.74799 1.21186 1.13531 0.99451 0.93222 0.93309 0.93664 0.90146 0.91482 0.91604 0.93958 0.83325 0.90810 0.90279 0.97861 0.94459 0.92689 0.67041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.55 71.98 0.62 -2.83 16 2 C -0.08 -1.92 2.83 -10.79 -0.03 -1.95 16 3 C -0.14 -2.59 8.95 71.98 0.64 -1.95 16 4 C 0.19 4.27 2.39 44.17 0.11 4.37 16 5 H 0.08 1.80 7.86 -2.39 -0.02 1.78 16 6 N -0.69 -17.70 5.11 -495.45 -2.53 -20.23 16 7 C 0.08 2.16 4.82 86.30 0.42 2.58 16 8 C 0.02 0.82 2.40 -12.60 -0.03 0.78 16 9 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 10 C 0.26 11.08 13.67 89.44 1.22 12.30 16 11 N -0.51 -23.61 18.54 20.01 0.37 -23.24 16 12 C 0.04 1.78 4.42 29.85 0.13 1.91 16 13 C -0.54 -28.68 8.60 25.60 0.22 -28.46 16 14 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 15 C 0.01 0.74 5.46 84.65 0.46 1.20 16 16 N -0.92 -52.83 13.29 21.45 0.28 -52.54 16 17 Si 0.95 43.58 29.54 68.60 2.03 45.60 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 C 0.16 3.58 4.93 138.46 0.68 4.26 16 22 N -0.51 -9.27 11.55 -315.37 -3.64 -12.92 16 23 C 0.18 1.79 13.40 130.52 1.75 3.54 16 24 O 0.07 1.25 11.31 74.80 0.85 2.09 16 25 N -0.38 -8.97 10.51 -60.38 -0.63 -9.61 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.57 7.43 -2.39 -0.02 1.55 16 28 H 0.04 1.20 6.46 -2.39 -0.02 1.18 16 29 H 0.08 1.94 7.36 -2.39 -0.02 1.92 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 0.85 7.22 -2.39 -0.02 0.83 16 33 H 0.35 8.64 8.41 -89.69 -0.75 7.89 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.24 7.30 -2.39 -0.02 2.23 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.32 -1.12 8.06 -2.91 -0.02 -1.15 16 Total: -1.00 -70.01 334.55 3.22 -66.79 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.31 Total: 8.28 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 6.19 Total: -4.23 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -6.15 Total: -118.53 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.85 Total: 2.09 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.01 3.22 -66.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262572657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.315 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds