Wall clock time and date at job start Tue Mar 31 2020 00:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47138 * 2 1 4 4 C 1.53005 * 109.47031 * 120.00267 * 2 1 3 5 5 H 1.08996 * 109.47179 * 180.29277 * 4 2 1 6 6 N 1.46902 * 109.47371 * 60.28684 * 4 2 1 7 7 C 1.46901 * 110.99682 * 85.83160 * 6 4 2 8 8 C 1.53000 * 109.47021 * 175.95584 * 7 6 4 9 9 H 1.08997 * 109.47048 * 55.00367 * 8 7 6 10 10 C 1.47196 * 109.46736 * 295.00094 * 8 7 6 11 11 N 6.09499 * 96.11922 * 149.78770 * 2 1 3 12 12 C 1.53004 * 109.46966 * 175.00249 * 8 7 6 13 13 C 1.50696 * 109.47016 * 185.00031 * 12 8 7 14 14 H 1.08003 * 119.99758 * 359.97438 * 13 12 8 15 15 C 1.37875 * 120.00047 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00265 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00079 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47142 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47307 * 119.99554 * 17 15 13 20 20 H 1.48498 * 109.47081 * 239.99454 * 17 15 13 21 21 C 1.50707 * 109.46648 * 300.29076 * 4 2 1 22 22 N 1.34497 * 126.28450 * 254.71122 * 21 4 2 23 23 C 1.31124 * 105.61429 * 179.90533 * 22 21 4 24 24 O 1.33645 * 106.89799 * 0.36003 * 23 22 21 25 25 N 1.21295 * 109.81134 * 359.76129 * 24 23 22 26 26 H 1.09006 * 109.47067 * 299.99964 * 1 2 3 27 27 H 1.09001 * 109.47214 * 60.00152 * 1 2 3 28 28 H 1.09000 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47168 * 239.99610 * 2 1 3 30 30 H 1.09004 * 109.47183 * 174.56806 * 3 2 1 31 31 H 1.09002 * 109.47348 * 294.56204 * 3 2 1 32 32 H 1.09001 * 109.47486 * 54.56576 * 3 2 1 33 33 H 1.00897 * 110.99996 * 209.78187 * 6 4 2 34 34 H 1.09007 * 109.46870 * 55.95458 * 7 6 4 35 35 H 1.08998 * 109.47044 * 295.95911 * 7 6 4 36 36 H 1.09001 * 109.46828 * 304.99511 * 12 8 7 37 37 H 1.08997 * 109.47221 * 64.99742 * 12 8 7 38 38 H 0.97000 * 120.00662 * 180.02562 * 16 15 13 39 39 H 1.08004 * 126.55766 * 180.12052 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1300 -0.7168 1.2519 6 7 1.5560 -2.1083 1.2458 7 6 2.4558 -2.9779 0.4762 8 6 1.9759 -4.4270 0.5789 9 1 0.9351 -4.4884 0.2611 10 6 2.0909 -4.8841 1.9734 11 7 2.1797 -5.2371 3.0496 12 6 2.8374 -5.3146 -0.3215 13 6 2.2893 -6.7184 -0.3158 14 1 1.4142 -6.9539 0.2717 15 6 2.9055 -7.7021 -1.0597 16 7 3.9714 -7.4154 -1.7747 17 14 2.2256 -9.4420 -1.0531 18 1 1.0291 -9.5025 -0.1758 19 1 1.8466 -9.8306 -2.4354 20 1 3.2610 -10.3761 -0.5426 21 6 1.5317 -0.0150 2.4797 22 7 2.2498 0.7750 3.2977 23 6 1.4143 1.1736 4.2264 24 8 0.2322 0.6140 3.9516 25 7 0.3207 -0.0620 2.9484 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1257 1.4439 0.0973 31 1 1.7584 1.9274 -0.9347 32 1 1.5994 1.9836 0.8373 33 1 1.4381 -2.4525 2.1869 34 1 3.4666 -2.9005 0.8770 35 1 2.4547 -2.6679 -0.5688 36 1 2.8229 -4.9231 -1.3387 37 1 3.8621 -5.3232 0.0499 38 1 4.4048 -8.1074 -2.2984 39 1 1.6394 1.8260 5.0572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262572658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:14 Heat of formation + Delta-G solvation = 60.279444 kcal Electronic energy + Delta-G solvation = -21427.709733 eV Core-core repulsion = 18179.572144 eV Total energy + Delta-G solvation = -3248.137589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -46.60317 -39.71720 -38.17132 -36.33697 -35.76462 -34.83117 -33.26218 -32.69754 -28.99285 -28.03757 -26.87823 -25.12358 -24.22951 -23.86299 -23.44121 -20.77574 -19.10262 -18.82627 -18.47293 -18.25143 -17.16271 -16.68772 -16.52039 -16.03690 -15.66834 -15.07913 -14.96422 -14.44296 -14.34195 -14.18944 -13.91030 -13.51810 -13.37654 -13.21979 -13.10781 -12.94786 -12.77639 -12.71255 -12.54075 -12.37353 -12.14371 -12.05267 -11.83594 -11.81647 -11.65755 -11.45425 -11.20419 -10.94314 -10.55892 -9.58219 -8.20241 -6.28109 0.33936 1.25669 1.38401 1.41643 1.51852 1.87018 1.89669 2.23854 2.40666 2.62404 2.87998 3.14226 3.20097 3.43489 3.79165 3.95906 4.11930 4.25024 4.30035 4.37299 4.49424 4.66194 4.74649 4.78968 4.81505 4.90479 4.96671 5.02512 5.06402 5.10609 5.22706 5.42719 5.46700 5.57581 5.61193 5.77669 5.82253 6.05721 6.19631 6.69067 6.86030 7.28554 7.40498 8.90796 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.003776 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.273112 B = 7413.057554 C = 7950.263091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 C -0.137 4.137 4 C 0.180 3.820 5 H 0.075 0.925 6 N -0.674 5.674 7 C 0.078 3.922 8 C 0.019 3.981 9 H 0.125 0.875 10 C 0.249 3.751 11 N -0.506 5.506 12 C 0.040 3.960 13 C -0.539 4.539 14 H 0.052 0.948 15 C 0.013 3.987 16 N -0.922 5.922 17 Si 0.947 3.053 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.285 1.285 21 C 0.157 3.843 22 N -0.513 5.513 23 C 0.175 3.825 24 O 0.074 5.926 25 N -0.380 5.380 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.332 0.668 34 H 0.038 0.962 35 H 0.116 0.884 36 H 0.041 0.959 37 H 0.002 0.998 38 H 0.264 0.736 39 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 22.067 5.950 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 C -0.195 4.195 4 C 0.069 3.931 5 H 0.093 0.907 6 N -0.305 5.305 7 C -0.052 4.052 8 C -0.002 4.002 9 H 0.142 0.858 10 C -0.067 4.067 11 N -0.183 5.183 12 C 0.001 3.999 13 C -0.577 4.577 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.773 3.227 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.211 1.211 21 C -0.116 4.116 22 N -0.246 5.246 23 C -0.064 4.064 24 O 0.014 5.986 25 N -0.087 5.087 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.150 0.850 34 H 0.056 0.944 35 H 0.134 0.866 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.330 0.670 Dipole moment (debyes) X Y Z Total from point charges -5.434 21.059 6.343 22.655 hybrid contribution 0.710 -1.115 0.547 1.431 sum -4.725 19.944 6.889 21.623 Atomic orbital electron populations 1.21700 0.94343 1.02390 1.00685 1.21138 0.97043 0.95880 0.95882 1.21757 1.01146 0.94877 1.01742 1.20014 0.97672 0.87027 0.88375 0.90718 1.60664 1.49820 1.00771 1.19292 1.22095 0.93301 0.88735 1.01061 1.19254 1.04493 0.94582 0.81911 0.85786 1.29755 0.90881 0.91236 0.94856 1.81034 1.11371 1.10902 1.15008 1.18986 0.93589 0.92651 0.94698 1.21567 1.12803 0.95662 1.27693 0.92963 1.25674 0.95200 1.02547 0.95161 1.70026 1.20928 1.34797 1.30420 0.85665 0.78357 0.80455 0.78220 1.19553 1.19715 1.21131 1.25861 0.86512 0.99268 0.99925 1.71872 1.32714 1.14395 1.05642 1.31618 0.78603 0.96405 0.99806 1.85317 1.36331 1.44945 1.32057 1.74751 1.21130 1.13399 0.99403 0.94184 0.92215 0.92139 0.88664 0.92152 0.90907 0.94460 0.85008 0.94363 0.86550 0.94058 0.97984 0.92683 0.67020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.66 71.98 0.62 -2.31 16 2 C -0.08 -1.62 2.84 -10.79 -0.03 -1.65 16 3 C -0.14 -2.43 8.84 71.98 0.64 -1.80 16 4 C 0.18 4.26 2.39 44.17 0.11 4.36 16 5 H 0.08 1.78 7.72 -2.39 -0.02 1.76 16 6 N -0.67 -18.02 5.57 -495.42 -2.76 -20.78 16 7 C 0.08 2.18 4.96 86.30 0.43 2.61 16 8 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 9 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 10 C 0.25 10.13 12.91 89.44 1.16 11.29 16 11 N -0.51 -22.44 18.54 20.01 0.37 -22.07 16 12 C 0.04 1.81 4.42 29.85 0.13 1.94 16 13 C -0.54 -28.56 8.60 25.60 0.22 -28.34 16 14 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 15 C 0.01 0.73 5.46 84.65 0.46 1.19 16 16 N -0.92 -52.65 13.29 21.45 0.28 -52.36 16 17 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 C 0.16 3.76 5.01 138.46 0.69 4.46 16 22 N -0.51 -10.61 11.55 -315.39 -3.64 -14.25 16 23 C 0.18 2.16 13.40 130.52 1.75 3.91 16 24 O 0.07 1.36 11.31 74.82 0.85 2.20 16 25 N -0.38 -9.34 10.39 -60.40 -0.63 -9.97 16 26 H 0.04 0.95 6.07 -2.38 -0.01 0.94 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.51 7.61 -2.39 -0.02 1.49 16 29 H 0.10 1.82 7.58 -2.39 -0.02 1.81 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.72 7.43 -2.39 -0.02 0.70 16 33 H 0.33 10.04 7.31 -89.70 -0.66 9.38 16 34 H 0.04 1.09 7.95 -2.38 -0.02 1.07 16 35 H 0.12 2.85 7.58 -2.39 -0.02 2.84 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.32 -0.48 8.06 -2.91 -0.02 -0.51 16 Total: -1.00 -68.54 333.49 3.05 -65.49 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.41 Total: 9.82 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 6.14 Total: -3.68 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.38 Total: -119.43 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.85 Total: 2.20 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.54 3.05 -65.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262572658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.768 kcal (2) G-P(sol) polarization free energy of solvation -68.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds