Wall clock time and date at job start Tue Mar 31 2020 00:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47138 * 2 1 4 4 C 1.53005 * 109.47031 * 120.00267 * 2 1 3 5 5 H 1.08996 * 109.47179 * 180.29277 * 4 2 1 6 6 N 1.46902 * 109.47371 * 60.28684 * 4 2 1 7 7 C 1.46901 * 110.99682 * 85.83160 * 6 4 2 8 8 C 1.53000 * 109.47021 * 175.95584 * 7 6 4 9 9 H 1.08997 * 109.47048 * 55.00367 * 8 7 6 10 10 C 1.47196 * 109.46736 * 295.00094 * 8 7 6 11 11 N 6.09499 * 96.11922 * 149.78770 * 2 1 3 12 12 C 1.53004 * 109.46966 * 175.00249 * 8 7 6 13 13 C 1.50696 * 109.47016 * 185.00031 * 12 8 7 14 14 H 1.08003 * 119.99758 * 359.97438 * 13 12 8 15 15 C 1.37875 * 120.00047 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00265 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00079 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47142 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47307 * 119.99554 * 17 15 13 20 20 H 1.48498 * 109.47081 * 239.99454 * 17 15 13 21 21 C 1.50707 * 109.46648 * 300.29076 * 4 2 1 22 22 N 1.34497 * 126.28450 * 254.71122 * 21 4 2 23 23 C 1.31124 * 105.61429 * 179.90533 * 22 21 4 24 24 O 1.33645 * 106.89799 * 0.36003 * 23 22 21 25 25 N 1.21295 * 109.81134 * 359.76129 * 24 23 22 26 26 H 1.09006 * 109.47067 * 299.99964 * 1 2 3 27 27 H 1.09001 * 109.47214 * 60.00152 * 1 2 3 28 28 H 1.09000 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47168 * 239.99610 * 2 1 3 30 30 H 1.09004 * 109.47183 * 174.56806 * 3 2 1 31 31 H 1.09002 * 109.47348 * 294.56204 * 3 2 1 32 32 H 1.09001 * 109.47486 * 54.56576 * 3 2 1 33 33 H 1.00897 * 110.99996 * 209.78187 * 6 4 2 34 34 H 1.09007 * 109.46870 * 55.95458 * 7 6 4 35 35 H 1.08998 * 109.47044 * 295.95911 * 7 6 4 36 36 H 1.09001 * 109.46828 * 304.99511 * 12 8 7 37 37 H 1.08997 * 109.47221 * 64.99742 * 12 8 7 38 38 H 0.97000 * 120.00662 * 180.02562 * 16 15 13 39 39 H 1.08004 * 126.55766 * 180.12052 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1300 -0.7168 1.2519 6 7 1.5560 -2.1083 1.2458 7 6 2.4558 -2.9779 0.4762 8 6 1.9759 -4.4270 0.5789 9 1 0.9351 -4.4884 0.2611 10 6 2.0909 -4.8841 1.9734 11 7 2.1797 -5.2371 3.0496 12 6 2.8374 -5.3146 -0.3215 13 6 2.2893 -6.7184 -0.3158 14 1 1.4142 -6.9539 0.2717 15 6 2.9055 -7.7021 -1.0597 16 7 3.9714 -7.4154 -1.7747 17 14 2.2256 -9.4420 -1.0531 18 1 1.0291 -9.5025 -0.1758 19 1 1.8466 -9.8306 -2.4354 20 1 3.2610 -10.3761 -0.5426 21 6 1.5317 -0.0150 2.4797 22 7 2.2498 0.7750 3.2977 23 6 1.4143 1.1736 4.2264 24 8 0.2322 0.6140 3.9516 25 7 0.3207 -0.0620 2.9484 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1257 1.4439 0.0973 31 1 1.7584 1.9274 -0.9347 32 1 1.5994 1.9836 0.8373 33 1 1.4381 -2.4525 2.1869 34 1 3.4666 -2.9005 0.8770 35 1 2.4547 -2.6679 -0.5688 36 1 2.8229 -4.9231 -1.3387 37 1 3.8621 -5.3232 0.0499 38 1 4.4048 -8.1074 -2.2984 39 1 1.6394 1.8260 5.0572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262572658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:16 Heat of formation + Delta-G solvation = 83.012804 kcal Electronic energy + Delta-G solvation = -21426.723940 eV Core-core repulsion = 18179.572144 eV Total energy + Delta-G solvation = -3247.151796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.80876 -38.64783 -36.74982 -35.42002 -34.25812 -33.20464 -32.34733 -31.20875 -27.55484 -27.17488 -25.47214 -24.36097 -22.96353 -22.81916 -21.79124 -19.93854 -18.28637 -17.91211 -16.79421 -16.56159 -16.17475 -15.66320 -15.15662 -14.78858 -14.48472 -13.95877 -13.57637 -13.05918 -12.92177 -12.76950 -12.58580 -12.37162 -12.12719 -12.05591 -11.98359 -11.76132 -11.34200 -11.26523 -11.11025 -11.08209 -10.94669 -10.82223 -10.70892 -10.55327 -10.30514 -10.16870 -9.58754 -9.23830 -8.50667 -8.46322 -6.11103 -4.14205 1.02659 2.04871 2.83263 3.27851 3.35990 3.37390 3.41407 3.52897 3.56971 3.82268 4.26798 4.41046 4.65354 4.74285 4.83471 5.03550 5.15905 5.27155 5.33869 5.41093 5.46810 5.56410 5.63924 5.68173 5.76089 5.85086 5.93382 6.03517 6.09487 6.26603 6.29456 6.48719 6.51601 6.89845 7.23066 7.41058 7.50106 7.84054 8.02074 8.21090 8.35309 8.90461 9.51520 10.99797 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.003776 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.273112 B = 7413.057554 C = 7950.263091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.145 4.145 4 C 0.181 3.819 5 H 0.076 0.924 6 N -0.677 5.677 7 C 0.066 3.934 8 C 0.007 3.993 9 H 0.113 0.887 10 C 0.239 3.761 11 N -0.475 5.475 12 C 0.033 3.967 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.169 3.831 22 N -0.482 5.482 23 C 0.150 3.850 24 O 0.076 5.924 25 N -0.354 5.354 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.342 0.658 34 H 0.039 0.961 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 20.812 5.734 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 C -0.203 4.203 4 C 0.070 3.930 5 H 0.094 0.906 6 N -0.309 5.309 7 C -0.063 4.063 8 C -0.015 4.015 9 H 0.131 0.869 10 C -0.078 4.078 11 N -0.152 5.152 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.104 4.104 22 N -0.215 5.215 23 C -0.091 4.091 24 O 0.016 5.984 25 N -0.059 5.059 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.161 0.839 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.956 19.788 6.127 21.300 hybrid contribution 0.562 -0.799 0.533 1.113 sum -4.394 18.989 6.660 20.598 Atomic orbital electron populations 1.21780 0.93931 1.03454 1.00604 1.21125 0.97494 0.95155 0.96408 1.21830 1.01154 0.95860 1.01450 1.19978 0.97752 0.87966 0.87325 0.90582 1.60670 1.50088 1.00065 1.20086 1.22229 0.93476 0.90916 0.99724 1.19341 1.04718 0.93249 0.84178 0.86933 1.29339 0.91814 0.92100 0.94553 1.81040 1.10328 1.09865 1.13923 1.19169 0.94288 0.93240 0.93886 1.21174 1.13097 0.93797 1.28363 0.92443 1.24945 0.94805 0.99020 0.95167 1.69942 1.19844 1.33673 1.29530 0.86538 0.79135 0.84564 0.77869 1.19673 1.20786 1.21007 1.25866 0.86246 0.98659 0.99591 1.71885 1.31722 1.13339 1.04523 1.30457 0.80352 0.98172 1.00157 1.85362 1.35374 1.44973 1.32725 1.74758 1.20678 1.12183 0.98294 0.93221 0.93405 0.90557 0.89249 0.92389 0.92194 0.93609 0.83904 0.94245 0.88479 0.94059 0.95698 0.92833 0.72406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.66 37.16 0.32 -1.29 16 2 C -0.08 -0.89 2.84 -90.62 -0.26 -1.15 16 3 C -0.15 -1.40 8.84 37.15 0.33 -1.07 16 4 C 0.18 2.22 2.39 -68.86 -0.16 2.05 16 5 H 0.08 0.93 7.72 -51.93 -0.40 0.53 16 6 N -0.68 -9.27 5.57 -107.94 -0.60 -9.87 16 7 C 0.07 0.96 4.96 -3.82 -0.02 0.94 16 8 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 9 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 10 C 0.24 4.88 12.91 -20.76 -0.27 4.61 16 11 N -0.47 -10.52 18.54 42.16 0.78 -9.74 16 12 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 13 C -0.53 -13.96 8.60 -34.44 -0.30 -14.26 16 14 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.17 2.10 5.01 -156.37 -0.78 1.32 16 22 N -0.48 -5.34 11.55 -13.72 -0.16 -5.50 16 23 C 0.15 1.11 13.40 51.98 0.70 1.81 16 24 O 0.08 0.76 11.31 18.10 0.20 0.96 16 25 N -0.35 -4.47 10.39 30.87 0.32 -4.15 16 26 H 0.05 0.61 6.07 -51.93 -0.32 0.29 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.98 7.61 -51.93 -0.40 0.58 16 29 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.47 7.43 -51.93 -0.39 0.09 16 33 H 0.34 5.21 7.31 -39.29 -0.29 4.92 16 34 H 0.04 0.58 7.95 -51.93 -0.41 0.16 16 35 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.26 0.36 8.06 -52.48 -0.42 -0.07 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -31.78 333.49 -5.08 -36.86 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.48 Total: -0.35 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.89 Total: -4.88 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 1.08 Total: -53.93 kcal Atomic # 8 Polarization: 0.76 SS G_CDS: 0.20 Total: 0.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.78 -5.08 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262572658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.873 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds